wash1 (wash1,LOC102303465,LOC101485180)


Basic Information

Item Value
gene id wash1
gene name wash1,LOC102303465,LOC101485180
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053119.1
NCBI id CM020916.1
chromosome length 42187026
location 15182609 ~ 15189986 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039808565.1
ACGTGCCACGTGCGTGTCGCACAGAGATGCGGAAGTACAGAACCGTTGTTGTTTTGCTAATCAGAAGATagcttcttatatactgtctatggaagATAGCCTAGCGAATTATTCTCGGTAACCGTTACCAAGCAAACAACACCCATGGTCAGGATGACCCAGAAGCACTGCCTGGAGGGCCAGGTGTACTCTGTGCCTCTCATCCAGCCAGACTTGAGGAGAGAGGAGGCTGTCCATCAGATAGCAGATGCATTACTCTACTTGGAGACCATTTCTACAGATATTTTCAGAAGGGTGTCTGACAGTGTAGAGAAGAACCGCAGCCAGCTGCAGAGCGTCACTGACCGGATTAGACTAGCTCAGGCCCGTGTCGACAAGATCAAAGGCAGTAAGAAGGCCACCAAGGTTTTCTCCAGTGCTAAGTACCCGGCCCCAGATCGACTTCGGGATTACTCATCTATCTTTATTGAGGCTACAGACCCCTCCTCACAAACCCGCCCCCGACACAGGATACAGAATAAACTTCGACCCTTTGATGAGAAGGCCTTGCAGGAGAAGTTAATGTATTTCCCAGTGTGTGTGAGCAAGAAGAAGAAATCTgaggatgagacagaggagGGGCTGGGCAGTCTGCCACGCAACATCTCATCTGTCAGCTCCCTGTTGCTCTTTAATACTACAGAGAACCTATATAAGAAGTACGTGTTCCTTGATCCTCTGGCGGGagcagtgacaaaaacacacacaacactagaGACCGAAAAAGAAGAGAAGCCGTTTGACGCACCATTGTCCATCACGAAGAGAGAGCAactagacagacagACGGCAGAGTCTTATTTCTATGTGCCAGACCTGGGTCAGGTACCGGAGATAGATGTGCCATCTTTCCTGCCTGACCTGCCAGGCATCGCAGATGACCTGTCCTACAGTGCAGACCTCGGGCCCGGCTTCGCCCCGTCAGGACCCACACACAACATCCCTGATCTGCCGTCCTTCTCTGAGGAGAGCAACGCacatggaTCTCCGCTCCAACCTAACATttcacctcctccaccaccacctcctcctcctcctcctgagcCTGCCCTCACTCCCACCATTCCTGCAGgagctccccctcctccccctcctccaccacctcctcctgttgACAGCCCCACAGAAGTCTCTCGGTTGCCAAGTTCAGGTCCTGTGTCTGGTACTCCCAACAAGGTGGTTGAGCCGTCAGACGGCCGTGCCAGCCTCCTGGAGTCCATCCGCAACGCCGGAGGCATCGGCAAAGCAAAGTTACGCAACGTTAAAAAACGCAAGATggagaagaagaaacagaaggagCAAGAGCAAGCAGTGGGAGCAGCGTCTACTGGTGGAGACTTTATGTCTGATCTCTTCAATAAACTTGCCATGCGAAGGAAAGGCATATCTGGTAAGGGTCCAGCGGGGGGGGAGTCGGGTGATCCTCCCGCTGGTACCAGCGGTGCATTTGCCAGGATATCAGATGTCATCCCACCACTTCCTGTGCCACATGCGACAACAGACGATGATGACTGGGAGGCATAACATGGACAATGAACACTTAAAGCATTGATAATGAAAGCCTTCGATAGTTTTGTGTACAAAGGACTTACATTTTCCTCCAATCACTTCACAATATTATAAAAAGTGATAAGTTCTCTTGCAGTGTAAAATGGCCAATAATTGGCTTCATAATGAGAAGTGCATTAGTTTGTAGTTAAACAAAACCTCACTAAAACTCCAATAATCAAACAATTTATTGATAATCATATTCattgtaaaacatattttcataaTATTAGAACACTCTAACAATTGTGGAACCATTTCACTAACCACTTTccattaaataaaagtaatttttgAATTACATAACA
>XM_039808566.1
ACGTGCCACGTGCGTGTCGCACAGAGATGCGGAAGTACAGAACCGTTGTTGTTTTGCTAATCAGAAGATagcttcttatatactgtctatggaagATAGCCTAGCGAATTATTCTCGGTAACCGTTACCAAGCAAACAACACCCATGGTCAGGATGACCCAGAAGCACTGCCTGGAGGGCCAGGTGTACTCTGTGCCTCTCATCCAGCCAGACTTGAGGAGAGAGGAGGCTGTCCATCAGATAGCAGATGCATTACTCTACTTGGAGACCATTTCTACAGATATTTTCAGAAGGGTGTCTGACAGTGTAGAGAAGAACCGCAGCCAGCTGCAGAGCGTCACTGACCGGATTAGACTAGCTCAGGCCCGTGTCGACAAGATCAAAGGCAGTAAGAAGGCCACCAAGGTTTTCTCCAGTGCTAAGTACCCGGCCCCAGATCGACTTCGGGATTACTCATCTATCTTTATTGAGGCTACAGACCCCTCCTCACAAACCCGCCCCCGACACAGGATACAGAATAAACTTCGACCCTTTGATGAGAAGGCCTTGCAGGAGAAGTTAATGTATTTCCCAGTGTGTGTGAGCAAGAAGAAGAAATCTgaggatgagacagaggagGGGCTGGGCAGTCTGCCACGCAACATCTCATCTGTCAGCTCCCTGTTGCTCTTTAATACTACAGAGAACCTATATAAGAAGTACGTGTTCCTTGATCCTCTGGCGGGagcagtgacaaaaacacacacaacactagaGACCGAAAAAGAAGAGAAGCCGTTTGACGCACCATTGTCCATCACGAAGAGAGAGCAactagacagacagACGGCAGAGTCTTATTTCTATGTGCCAGACCTGGGTCAGGTACCGGAGATAGATGTGCCATCTTTCCTGCCTGACCTGCCAGGCATCGCAGATGACCTGTCCTACAGTGCAGACCTCGGGCCCGGCTTCGCCCCGTCAGGACCCACACACAACATCCCTGATCTGCCGTCCTTCTCTGAGGAGAGCAACGCacatggaTCTCCGCTCCAACCTAACATttcacctcctccaccaccacctcctcctcctcctcctgagcCTGCCCTCACTCCCACCATTCCTGCAGgagctccccctcctccccctcctccaccacctcctcctgttgACAGCCCCACAGAAGTCTCTCGGTTGCCAAGTTCAGGTCCTGTGTCTGGTACTCCCAACAAGGTGGTTGAGCCGTCAGACGGCCGTGCCAGCCTCCTGGAGTCCATCCGCAACGCCGGAGGCATCGGCAAAGCAAAGTTACGCAACGTTAAAAAACGCAAGATggagaagaagaaacagaaggagCAAGAGCAAGTGGGAGCAGCGTCTACTGGTGGAGACTTTATGTCTGATCTCTTCAATAAACTTGCCATGCGAAGGAAAGGCATATCTGGTAAGGGTCCAGCGGGGGGGGAGTCGGGTGATCCTCCCGCTGGTACCAGCGGTGCATTTGCCAGGATATCAGATGTCATCCCACCACTTCCTGTGCCACATGCGACAACAGACGATGATGACTGGGAGGCATAACATGGACAATGAACACTTAAAGCATTGATAATGAAAGCCTTCGATAGTTTTGTGTACAAAGGACTTACATTTTCCTCCAATCACTTCACAATATTATAAAAAGTGATAAGTTCTCTTGCAGTGTAAAATGGCCAATAATTGGCTTCATAATGAGAAGTGCATTAGTTTGTAGTTAAACAAAACCTCACTAAAACTCCAATAATCAAACAATTTATTGATAATCATATTCattgtaaaacatattttcataaTATTAGAACACTCTAACAATTGTGGAACCATTTCACTAACCACTTTccattaaataaaagtaatttttgAATTACATAACA

Function

symbol description
wash1 Predicted to enable alpha-tubulin binding activity. Predicted to be involved in Arp2/3 complex-mediated actin nucleation and retrograde transport, endosome to Golgi. Predicted to act upstream of or within protein transport. Predicted to be located in cytosol; early endosome; and recycling endosome. Predicted to be part of WASH complex. Orthologous to several human genes including WASHC1 (WASH complex subunit 1).

NR:

description
PREDICTED: WAS protein family homolog 1

GO:

id name namespace
GO:0034314 Arp2/3 complex-mediated actin nucleation biological_process
GO:0005769 early endosome cellular_component
GO:0071203 WASH complex cellular_component
GO:0043014 alpha-tubulin binding molecular_function

KEGG:

id description
K18461 WASH1; WAS protein family homolog 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039808565.1 True 1895 mRNA 0.48 11 15182609 15189986
XM_039808566.1 False 1892 mRNA 0.48 11 15182609 15189986

Neighbor

gene id symbol gene type direction distance location
fkbp4 fkbp4 coding downstream 10406 15163553 ~ 15172203 (-)
b4galnt3b LOC103133797,LOC106915345 coding downstream 23785 15139441 ~ 15158824 (-)
c2cd5 NA coding downstream 51345 15106071 ~ 15131264 (-)
lmf2a lmf2,LOC102783784 coding downstream 76867 15098626 ~ 15105742 (-)
dnaja2b dnaja2,LOC103370603,LOC100703595,LOC101465466 coding downstream 125479 15051850 ~ 15057130 (-)
ptprq ptprq,LOC107705767 coding upstream 29764 15219750 ~ 15261813 (-)
LOC120563965 ptprq coding upstream 44346 15234332 ~ 15237616 (-)
otogl otogl,LOC102779350 coding upstream 72500 15262486 ~ 15291962 (-)
syt1b syt1,LOC100710649,LOC102779835,LOC103358504 coding upstream 108701 15298687 ~ 15304280 (-)
cd9a NA coding upstream 120891 15310877 ~ 15317845 (-)
G85027 NA non-coding downstream 3436 15178340 ~ 15179173 (-)
G85011 ppp6r2 non-coding downstream 119472 15062611 ~ 15063137 (-)
G85007 NA non-coding downstream 124680 15057725 ~ 15057929 (-)
G84948 NA non-coding downstream 227202 14954128 ~ 14955407 (-)
G84971 NA non-coding downstream 330586 14851720 ~ 14852023 (-)
G85084 NA non-coding upstream 171851 15361837 ~ 15363425 (-)
LOC120563611 NA non-coding upstream 263223 15453209 ~ 15455514 (-)
G85121 LOC103364747,LOC103358513 non-coding upstream 265669 15455655 ~ 15458913 (-)
LOC120563610 NA non-coding upstream 265854 15455840 ~ 15456554 (-)
G85125 NA non-coding upstream 276596 15466582 ~ 15472857 (-)
G85014 ppp6r2,LOC103370604 other downstream 109259 15066039 ~ 15073350 (-)
si:ch1073-390k14.1 LOC103375950 other downstream 214826 14961860 ~ 14967783 (-)
LOC120563775 cacna2d1,LOC104952157 other downstream 624381 14501896 ~ 14558228 (-)
LOC120564470 NA other downstream 945657 14223197 ~ 14236952 (-)
zgc:77752 NA other downstream 1144893 14031104 ~ 14037716 (-)
ttc23 LOC104957250 other upstream 282948 15472934 ~ 15484145 (-)
G85133 mef2a,mef2aa,LOC107553916 other upstream 324792 15514778 ~ 15544082 (-)
chd2 chd2 other upstream 965998 16155984 ~ 16187336 (-)
st8sia2 fam174b,st8sia2,LOC100690985,LOC101474125,LOC102798331 other upstream 998867 16188853 ~ 16209186 (-)
G85321 NA other upstream 1249388 16439374 ~ 16440965 (-)

Expression


Co-expression Network