isl2a (isl2,LOC102787860,LOC102305078,LOC101486127,LOC102207021)


Basic Information

Item Value
gene id isl2a
gene name isl2,LOC102787860,LOC102305078,LOC101486127,LOC102207021
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053119.1
NCBI id CM020916.1
chromosome length 42187026
location 16913537 ~ 16918273 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039808216.1
TCGAGGatctttgttttctctccacCTCTCGGTGGAGGAATACAAGTTTATCATCCAGCCAGGGACGGGACGGTCTCCTCTGCCGCTCCTCTCCTCCATCTATCGGCTTGCACTGGGCTATTTCTCCTGTATGGTGGATATCTTGCTCAATACTTCTTTCTTGGATGATATGGGGGATCATTCCAAAAAGAAGTCGGGAATCGCAATGTGTGTGGGCTGTGGAAGTCAGATACACGACCAGTACATCCTGAGAGTCTCCCCGGACCTGGAATGGCATGCAGCCTGCCTCAAGTGTGCAGAGTGCAGCCAGTACCTGGACGAGACCTGCACGTGCTTCGTCCGAGACGGAAAGACTTACTGTAAAAGAGATTATGCAAGGTTATTTGGCATCAAATGTGCAAAGTGTAACATGGGCTTCTGCAGCAGCGATCTGGTGATGAGAGCTCGGGACAACGTGTATCACATGGAGTGTTTTCGGTGCTCGGTTTGCAGCCGTCACCTCCTGCCAGGCGACGAGTTCTCTCTGCGGGACGACGAGCTACTGTGTCGGGCAGATCACGGCTTGCTGGAGGAGCGGGCCTCTGCAGGGAGCCCGCTGAGCCCGGAGAACATTCATACCAGACCGCTGCACAGCTCAGAACCAGTTTCGGTCCGGCATCCTCCTCATCACCGGAACCACGTCCACAAGCAGTCCGAGAAGACCACCCGGATCCGGACGGTGCTGAACGAGAAGCAGCTCCACACCCTGCGGACCTGCTACAACGCCAACCCGCGACCGGACGCCCTGATGAAGGAGCAGCTGGTGGAGATGACCGGCCTGAGCCCCAGGGTGATCCGCGTCTGGTTTCAGAACAAGCGCTGCAAAGACAAGAAGAGGTCCATCCTGATGAAGCAGCTTCAATCACAGCAACACTGCGACAAAACCAATCTGCAGGGTCTGACAGGCACACCTCTGGTGGCAGGCAGCCCGATCCGGCACGACAACACCGTGCAAGGGAATCCTGTGGAGGTGCAAACCTACCAGCCACCGTGGAAAACCCTCAGCGACTTCGCCCTGCAGAGCGACCTGGACCAGCCCGCCTTCCAACAGCTGGTGTCTTTCTCTGAGTCGGGCTCTGTGGGCAACTCCTCGGGCAGTGATGTGACCTCTCTGTCGTCTCAATTACCGGACACACCTAACAGCATGGTGCCGAGTCCCGTTGACACGTGAAGAGGTCCCGAGGTCAGCTGGAGACCCCGAGCGCGCACCCGCGTGCTCTGCAGGGGACGCGCAGAGACCTCAGTGACATTTAATCAAGGAAAAAcgaaaataaggaccaggatgGATTATGCTCTATGACACATTCAGGTGCCGACTGGAGGATTGGAGGTCTGACTATTCCCTTTACATTTAGGCATTTTAGCTCACTGTCTTGCTCAAGGATACCTCGGCAGGACGTCGACACACTGTTGATGGACATTATGGGCTTCTAGTTATGGGACCTTCTACCATGATGCCAATGCCTGAACTGTCATAACGTGGTGAATATGTAATGGGATTCAAAGACGTGAGCCTGTATTGGACGTCTGAAGGTTACAGTATGTGTATCAGGAACCCAGAATACAAACTGTAGATGTGCATGATTTGTAAGTTTCAATATAGACTCTTGTAAATGAATGAAACAGATGAGATGCGCATTGTTCGcgttttctccagaaaataagttattattatttattatgaggACAGACATAGCCGATCTTATCAATAAAACCATAGTTCTAACTGA

Function

symbol description
isl2 Enables sequence-specific double-stranded DNA binding activity. Predicted to be involved in axonogenesis; neuron fate specification; and regulation of transcription by RNA polymerase II. Predicted to act upstream of or within negative regulation of neuron differentiation and neuron differentiation. Predicted to be part of chromatin. Predicted to be active in nucleus.

NR:

description
insulin gene enhancer protein ISL-2A isoform X2

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0048665 neuron fate specification biological_process
GO:0048675 axon extension biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K18492 ISL2; insulin gene enhancer protein ISL-2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039808216.1 True 1769 mRNA 0.53 6 16913537 16918273

Neighbor

gene id symbol gene type direction distance location
rcn2 rcn2,LOC102789787 coding downstream 67404 16841109 ~ 16846133 (-)
pstpip1a pstpip1,LOC102789492 coding downstream 71123 16835332 ~ 16842414 (-)
si:dkey-24l11.2 LOC104946603 coding downstream 83373 16820314 ~ 16830164 (-)
slc28a1 slc28a1,LOC108230093,LOC106514348 coding downstream 110215 16792154 ~ 16803322 (-)
malt3 LOC104964024,LOC103357518,LOC102077990 coding downstream 137171 16766929 ~ 16776366 (-)
tmem266 tmem266 coding upstream 10468 16928741 ~ 16958417 (-)
lactb lactb coding upstream 45204 16963477 ~ 16967097 (-)
tpm1 tpm1,LOC103141214,LOC106946143 coding upstream 50320 16968593 ~ 16981538 (-)
tln2b tln2 coding upstream 75650 16993923 ~ 17075416 (-)
foxb1a foxb1,LOC103353681,LOC101061572 coding upstream 443965 17362238 ~ 17365761 (-)
G85462 scaper,LOC102788151 non-coding downstream 11216 16901164 ~ 16902321 (-)
G85460 scaper non-coding downstream 13742 16897684 ~ 16899795 (-)
G85453 scaper,LOC102788151,LOC107662441,LOC107688925 non-coding downstream 44374 16867127 ~ 16869163 (-)
G85441 NA non-coding downstream 97390 16811074 ~ 16816147 (-)
G85436 NA non-coding downstream 104035 16809282 ~ 16809502 (-)
G85481 etfa non-coding upstream 2176 16920449 ~ 16922142 (-)
LOC120563415 NA non-coding upstream 171832 17090105 ~ 17095763 (-)
G85601 LOC101478969,LOC102214964,LOC102308915,LOC100701437,LOC102780768 non-coding upstream 597630 17515903 ~ 17517167 (-)
G85613 acsbg1,LOC102779547 non-coding upstream 625882 17544155 ~ 17544405 (-)
G85660 NA non-coding upstream 738872 17657145 ~ 17657371 (-)
G85435 NA other downstream 105121 16808056 ~ 16808416 (-)
trnah-gug_10 NA other downstream 148751 16764715 ~ 16764786 (-)
LOC120563869 frmd5,LOC104917831,LOC102299895,LOC106561170 other downstream 149819 16697095 ~ 16763718 (-)
G85321 NA other downstream 472572 16439374 ~ 16440965 (-)
st8sia2 fam174b,st8sia2,LOC100690985,LOC101474125,LOC102798331 other downstream 704351 16188853 ~ 16209186 (-)
fbxl22 fbxl22 other upstream 707738 17626011 ~ 17645520 (-)
ppcdc ppcdc other upstream 943440 17861713 ~ 17877065 (-)
dennd4a dennd4a other upstream 975580 17893853 ~ 17956629 (-)
trnaq-cug_6 NA other upstream 1008774 17927047 ~ 17927118 (-)
G85813 rpl4 other upstream 1112735 18031008 ~ 18036276 (-)

Expression


Co-expression Network