hal (hal,LOC102785645)


Basic Information

Item Value
gene id hal
gene name hal,LOC102785645
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053119.1
NCBI id CM020916.1
chromosome length 42187026
location 20919230 ~ 20931076 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039808291.1
CGGCGAGCAGCGCTCACTGAAAGCAGAGTCCCGCTGAAGCGCAATGCCTTGTTTTACTGTCCACATCCGAGATGAGTGGCTGGCAGTGCCCTGCCGGGATACCACCAACACCATCCGGTGGCTCGGACAAGAAGCTCTTAAACGTTACGTAAAGAACAAACCAGACAACGGTGGCATCACGGCTGTAAAGGACACTCGTTTTGTTGTGCGCAGGTGCCAGGGTTTGGGTTTGTTGGACGCAGATGACACTGTCGAGGATGTACTGGAGGATAATGACTTTGTCGAGCTCGCTATTGAAGGCGACACCATGTCTCCTGACTTTATCCCGTATGAGCCTGGAGTTTCTCACCTCACAGCAGCATACAGGGAACCTGCAGAGTACATTTCCTTGGACGGCAACACGCTGACATCGACAGATCTGGTCAATTTAGGAAGGGGACTCTACAAGATAAAGCTGACTCAGGAGgcagaaagaaaagttgtgcaAGCCAGAGAGCTTTTGGACACCATTGTCAAAGAAAACAAAGTTGTTTATGGAATCACAACAGGTTTTGGCAAATTTGCCCGAACAGTCATTCCTGTCAGCAAGCTCAAGGAGCTGCAGGAGAACTTGGTGCGGTCACACTCAGCAGGTGTTGGAAACCCGCTAAGCCCAGAAAGGACTCGCATGCTGCTCGCTCTGAGGATCAATGTTCTGGCCAAAGGGTACAGCGGAATTTCTCTGGAAACCCTTCATGCCATGATCCAAGCCTTCAATGcttcctgcctCTCCTTCGTCCCAGAGAAGGGAACAGTGGGTGCTAGTGGAGACCTGGCACCCCTTTCTCACCTGGCCCTTGGACTGATCGGGGAGGGTAAAATGTGGTCTCCCAAGAGTGGATGGGCAGATGCCAAATATGTCCTGGAGGCCCATGGACTGAAGCCAATATCACTAAAGCCTAAAGAGGGTCTTGCTCTGATCAACGGGACCCAGATGATCACCTCTCTGGGGGCGGAGGCTGTGGAGCGAGCCCAGGCAATTGCTCGGCAGGCAGACATCATTGCTGCTTTGACCCTGGAGGTGCTAAAGGGAACCACCAAGGCCTTTGACAGTGACATCCATTCGCTGCGGCCCCACCCAGGACAGATCGAGGTGGCCCTGCGCTTCCGCTCGCTGCTGGACTCTGATCACCATCCATCCGAGATAGCAGAGAGCCACCGGTTCTGTGACAGAGTCCAGGATGCCTACACCATGCGATGCTGTCCTCAGGTTCATGGAGTCACCAATGACACAATAACATTTGTCCAAAACATCATCAATACAGAAATCAACAGCGCCACTGACAATCCTATGGTATTTGCAGAAAGAGGTGAGACCATTTCAGGTGGGAATTTCCATGGCGAATACCCAGCTAAGGCTCTGGACTTTTTAGCCATTGCAGTCCATGAGCTGGCCTCCATAAGTGAGAGGAGGACCGAAAGGTTGTGTAACCCGTCTCTGAGTGAGCTGCCTGCCTTCCTCGTCAACGAGGGAGGACTTAACTCAGGCTTCATGATTGCTCATTGCACCGCTGCTGCCTTGGTTTCAGAGAATAAAGTTTTGTGTCATCCATCGTCTGTGGACTCCTTGTCCACTAGTGCTGCCACAGAGGACCATGTGTCCATGGGAGGCTGGGCTGCTAGGAAGGCCCTGAGGGTTGTGGAGCATGTGGAGCAAGTTCTTGCTATAGAGCTGTTGGCAGCCTGTCAGGGTATTGAGTTCCTCCGCCCACTTCGTACCACCACTCCATTGGAGAAGGTCTATGACCTTGTGCGTAGCGTTGTCAAACCATggattaaagacagattcatgtCTCCGGACATTGAAGCTGTTCACCGTCTTCTACTTGACCAGAAGGTGTGGCATGTGGCCAAGCCTTATATCGACAAGTATCAGACAGAGTACATCCCCGAGTCCCGTCCCGGCTCTCCTACTGCCTTCTCTCTGGAGCCTCCAGCATCCCCGAGGAAGCGTGTTCGTCATGAGTGAAAACATGTCAAATGTTTGATATTTTGCAATAACTATATCATCATCATTTATTGAGACTTTTGTGAATTTGAATGAAAATGACCCACAatttttgattgtttgttttgACCCTTGAAGAATAAATTCATACTTTGATTTCAGACATTTTTAATCATTAAGGATATCTTGTTGAACTTGCATATAGCTTACACACAGCCTACCTTACACCACTGTACAATAGAATTGTATTTATCTAAGCTTTTGTTGTCCCTTAAAATGTGCGTAATTTAGTTTGTATTGCCACGACTACCTCAGCCATTGTACAATTTTCACATATCAAATGATTTTAATGATGTAGCACAAACATTACTatgattaaatgtttgtttttttctggtatAATTACATGAAATCTTAAATTATTGTCATCTGTATATTTCCATCTTAGACAACACAATACACGTTTTTAAAGCTC

Function

symbol description
hal Predicted to enable histidine ammonia-lyase activity. Acts upstream of or within hematopoietic stem cell differentiation. Predicted to be located in cytoplasm. Human ortholog(s) of this gene implicated in histidinemia. Orthologous to human HAL (histidine ammonia-lyase).

NR:

description
histidine ammonia-lyase

GO:

id name namespace
GO:0019556 histidine catabolic process to glutamate and formamide biological_process
GO:0019557 histidine catabolic process to glutamate and formate biological_process
GO:0009058 biosynthetic process biological_process
GO:0005737 cytoplasm cellular_component
GO:0004397 histidine ammonia-lyase activity molecular_function

KEGG:

id description
K01745 hutH, HAL; histidine ammonia-lyase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039808291.1 True 2462 mRNA 0.48 20 20919230 20931076

Neighbor

gene id symbol gene type direction distance location
LOC120563851 LOC104963714,LOC103358322 coding downstream 14415 20894804 ~ 20904815 (-)
LOC120563620 NA coding downstream 42096 20859420 ~ 20877134 (-)
nr2c1 nr2c1 coding downstream 60292 20850776 ~ 20858938 (-)
LOC120563622 LOC103358318,LOC104940631 coding downstream 70503 20836690 ~ 20848727 (-)
LOC120564151 flnc,LOC103358317,LOC102787912,LOC102305697,LOC102200922 coding downstream 115355 20780707 ~ 20803875 (-)
LOC120564353 cdk17,LOC106573057 coding upstream 9878 20940954 ~ 20973166 (-)
camk1db LOC104963721,LOC101175563,LOC105938601,LOC102229393,LOC106946080 coding upstream 51478 20982554 ~ 21002394 (-)
dhtkd1 dhtkd1,LOC102784200 coding upstream 73307 21004383 ~ 21024546 (-)
LOC120563607 celf2,LOC104940643 coding upstream 95778 21026854 ~ 21059534 (-)
taf3 taf3,LOC103371965 coding upstream 131442 21062518 ~ 21071325 (-)
G86853 NA non-coding downstream 10640 20908389 ~ 20908590 (-)
G86761 NA non-coding downstream 219593 20698815 ~ 20699637 (-)
G86686 NA non-coding downstream 457407 20402744 ~ 20461823 (-)
G86660 NA non-coding downstream 655024 20250890 ~ 20264206 (-)
G86652 reln non-coding downstream 677380 20241433 ~ 20241850 (-)
G86976 NA non-coding upstream 171554 21102630 ~ 21103379 (-)
LOC120563411 NA non-coding upstream 209431 21140507 ~ 21146513 (-)
G87030 LOC103366871,LOC104946806,LOC106525492,LOC108230167 non-coding upstream 313934 21245010 ~ 21251759 (-)
G87107 nrcam,LOC101067328 non-coding upstream 531629 21462705 ~ 21466246 (-)
G87120 NA non-coding upstream 555456 21486532 ~ 21512528 (-)
LOC120563850 NA other downstream 31604 20877668 ~ 20887626 (-)
LOC120564033 LOC103358331,LOC102195670 other downstream 89995 20806882 ~ 20829235 (-)
G86638 NA other downstream 659971 20252639 ~ 20259259 (-)
cep152 cep152,LOC104960117 other downstream 1345542 19557452 ~ 19573688 (-)
G86402 LOC103363837 other downstream 1530655 19387822 ~ 19388575 (-)
dnajb9a dnajb9,LOC100706374,LOC102775779,LOC102215328 other upstream 438455 21369531 ~ 21372509 (-)
G87140 NA other upstream 781966 21713042 ~ 21713554 (-)
LOC120564778 LOC103358851,LOC101480430,LOC100706913,LOC102797593 other upstream 803930 21735006 ~ 21739344 (-)
LOC120564428 NA other upstream 1416094 22347170 ~ 22366978 (-)
parvg parvg other upstream 1758085 22689161 ~ 22706296 (-)

Expression


Co-expression Network