tspan33b (LOC104940279,LOC100694777,LOC101482493,LOC106573176,LOC105926564)


Basic Information

Item Value
gene id tspan33b
gene name LOC104940279,LOC100694777,LOC101482493,LOC106573176,LOC105926564
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053119.1
NCBI id CM020916.1
chromosome length 42187026
location 28176802 ~ 28192660 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039808663.1
CACAGCCGGCCAACGACCCCCTCTTTTACAGATTCACATGGCGGCTGAGGATCTGCGGGGTGGGGCTCTGTCTGAGGACTGTTTTCGAAGTACTGTAGCTCTATGTGACTgtaacaacagcaacaaacaaTGGACAGGAAACAGAATCTAAACCGAGCCGAGACCTTCTCCTTTGTCAACCCCTGGATCAGatattttctcttcttcttcagctTCTTATTTTGGGTTTTCTCCTTGTTGATTGTTGCCATCGGGGTGTATGCTAAAGTCCAGAAAGCTACAGACGCGGTGCGGGACACGTTCCTGATCGACCCAGCTGTCATCCTAATTGTGGTGGGGGTGGTCATGTTCTTCATCACTTTCTGTGGTTGCATTGGAGCCCTCCGAGAGAACATTCGCCTTCTCAAGACATTCTCCTTCAGCCTGACATTGGTCTTCCTCACCCAGCTGGCCATAGCAGTTCTGGGCTTCTTCTACTCTGATCAGACTCGTGATGCTTTGGGAAAGTTTGTGAAGAAAGCCATCGTGCACTACAGGGATGACCTGGATCTGCAGAACCTGATGGATTACATCCAGAAAGAGTTCAAATGTTGTGGGTGGAACAACTACACAGACTGGTCTTGGAACCTGTACTTTAATTGTACAGATGAGAACCCCAGCTCCGAGCGCTGTGCTGTGCCTTACTCCTGCTGCACTCCTGTTTCTGGAGAGACAGTTATCAACACTATGTGTGGTTTtgggattcaaacccagaacTTTCTGGAGGCAAACAAGTCAATCTACCCGGTAGGCTGTGCGGACAAAGCAGTGATATGGATCGAGTCTCATCTGTTGCTGGTGGGGGCTCTCGCCCTTGGTCTGGCCTTGCCTCAGATTGCAGGCATCGTGCTGTCCCAGATCCTGATCTCTCAGATCCAAGATGAGATTATCTCGGTGTTGTGAGAGCAGGCCGACGAAGgggaagaggagggaagaaaagaactatatatactatatgtgCAAGGACATCTTTTTTACTGCTACTGTATCACTGCGACATTGGAGTTCATTTCACATTCTTTTTGTGCTGTTGCCTACAAGCATAACATTGCTAATAAAATTCAAAAGAAGAAA
>XM_039808664.1
CCACAGCCGGCCAACGACCCCCTCTTTTACAGATTCACATGGCGGCTGAGGATCTGCGGGGTGGGGCTCTGTCTGAGGACTGTTTTCGAAGTACTGTAGCTCTATGTGACTgtaacaacagcaacaaacaaTGGACAGGAAACAGAATCTAAACCGAGCCGAGACCTTCTCCTTTGTCAACCCCTGGATCAGatattttctcttcttcttcagctTCTTATTTTGGGTTTTCTCCTTGTTGATTGTTGCCATCGGGGTGTATGCTAAAGTCCAGAAAGCTACAGACGCGGTGCGGGACACGTTCCTGATCGACCCAGCTGTCATCCTAATTGTGTTCTCCTTCAGCCTGACATTGGTCTTCCTCACCCAGCTGGCCATAGCAGTTCTGGGCTTCTTCTACTCTGATCAGACTCGTGATGCTTTGGGAAAGTTTGTGAAGAAAGCCATCGTGCACTACAGGGATGACCTGGATCTGCAGAACCTGATGGATTACATCCAGAAAGAGTTCAAATGTTGTGGGTGGAACAACTACACAGACTGGTCTTGGAACCTGTACTTTAATTGTACAGATGAGAACCCCAGCTCCGAGCGCTGTGCTGTGCCTTACTCCTGCTGCACTCCTGTTTCTGGAGAGACAGTTATCAACACTATGTGTGGTTTtgggattcaaacccagaacTTTCTGGAGGCAAACAAGTCAATCTACCCGGTAGGCTGTGCGGACAAAGCAGTGATATGGATCGAGTCTCATCTGTTGCTGGTGGGGGCTCTCGCCCTTGGTCTGGCCTTGCCTCAGATTGCAGGCATCGTGCTGTCCCAGATCCTGATCTCTCAGATCCAAGATGAGATTATCTCGGTGTTGTGAGAGCAGGCCGACGAAGgggaagaggagggaagaaaagaactatatatactatatgtgCAAGGACATCTTTTTTACTGCTACTGTATCACTGCGACATTGGAGTTCATTTCACATTCTTTTTGTGCTGTTGCCTACAAGCATAACATTGCTAATAAAATTCAAAAGAAGAAA

Function

NR:

description
tetraspanin-33-like isoform X2

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039808663.1 True 1113 mRNA 0.48 8 28176802 28192659
XM_039808664.1 False 1036 mRNA 0.48 8 28176802 28192660

Neighbor

gene id symbol gene type direction distance location
tbxas1 tbxas1 coding downstream 365722 27799006 ~ 27811080 (-)
ccdc113 NA coding downstream 385828 27786672 ~ 27790974 (-)
LOC120564488 LOC101485419,LOC102777949,LOC104949269,LOC102291458,LOC100702099 coding downstream 500944 27673598 ~ 27675858 (-)
uri1 NA coding downstream 507330 27655464 ~ 27669472 (-)
cry1b LOC103363998,LOC102799801,LOC100703716 coding downstream 935864 27229826 ~ 27240938 (-)
cracr2aa LOC103365762 coding upstream 326398 28519058 ~ 28543251 (-)
utp4 utp4 coding upstream 766730 28959390 ~ 28974789 (-)
has3 has3 coding upstream 796295 28988955 ~ 29018749 (-)
tango6 tango6 coding upstream 831617 29024277 ~ 29067687 (-)
c8h11orf49 LOC104936424,LOC102313439 coding upstream 1093056 29285716 ~ 29295960 (-)
G88513 NA non-coding downstream 194508 27975965 ~ 27982294 (-)
G88510 NA non-coding downstream 201141 27975181 ~ 27975661 (-)
G88467 NA non-coding downstream 476867 27699620 ~ 27699935 (-)
G88405 NA non-coding downstream 752167 27420437 ~ 27424635 (-)
G88391 selenoo non-coding downstream 798784 27376859 ~ 27378018 (-)
G88596 NA non-coding upstream 325496 28518156 ~ 28523417 (-)
G88613 NA non-coding upstream 600052 28792712 ~ 28792984 (-)
G88625 zc3h18,LOC102790709 non-coding upstream 664811 28857471 ~ 28940229 (-)
G88636 NA non-coding upstream 695344 28888004 ~ 28889684 (-)
G88706 NA non-coding upstream 898370 29091030 ~ 29093595 (-)
LOC120564781 NA other downstream 351841 27812245 ~ 27824961 (-)
LOC120564276 LOC103371718,LOC104949276,LOC102797857,LOC100696892 other downstream 526740 27623990 ~ 27650062 (-)
G88379 panx2 other downstream 821026 27354972 ~ 27355776 (-)
zgc:153031 LOC100703984,LOC102237950,LOC106523206,LOC105917737 other downstream 947430 27223962 ~ 27229372 (-)
G88249 mthfs other downstream 1162391 27013237 ~ 27014411 (-)
G89085 NA other upstream 2529448 30722108 ~ 30722503 (-)
G89241 NA other upstream 3050508 31243168 ~ 31268469 (-)
G89365 NA other upstream 3913963 32106623 ~ 32108066 (-)
fa2h fa2h,LOC106937201,LOC102797665,LOC107674969,LOC107707436,LOC107589178,LOC104955910,LOC107714073 other upstream 4594138 32786798 ~ 32851495 (-)
znf319b znf319,LOC102797175 other upstream 4713345 32906005 ~ 32913030 (-)

Expression


Co-expression Network