LOC120563974 (lrrc17)


Basic Information

Item Value
gene id LOC120563974
gene name lrrc17
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053119.1
NCBI id CM020916.1
chromosome length 42187026
location 13204676 ~ 13209541 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039808540.1
gTGGTGTCCTGTCTACAGTTGAAGCTGAGTGGAGTCGCTATATACCCAACTGAGAGAAGAATACCAACTGACCTGAGTGCAGCCGGACAGGTTGAGGTGGATGAGATTGTGGCAACCCTTccctgtgttcagTTCTTCTTACTGAAAAGACAATCCCTGCAGGGCACAGGATGCATGtgacctcctctctcctcttagcctctctgctcctcctcctgctcccgTCCACCGAAATGAAAAGACCCGGGAAGGGCAGAGGCCTCAGGGGGGCgagacacaaactcacacacgaTAGAGTAAGAAGTGCTGCGCGTCACACCAGATCAGGCCCCTCCAGGCTTGTGGCATCTGACTGCTCAGAGTTGACAGAATCTGGAGACTTCTTTGTAGACTGTCAAGACCGACACCTCACCTCCATTCCCACCTCACAGACCTGGTCCAAACAACCAAAGCACCTCCTTCTAGCACGCAACCAGATCAAAGTCCTTCGTGATGGGGCCTTCTTTGGATTTGAGAGTTTAACTAGTCTGGACCTGCAGCAGAATCAGATCTCTTTAGTGGAGGAAGGGGCTTTCCAGGGCCTGACACGCCTTACaaccctgctgctgcagcacaACCACCTGGGAACACTTAGCGAGGAGGCCCTCATCCCCATGCCAAACCTTCGCTACCTACGTCTTTATGATAATCCCTGGAATTGTCTCTGCCCGATGGACAGTCTCGTACGTACCCTACAGGTCCCAAGCAACCGTAATCTAGGAAATCATGCCAGGTGTGCAGAGCCCATCAGGCTGAAAGGCATTAAGTTGAAGCAGATTGACCCCATATTACTTTGTAAGGAGAGAGACCCAACCAGCAACCGAACAGATCCCACAGACCCTGTAAAGCCCATACCAATTCGCATAAGACCAGATGCCACCACATTATGCCATACCTACCTTTTCCCCCAAATACAGGTGGACTGCCGTAAAAGAGGTCTAACCGAGGTGCCTACAGGTATTTCAGAGGATGTTGTTCACATTGATCTGTCCCATAATTCAATTCGTCATCTCAAAGCCAGAAATTTCCAAACAGCGAGGAGCCTCAGAACCCTTAACATCAGTCATAACAATATGGAGCACATTGACACAGCTTCCCTGTTTGGGCTGCTGCACCTTCGTGAGCTGGACCTGTCTGACAACAGCCTGCATTTTATCCAGTACGGAGTTCTTGAAGACCTTTACTTCCTGTCACAGCTAAAACTGGGAGGAAACCCCTGGGTGTGTGACTATAGCATCCACTACATGGTGTACTGGCTGCGTCTGCACCCAGGGGTGAGGCACTCTGGCCTGCTGTGTCACTCCCCTCCTGAACATACTGGGAAGAGTGTAGCGAAGTATGTGCATTCCTACAACGGAGAGTGTCCAAAGGACAGACAGCAAAGCAGAACAGATCCAGACCAATCAAACCCTGAACTATGGAATACACCAATGGAAGTGCAAggagagctggaggaggaggagctggagccGAGCCATTTGAGAGTACCGCAGAAATACCAGATCATCAGGCTGTCCTGACTCAAATGAAAATTTTACCTACAAATTTGACTTAATTTCATTCAATATCATAAAACCGTCTGTATCAGAtagagaaaatacatttttcagtgttg
>XM_039808541.1
CTGAGTGGAGTCGCTATATACCCAACTGAGAGAAGAATACCAACTGACCTGAGTGCAGCCGGACAGGTTGAGGTGGATGAGATTGTGGCAACCCTTccctgtgttcagGGCACAGGATGCATGtgacctcctctctcctcttagcctctctgctcctcctcctgctcccgTCCACCGAAATGAAAAGACCCGGGAAGGGCAGAGGCCTCAGGGGGGCgagacacaaactcacacacgaTAGAGTAAGAAGTGCTGCGCGTCACACCAGATCAGGCCCCTCCAGGCTTGTGGCATCTGACTGCTCAGAGTTGACAGAATCTGGAGACTTCTTTGTAGACTGTCAAGACCGACACCTCACCTCCATTCCCACCTCACAGACCTGGTCCAAACAACCAAAGCACCTCCTTCTAGCACGCAACCAGATCAAAGTCCTTCGTGATGGGGCCTTCTTTGGATTTGAGAGTTTAACTAGTCTGGACCTGCAGCAGAATCAGATCTCTTTAGTGGAGGAAGGGGCTTTCCAGGGCCTGACACGCCTTACaaccctgctgctgcagcacaACCACCTGGGAACACTTAGCGAGGAGGCCCTCATCCCCATGCCAAACCTTCGCTACCTACGTCTTTATGATAATCCCTGGAATTGTCTCTGCCCGATGGACAGTCTCGTACGTACCCTACAGGTCCCAAGCAACCGTAATCTAGGAAATCATGCCAGGTGTGCAGAGCCCATCAGGCTGAAAGGCATTAAGTTGAAGCAGATTGACCCCATATTACTTTGTAAGGAGAGAGACCCAACCAGCAACCGAACAGATCCCACAGACCCTGTAAAGCCCATACCAATTCGCATAAGACCAGATGCCACCACATTATGCCATACCTACCTTTTCCCCCAAATACAGGTGGACTGCCGTAAAAGAGGTCTAACCGAGGTGCCTACAGGTATTTCAGAGGATGTTGTTCACATTGATCTGTCCCATAATTCAATTCGTCATCTCAAAGCCAGAAATTTCCAAACAGCGAGGAGCCTCAGAACCCTTAACATCAGTCATAACAATATGGAGCACATTGACACAGCTTCCCTGTTTGGGCTGCTGCACCTTCGTGAGCTGGACCTGTCTGACAACAGCCTGCATTTTATCCAGTACGGAGTTCTTGAAGACCTTTACTTCCTGTCACAGCTAAAACTGGGAGGAAACCCCTGGGTGTGTGACTATAGCATCCACTACATGGTGTACTGGCTGCGTCTGCACCCAGGGGTGAGGCACTCTGGCCTGCTGTGTCACTCCCCTCCTGAACATACTGGGAAGAGTGTAGCGAAGTATGTGCATTCCTACAACGGAGAGTGTCCAAAGGACAGACAGCAAAGCAGAACAGATCCAGACCAATCAAACCCTGAACTATGGAATACACCAATGGAAGTGCAAggagagctggaggaggaggagctggagccGAGCCATTTGAGAGTACCGCAGAAATACCAGATCATCAGGCTGTCCTGACTCAAATGAAAATTTTACCTACAAATTTGACTTAATTTCATTCAATATCATAAAACCGTCTGTATCAGAtagagaaaatacatttttcagtgttg
>XM_039808543.1
TGTTGCCTTctactctccctctccttcagATCTTTGTTCATTCGCTCTGAGCTCTGACTGAGTGCAAACAGTCTCCAGAGCACAGCCAAAAACAAGCGGAGACACGTGGAAAAATAGAGCAGTGACTGGATTTATCCAAGGTGGACTTAAAGCtgaatttttttaaaggaaaaaagTGGTGTCCTGTCTACAGTTGAAGCTGAGTGGAGTCGCTATATACCCAACTGAGAGAAGAATACCAACTGACCTGAGTGCAGCCGGACAGGTTGAGGTGGATGAGATTGTGGCAACCCTTccctgtgttcagGTGTGCAGAGCCCATCAGGCTGAAAGGCATTAAGTTGAAGCAGATTGACCCCATATTACTTTGTAAGGAGAGAGACCCAACCAGCAACCGAACAGATCCCACAGACCCTGTAAAGCCCATACCAATTCGCATAAGACCAGATGCCACCACATTATGCCATACCTACCTTTTCCCCCAAATACAGGTGGACTGCCGTAAAAGAGGTCTAACCGAGGTGCCTACAGGTATTTCAGAGGATGTTGTTCACATTGATCTGTCCCATAATTCAATTCGTCATCTCAAAGCCAGAAATTTCCAAACAGCGAGGAGCCTCAGAACCCTTAACATCAGTCATAACAATATGGAGCACATTGACACAGCTTCCCTGTTTGGGCTGCTGCACCTTCGTGAGCTGGACCTGTCTGACAACAGCCTGCATTTTATCCAGTACGGAGTTCTTGAAGACCTTTACTTCCTGTCACAGCTAAAACTGGGAGGAAACCCCTGGGTGTGTGACTATAGCATCCACTACATGGTGTACTGGCTGCGTCTGCACCCAGGGGTGAGGCACTCTGGCCTGCTGTGTCACTCCCCTCCTGAACATACTGGGAAGAGTGTAGCGAAGTATGTGCATTCCTACAACGGAGAGTGTCCAAAGGACAGACAGCAAAGCAGAACAGATCCAGACCAATCAAACCCTGAACTATGGAATACACCAATGGAAGTGCAAggagagctggaggaggaggagctggagccGAGCCATTTGAGAGTACCGCAGAAATACCAGATCATCAGGCTGTCCTGACTCAAATGAAAATTTTACCTACAAATTTGACTTAATTTCATTCAATATCATAAAACCGTCTGTATCAGAtagagaaaatacatttttcagtgttg

Function

symbol description
lrrc17 Predicted to enable Roundabout binding activity and heparin binding activity. Predicted to be involved in axon guidance and negative chemotaxis. Is expressed in several structures, including digestive system; epidermis; mesenchyme derived from head mesoderm; musculature system; and tail bud. Orthologous to human LRRC17 (leucine rich repeat containing 17).

NR:

description
PREDICTED: leucine-rich repeat-containing protein 17

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039808540.1 True 1654 mRNA 0.50 7 13204676 13209366
XM_039808541.1 False 1600 mRNA 0.50 7 13204676 13209342
XM_039808543.1 False 1189 mRNA 0.47 5 13204676 13209541

Neighbor

gene id symbol gene type direction distance location
armc10 armc10 coding downstream 11932 13188477 ~ 13192744 (-)
LOC120564344 LOC104940834,LOC103371551 coding downstream 17094 13167318 ~ 13187582 (-)
sinhcaf fam60a,LOC107388928,LOC103376222,LOC104940447 coding downstream 38568 13159313 ~ 13166108 (-)
kxd1 kxd1 coding downstream 46580 13155411 ~ 13158096 (-)
LOC120563727 LOC104940840,LOC103375251,LOC104940445 coding downstream 51972 13147847 ~ 13152704 (-)
fam185a fam185a coding upstream 3268 13212809 ~ 13216422 (-)
LOC120564726 LOC103371554,LOC106926584,LOC106963159,LOC101069521 coding upstream 8396 13217937 ~ 13225042 (-)
tmem60 LOC104956518,LOC103371546 coding upstream 34668 13244209 ~ 13246174 (-)
LOC120564570 LOC104956524,LOC103371543 coding upstream 64229 13273770 ~ 13301322 (-)
LOC120564184 dynlrb2,LOC106573385 coding upstream 177200 13386741 ~ 13387986 (-)
LOC120563976 NA non-coding downstream 3013 13200943 ~ 13201663 (-)
G84446 NA non-coding downstream 10970 13193269 ~ 13193706 (-)
G84378 NA non-coding downstream 158647 12977962 ~ 13046029 (-)
G84384 NA non-coding downstream 164230 12991027 ~ 13040446 (-)
G84376 NA non-coding downstream 220616 12972389 ~ 12984060 (-)
G84532 NA non-coding upstream 25632 13235173 ~ 13235410 (-)
G84533 NA non-coding upstream 27110 13236651 ~ 13236861 (-)
G84528 NA non-coding upstream 61711 13271252 ~ 13272529 (-)
G84536 NA non-coding upstream 112641 13322182 ~ 13325258 (-)
G84585 NA non-coding upstream 225198 13434739 ~ 13444612 (-)
G84123 cat,LOC102293651,LOC102204975,LOC102775586,LOC102293936 other downstream 1060130 12141523 ~ 12144546 (-)
G84083 NA other downstream 1316278 11888027 ~ 11888398 (-)
ptpn9a ptpn9 other downstream 1943715 11173553 ~ 11260961 (-)
oaz2a oaz2,LOC104929548,LOC101470759,LOC102200097,LOC106531198 other downstream 2291459 10823286 ~ 10913217 (-)
LOC120564603 NA other downstream 2489831 10706219 ~ 10714845 (-)
G84530 LOC100696427,LOC106963151,LOC107104182,LOC107388919,LOC104956556,LOC102796452,LOC102202152 other upstream 21076 13230617 ~ 13231095 (-)
prr5a prr5,LOC103371545 other upstream 37287 13246828 ~ 13256093 (-)
LOC120564547 fbxl14,LOC103380143,LOC107388938 other upstream 116432 13325973 ~ 13385205 (-)
mafb maf,LOC104941368,LOC104940469,LOC101071510,LOC101484138,LOC103380135,LOC102219741,LOC106520304 other upstream 364290 13573831 ~ 13618786 (-)
zgc:77752 NA other upstream 821563 14031104 ~ 14037716 (-)

Expression


Co-expression Network