sv2 (LOC103366734,LOC105926231)


Basic Information

Item Value
gene id sv2
gene name LOC103366734,LOC105926231
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053119.1
NCBI id CM020916.1
chromosome length 42187026
location 11027303 ~ 11039772 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039808246.1
ATGTCTCGTCACGTGCCGCGAGACGCGGAGGCGCGAGAGCCGCTTCTCACCAGCGACTACCTGGAGCCGAACGAGCTGGACTCAGATGAAGgTGAAACAATTTTCGACAGGAGCGCATCAAATATCACACGTGATGTCGGTGGGAGTGCACAGAAAAGGTTAACATATGAGGAAGCAGTAGATATAGCAGGTTTTGGTTTGTTCCATTGGCTGCTGTTGGTGGTGTGTGGCTGGGCCAATGCCAGCGATGCCGTGGAGATTCTCTGTGTGTCCTTTCTCCTGCCAACCGCACGCTGCGATCTGCTGCTGAGCTCTTCAGACATGGGCGTGCTGACTGCCAGCATTTTCCTCGGAATGATGGTGGGCGGCTACATGTGGGGATACCTGGCTGACCAGAGGGGGCGTCGCAGGGTCTTGGTTGTGTCCCTGACGGTTAATGGGGTGTTTGGAGGTTTGGCCAGCGTGGCTCCGTGGTTCTGGCTCTTCCTGCTGCTGCGGTTCATCAGCGGCATCGGTGTCGGTGGGTCGATCCCTGTTATCTTCTCTTACTTCTCAGAGTTTATGCCTTGTCAGAGGAGAGGTGCAATGATCAGTGCTCTGGCCACCTTCTGGATGGCAGGAAACATCCTGGCTGCAGGACTGGCCTGGTTGGTGATTCCAAGAACCTGGGCCCATTTTTCACTGGGCTCACTGGACTTTCAGAGCTGGAGACTGTTTGTGGTGCTCTGCTCTGTCCCCAGCCTCACCTCAGCCGTCCTCTTCAGGCTGCTCATGCCTGAAAGCCCCAAGTTCCTCATGGAGGCTGGCCGGGAGAAAGAGGCGATCCGGGTCTTCCAAGTGATATTTGAGCTGAACATGTGGGGAAAGGGACAGGATTTCCCGGAATTTGGTTTGTGCAACGGCTCCAAGCAAAGAGGGGAACTGGACGAGACCAGGACCTCGGGttcacatagagagagacttgCCTGTATTTTGAAAAAGGCCCTGGTTCCCATTAAACAGATGTTTAATGATTCGCTTAAATCCAGGAGCTTTGCACTGCTCATCATCTTCTACTGCATTTCCTTTGGttaCTACGGACTGTGGATGTGGTTCCCAGAGCTGTTTGAGAGAATTGAGGACGGCGGCTCGCCCTGTGCCAACGTGTCCCTGCTGCGGTCTCCACTCCACGACCAAAGCTGCTACCCGGTCAAGACAGCAGTGTACATGGAGGGCTTCATCATTGCTGCATCAAACTTACCGGGAAACATCTTCACTATTCTTATGATGGACAGCATGGGAGGAAAGGCTCTACTGTCCTGCAGCCTGCTGTTGTCCAGTCTGAGCGTCTTCCTCATCTATGTGGTCCAGACCAAAGCCCAGAGTCTGATCCTCTCCTGCGTCTTCAGCGGCGTGTCAGTTATCGCCTGGAATGCCCTGGACGTGGTGGGAACGGAGCTCTACCCAACCCAGCTACGgTCCTCTGCTCTCGGTTTCTTCACAGGAGTGGGCCGAGTGGCAGCCATCATGGGTAACGTAGCCTTTGGAAAGTTGGTAGACACAAACTGTGCCGTCCCGGTCCTGCTGGTGTCAGCTCTGCTGCTCACCGGAGGACTGGTGGCTCTTCTGCTTCCACAAACCAGGCAGACGGAGCTCACCTGATGGCTCACAATCTACATCacaatattttatataattacaGTATTGGAAAACATCCTCTTAATTTCCTCATGAAAGCAGACTGGATGATCTCTGATCGTTTATCTCCTGTTTTTGCTCCCAGAGGATATTTGAATCCTGTGCCTTCTGTCATCTCTCTGTGCCTTTGTACGGTGCCTCATTTAAAATGCCAAAGACAAGAAGAAATTGTCAAAAGACAGCGGGGACTCCATTTTCGAAGAATTATTATTGCGGAAAGTAGAATTCAGATTGTGAGCTTGTGATGATTAAAACTCTTTTCAGGTGTGAGTCAAAGTATGAAGGACACCTTTCAAAAGTTTGTCTTTAAACTCTACAAACATCTTACTTTGTATGTTGATCATGATTTCTAGAGTATAATAAGTGATGCTGCTGGTTACTCAAACGTTTTGCTgttagataaagatatttctagAAAAGAAACACTGCACATTCCACATATTGTGAACATCTATGCATACAGTAGATTGTATCATTTTGTACCCAATCTGTCATTATTCCTGCACAAACCAAAGATTGctaatttcaatttacaatcatttaaaaaaggacTAAGTACAGGTGAACAAATCCTTATACTGTATGAGCTTGAGTTGCGATATTGTTGATGGGCTCATATTCCCATTGGTTGTTCTGTAAAGCTGTCTGTACTTTGTGGCTACTAAAGCAGTTTGTTTAAACAAACACTACATCTCTTCATGTCA

Function

NR:

description
synaptic vesicle glycoprotein 2B-like isoform X1

GO: NA

KEGG:

id description
K06258 SV2; MFS transporter, VNT family, synaptic vesicle glycoprotein 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039808246.1 True 2381 mRNA 0.49 13 11027303 11039772

Neighbor

gene id symbol gene type direction distance location
LOC120563889 NA coding downstream 55774 10963692 ~ 10971529 (-)
snx22 snx22,LOC104929545 coding downstream 66210 10949753 ~ 10961093 (-)
adpgk adpgk coding downstream 80521 10935704 ~ 10946782 (-)
ppib ppib coding downstream 92512 10929968 ~ 10934791 (-)
LOC120564602 NA coding downstream 147655 10717165 ~ 10879648 (-)
ireb2 ireb2 coding upstream 22923 11062695 ~ 11081305 (-)
wdr61 wdr61 coding upstream 61277 11101049 ~ 11110308 (-)
sin3aa sin3a coding upstream 106898 11146670 ~ 11169923 (-)
snupn snupn coding upstream 165682 11205454 ~ 11215493 (-)
cspg4 cspg4 coding upstream 225396 11265168 ~ 11342369 (-)
G83942 NA non-coding downstream 14901 11011298 ~ 11012402 (-)
G83941 NA non-coding downstream 16065 11010862 ~ 11011238 (-)
G83911 NA non-coding downstream 102285 10924503 ~ 10925018 (-)
G83854 NA non-coding downstream 486642 10537831 ~ 10540661 (-)
G83819 NA non-coding downstream 655124 10368773 ~ 10372179 (-)
G83974 NA non-coding upstream 21295 11061067 ~ 11061304 (-)
G84050 NA non-coding upstream 330627 11370399 ~ 11370649 (-)
G84051 NA non-coding upstream 354776 11394548 ~ 11394883 (-)
G84053 NA non-coding upstream 482937 11522709 ~ 11523000 (-)
LOC120563423 NA non-coding upstream 822589 11862361 ~ 11862788 (-)
oaz2a oaz2,LOC104929548,LOC101470759,LOC102200097,LOC106531198 other downstream 114086 10823286 ~ 10913217 (-)
LOC120564603 NA other downstream 312458 10706219 ~ 10714845 (-)
scamp2 LOC103379909,LOC103364404,LOC104932119 other downstream 364625 10643916 ~ 10662678 (-)
G83826 mfge8,LOC104961859 other downstream 595159 10389244 ~ 10432144 (-)
tdg.2 LOC104948407,LOC103366417 other downstream 847302 10174471 ~ 10180001 (-)
ptpn9a ptpn9 other upstream 133781 11173553 ~ 11260961 (-)
G84083 NA other upstream 848255 11888027 ~ 11888398 (-)
G84123 cat,LOC102293651,LOC102204975,LOC102775586,LOC102293936 other upstream 1101751 12141523 ~ 12144546 (-)
G84530 LOC100696427,LOC106963151,LOC107104182,LOC107388919,LOC104956556,LOC102796452,LOC102202152 other upstream 2190845 13230617 ~ 13231095 (-)
prr5a prr5,LOC103371545 other upstream 2207056 13246828 ~ 13256093 (-)

Expression


Co-expression Network