syt1b (syt1,LOC100710649,LOC102779835,LOC103358504)


Basic Information

Item Value
gene id syt1b
gene name syt1,LOC100710649,LOC102779835,LOC103358504
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053119.1
NCBI id CM020916.1
chromosome length 42187026
location 15298687 ~ 15304280 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039808619.1
TGTcatcttttctcctcctcctccacctctgtAAGGAAAAGGAGTACCTGTGAGTCTGGACATTGCTGGGGGGACGACTGAATACAGTTCAATTCTTGATCTGTTGTCACTCCTCAAATAATGACTGGGAACCGCCTTGTTGCCCCAGCTGCACTGGGCACCACCGCTACCCCAACCCACTTGCCAAATGCAACAACCACTCCAGGCCAAAAAAAATCTGGAGGGCACAGTCCCAACAAGTTCATGAGTGAACTGCACAGCATCCACATGCCATCATGGGCTGTTGCTGCCCTTTGCATCGTGAGTTTGTGCGTGGTGCTGtcgtgtgctgtgtgtgtgtggaagaagTGCATGAAAAAGAAGGACAAGGACAAAGAAAAGGAcaagaaaaagggaaaagagaAGAGCAACGGAGGCTTTGACACTGAAATGGATGGAGGTTACAGCGagCCACTGAAAGAGGAAAGTAATAAAGAAACAGAGCTGTCAGATAATGATCCCAAAGAGGAGGAGAAGCTGGGCAAGCTACATTACACATTAGACTACAACTTCACGGATAATACGCTCATAGTCGGCATCTTGCAGGCTGCTGAACTCCCTGCAATGGATGTGGGTGGTAGTTCTGACCCTTATGTTAAACTCTATCTGCTTccggacaaaaagaaaaagtttgaaACCAAAGTTCATAGGAAGACCCTCGAACCCAACTTCAATGAGACGTTCACATTTAAGGTACCATACACTGAGCTGGGTGGGAAGACACTGGTGATGACTGTGTACGACTTCGACCGTTTTTCAAAGCACGATGCCATCGGAGCTGTGAAGATACCGATGAGCCGTATGGACTTCAGCCAGTCTCTGCAGGAGTGGAGGGATCTGCAGAAGgcagagaaggaggagAGTGAGCGGCTTGGAGACATATGTTTGTCTTTGAGGTATGTGCCAACTGCAGGGAAGCTAACGGTGGTGATTTTGGAGGCCAAAAACCTGAAGAAAATGGATGTGGGTGGATTATCAGACCCTTATGTGAAGATCCACTTAATGCAGAATGGAAAAAGactcaagaaaaagaaaacaacgaTAAAGAAGAACACTTTAAACCCTTACTACAACGAGTCTTTCAGCTTTGAAGTGGCGTGTGAACAGCTAGAGAAGGTGCAGATAGCAGTGACTGTGTTGGACTATGATAAGATTGGGAAGAATGATGCCATTGGAAAGGTGCTGCTGGGCGGTAACAGTACTGGGACTGAGCAACGCCATTGGGAAGACATGCTGGCAAACCCCCGGAGGCCAATAGCCCAATGGCATAGCCTCAAACCAGAGGATGAAATCAACGCGCTACTTTCAAACAAGAAATGAAACTGAGTGGGCTATGACCTTGCAGCATTTACCTCAACTACTGTACTTCCAATTTATGTTCCTCTTCCctgaaaaaaatcttaactAAGTAAATCTACCCAATAAAACCCTGTTTTACCCATGACGCTATCCAAGTCACTCTTCTTAAACCTTTTTCCTTCAGTAATTCCCTCCTCCTGCTTCTACCTAAACTGCTACAATGAGTTTTAAACAATGTATCACTATGTACTAAATGTA

Function

symbol description
syt1 Enables low-density lipoprotein particle receptor binding activity. Involved in positive regulation of dendrite extension. Located in cytoplasm.

NR:

description
PREDICTED: synaptotagmin-1

GO:

id name namespace
GO:0006810 transport biological_process
GO:0008021 synaptic vesicle cellular_component
GO:0016020 membrane cellular_component
GO:0005215 transporter activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039808619.1 True 1596 mRNA 0.46 9 15298687 15304280

Neighbor

gene id symbol gene type direction distance location
otogl otogl,LOC102779350 coding downstream 6725 15262486 ~ 15291962 (-)
ptprq ptprq,LOC107705767 coding downstream 36874 15219750 ~ 15261813 (-)
LOC120563965 ptprq coding downstream 61071 15234332 ~ 15237616 (-)
wash1 wash1,LOC102303465,LOC101485180 coding downstream 108701 15182609 ~ 15189986 (-)
fkbp4 fkbp4 coding downstream 126484 15163553 ~ 15172203 (-)
cd9a NA coding upstream 6597 15310877 ~ 15317845 (-)
pgpep1l LOC103364746 coding upstream 152527 15456807 ~ 15463714 (-)
nr2f2 nr2f2,LOC107388818,LOC100705923,LOC108230091,LOC102227842,LOC104957255,LOC106930729,LOC105023478,LOC106573769 coding upstream 498144 15802424 ~ 15811999 (-)
slco3a1 slco3a1 coding upstream 909495 16213775 ~ 16254088 (-)
LOC120563512 LOC104964038,LOC103375536,LOC102794895 coding upstream 1076663 16380943 ~ 16409443 (-)
G85027 NA non-coding downstream 119514 15178340 ~ 15179173 (-)
G85011 ppp6r2 non-coding downstream 235550 15062611 ~ 15063137 (-)
G85007 NA non-coding downstream 240758 15057725 ~ 15057929 (-)
G84948 NA non-coding downstream 343280 14954128 ~ 14955407 (-)
G84971 NA non-coding downstream 446664 14851720 ~ 14852023 (-)
G85084 NA non-coding upstream 57557 15361837 ~ 15363425 (-)
LOC120563611 NA non-coding upstream 148929 15453209 ~ 15455514 (-)
G85121 LOC103364747,LOC103358513 non-coding upstream 151375 15455655 ~ 15458913 (-)
LOC120563610 NA non-coding upstream 151560 15455840 ~ 15456554 (-)
G85125 NA non-coding upstream 162302 15466582 ~ 15472857 (-)
G85014 ppp6r2,LOC103370604 other downstream 225337 15066039 ~ 15073350 (-)
si:ch1073-390k14.1 LOC103375950 other downstream 330904 14961860 ~ 14967783 (-)
LOC120563775 cacna2d1,LOC104952157 other downstream 740459 14501896 ~ 14558228 (-)
LOC120564470 NA other downstream 1061735 14223197 ~ 14236952 (-)
zgc:77752 NA other downstream 1260971 14031104 ~ 14037716 (-)
ttc23 LOC104957250 other upstream 168654 15472934 ~ 15484145 (-)
G85133 mef2a,mef2aa,LOC107553916 other upstream 210498 15514778 ~ 15544082 (-)
chd2 chd2 other upstream 851704 16155984 ~ 16187336 (-)
st8sia2 fam174b,st8sia2,LOC100690985,LOC101474125,LOC102798331 other upstream 884573 16188853 ~ 16209186 (-)
G85321 NA other upstream 1135094 16439374 ~ 16440965 (-)

Expression


Co-expression Network