LOC120563965 (ptprq)


Basic Information

Item Value
gene id LOC120563965
gene name ptprq
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053119.1
NCBI id CM020916.1
chromosome length 42187026
location 15234332 ~ 15237616 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039808527.1
gggtttGTTTTCAGTTCCAGGACACTGCACGGATACATCATGGCAGAGTTCGAAGGGCATCTGATTAAATCTGTCTTTCCTCTCGTCTTTTCCTCCTCAGTTACATCTCTCTGTTTCAGTTCATGCTAATGATGTTACATCACAGGTATCTGATGCCACGTGACACTCGTGTCTCCCATCAGGACTGAGGAGCACAAACAACAGAATCATTACAActaacacattttttaaatttcaggGCAATATTCTGTTTCTCTCTAGCACGTTCCTGAGGGGCCGTTAGAGGTTCTTATTTGCCCAGTGCAAATATATTTGTACCACTCATCAGTTTCTGTATTGATGACAGGCCATACTCCTGTTTGTGTTATGAAAGTCTTTCCCCTGCATCTCAGCTCCAGACATGCCTCCTCAGTTTCTCCACGCCAAGAAGTTGTCAGACTATGAGGTAGAGTTGTCGTGGCAACCACCACTTGAAGCAAATTCAGACATACTCTACTACATTGTCAGAGTTTGGAATGAAACGACTGAGCTGTGGCAGAATGTGACAGGGACATCAGTGGTTATTAATGTAGACTCAGAGAGTCGCTACAACGCTTCTGTCTCCAGCTGGAACAGACTGGGAGATGGAGGAGTGCTGATCTACATCAGCTTTAACACCATCAATGCAGAACCATTTGACCCCCCGCGGAATGTGACTTTTGCAAATGTGACCGCTTCCTCCGTCAACTTGCTGTGGCACCCGCCTGCTGAACCTAATGGAATCATTGTACACTACACCATTTACTACTCATATGACAACACTGTTGCTGAGCAGaGGGTTCCTATTTCAAACTTAGGTGCCCCTGCCTCTCCTGATTCAGCCCTCTCCTACACTCTGACTCGGCTGATTGGGGGCACAAACTACACCCTGTGGATGACCTCCAGCACAGCGCAGGGGGACGGAGGGGTTCAGAGCGAGCCACTAACCCTGTTCTTACCGGAGGACGCCGCTCCACTCTCAGCCAAGCACCGGATCTCCAGGGCACCTTGTCTCTCCCGCACAGCCAAGCCCCCCTGCTGGGCTcagacccccacacacacctggcCCCTCACATCCACTCATTCATCTTATGGATCTCTCAAGTGTTATCTCCCCTTTCCCCTTCAtctccctttttttcttctctgtgtACCATGCTTTATTTTCGGAGGGGCGGAGACGATGAACAGGATGAGTATTTACTCCTCAACCCCTTTCTTTCTCAAGGTTTCAGTTGTGCTAGTTTCTCTCTTAAATTCCTCTGTATGTCTCTGGATTGGCTGTTATTATTGTAGCAAACTGTTGTTGTGTCTGTTAACTGTGCTGTTTTACTTTGCTGTGTTTCTGCATTGTTAAAGTAATGTCATGCGGTATTGTTCTATTTGATGTGCTGTTGTTGATTTTGTTAATTGCAACAATGCTGCCAATGATTATGACGGTGCTTGTGAcagatgatgataatgatgttgatgatgatgatgatgactggTGTGCTGTTCATTTTCCCTCAAGTGTCGGAGTGTGTATAGTTGATTGATGTCCTAATTTACTGCCTCATAGTACAGTAAACTCACATCAAAATGCTCACAGTTTTCAACCAGTGTTGTCACTGGTAGTCAAAAATAGTAACACTATTCTTCTTGTTTCCCTCTTCAGTGCCAA

Function

symbol description
ptprq Predicted to enable protein tyrosine phosphatase activity. Predicted to be involved in peptidyl-tyrosine dephosphorylation involved in inactivation of protein kinase activity. Predicted to act upstream of or within protein dephosphorylation. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be part of receptor complex. Human ortholog(s) of this gene implicated in autosomal dominant nonsyndromic deafness 73 and autosomal recessive nonsyndromic deafness 84A. Orthologous to human PTPRQ (protein tyrosine phosphatase receptor type Q).

NR:

description
PREDICTED: phosphatidylinositol phosphatase PTPRQ

GO:

id name namespace
GO:0035335 peptidyl-tyrosine dephosphorylation biological_process
GO:0004725 protein tyrosine phosphatase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039808527.1 True 1681 mRNA 0.46 5 15234332 15237616

Neighbor

gene id symbol gene type direction distance location
wash1 wash1,LOC102303465,LOC101485180 coding downstream 44346 15182609 ~ 15189986 (-)
fkbp4 fkbp4 coding downstream 62129 15163553 ~ 15172203 (-)
b4galnt3b LOC103133797,LOC106915345 coding downstream 75508 15139441 ~ 15158824 (-)
c2cd5 NA coding downstream 103068 15106071 ~ 15131264 (-)
lmf2a lmf2,LOC102783784 coding downstream 128590 15098626 ~ 15105742 (-)
otogl otogl,LOC102779350 coding upstream 24870 15262486 ~ 15291962 (-)
syt1b syt1,LOC100710649,LOC102779835,LOC103358504 coding upstream 61071 15298687 ~ 15304280 (-)
cd9a NA coding upstream 73261 15310877 ~ 15317845 (-)
pgpep1l LOC103364746 coding upstream 219191 15456807 ~ 15463714 (-)
nr2f2 nr2f2,LOC107388818,LOC100705923,LOC108230091,LOC102227842,LOC104957255,LOC106930729,LOC105023478,LOC106573769 coding upstream 564808 15802424 ~ 15811999 (-)
G85027 NA non-coding downstream 55159 15178340 ~ 15179173 (-)
G85011 ppp6r2 non-coding downstream 171195 15062611 ~ 15063137 (-)
G85007 NA non-coding downstream 176403 15057725 ~ 15057929 (-)
G84948 NA non-coding downstream 278925 14954128 ~ 14955407 (-)
G84971 NA non-coding downstream 382309 14851720 ~ 14852023 (-)
G85084 NA non-coding upstream 124221 15361837 ~ 15363425 (-)
LOC120563611 NA non-coding upstream 215593 15453209 ~ 15455514 (-)
G85121 LOC103364747,LOC103358513 non-coding upstream 218039 15455655 ~ 15458913 (-)
LOC120563610 NA non-coding upstream 218224 15455840 ~ 15456554 (-)
G85125 NA non-coding upstream 228966 15466582 ~ 15472857 (-)
G85014 ppp6r2,LOC103370604 other downstream 160982 15066039 ~ 15073350 (-)
si:ch1073-390k14.1 LOC103375950 other downstream 266549 14961860 ~ 14967783 (-)
LOC120563775 cacna2d1,LOC104952157 other downstream 676104 14501896 ~ 14558228 (-)
LOC120564470 NA other downstream 997380 14223197 ~ 14236952 (-)
zgc:77752 NA other downstream 1196616 14031104 ~ 14037716 (-)
ttc23 LOC104957250 other upstream 235318 15472934 ~ 15484145 (-)
G85133 mef2a,mef2aa,LOC107553916 other upstream 277162 15514778 ~ 15544082 (-)
chd2 chd2 other upstream 918368 16155984 ~ 16187336 (-)
st8sia2 fam174b,st8sia2,LOC100690985,LOC101474125,LOC102798331 other upstream 951237 16188853 ~ 16209186 (-)
G85321 NA other upstream 1201758 16439374 ~ 16440965 (-)

Expression


Co-expression Network