myo5c (myo5c)


Basic Information

Item Value
gene id myo5c
gene name myo5c
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053119.1
NCBI id CM020916.1
chromosome length 42187026
location 19285472 ~ 19296087 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039808687.1
gggggataGTCGTTGGTAACCTGGAAGGTACAGTGGATACAACAGCTGAAGTATACGGACAAGAGAAGTTAAAACAATAATGCATAAATATGGCTTTGTTGGAACTGTACACCGAGTACAACAGAGTGTGGATACCAGATGCAGAACATGTGTGGAAATCAGCCGAGATTATGAGAGACTTTCATTTTGGGAATAATGTTCTTGAATTGCTTCTTGAAGATGGCACTGAGTACTGCTACCCTGTTGACCCATCAAAACCACAACTCCCTCCACTTCGCAACCCGGACATCTTGGTGGGGGAGAACGACCTCACCGCTCTCAGCTACCTGCATGAACCTGCAGTCCTGCATAATCTTAAAGTGCGATTTGTGGAGTCCAGAATCATCTACACCTACTGTGGTATTATACTGGTCGCTGTAAATCCATACAAACAGCTTCATATCTATGGAGATGCAATCATTCATGCATACTCAGGCCAGAACATGGGAGACATGGACCCTCATATATTTGCAGTGGCTGAGGAGGCTTACAAACAGATGGCCAGAAACCACAAGAACCAGTCTATCATCGTCAGTGGTGAATCTGGAGCCGGTAAAACAGTGTCTGCTCGATACGCTATGAGGTACTTTGCTGTTGTAAGCAAATCTGGAAGTAAGACTCGAGTTGAAGACAAAGTCCTGGCATCCAATCCGATAACAGAGGCAATAGGAAACGCAAAGACCACCAGGAATGACAACAGCAGCcgttttgggaaatacacagAGATCAGCTTTGACAGGAGGTACCGGATCATCGGAGCGAACATGAGGACCTATCTCTTAGAGAAATCCAGAGTTGTTTTTCAGGCAGACAACGAGCGAAACTATCACATATTCTACCAGATGTGTTCCTGTGCTCATCTGCAAGAGTTCAAGAATCTAAgactgtTGAGCGCAGATAAGTTCCGGTACACCTGCATGGGCGGTGAGATCACTATTGAAGGCGTAGATGACGAGAAAGACATGGAGGAGACTCGACGGACCTTCTCGCTGCTAGGGTTGAAGGAGGACTTTCAGTCAGATGTGTTCCAAGTTTTGGCAGCCATTCTGCATTTGGGAAATGTGGAAATCCGAAACTCTGGAGATGGCAAATCATCAGTTCCTCCCAGTGACCCACACCTGGCAGTCTTCTGTGAGTTGCTGGGTGCGAGCGCAGACGGGTTGGGGCGTTGGCTGTGCCATCGGAGGATCGTTCTGGTGGCTGAGACGGTGGTGAAGCCGGTGCCCAAAGAGCGGGCAGTAAATGCCAGAGATGCCCTAGCCAAGCAGATCTATGCCCATctgtttgactgtattattaACAGGATAAACACAGCACTTCAGGTTCCAGGAAAGCAACACGCTTTCATTGGTGTTCTGGACATTTATGGCTTTGAAACGTTTGACATCAACAGCTTTGAACAGTTTTGCATCAACTACGCAAATGAAAAGCTTCAACAGCAGTTTAACTTGCATGTCTTCAAGCTGGAGCAAGAGGAGTACATGAAAGAGGACATCCCATGGACGTTGATAGATTTCTATGACAACCAGCCGGTCATTGACCTGATTGAAGCAAAAATGGGGATCCTGGACTTGCTTGATGAAGAATGTTTGTTTCCTCAGGGCACTGATCAAAGCTGGCTGCAAAAACTGTTCAACTATCTTGATGCCAATCCTCTGTTTGAGAAGCCCAGGTTATCAAATGAGGCATTTGTGATTCAACACTTTGCAGACAAGGTGGAATATCAATGCAGAGGCTTTCTTGAAAAGAACAGAGACACTCTCTATGAAGAGCTGGTTGACATTATGAGAGTCAGTAAGTTTCCTTTTCTGGCCAACTTTTTCCAAGAGGAGAAAAGCACTGTGACCACTAAAGGTGTCAAAGTGAGGCCCGCTAGACCTGCAGTGAAACCAGCCAATAAACAGCTGAGAACCTCAGTGGGAGATAAGTTCTGCAGCTCCCTCTCTCTACTGATGGAAACACTGAATGCTACCACCCCTCACTATGTACGCTGCATTAAGCCCAATGATGAAAAGCTCCCATTTGAATATGATTCCAGGAGGGTGGTGCAGCAGCTGCGAGCCTGTGGAGTCCTTGAAACTATTCGTATCAGTGCACAGAGCTATCCGTCCAGGTGGACATACATTGAGTTTTACAGCCGATACAGTATCCTAATGTCACACCAGGAAGGGGACCTCAGTGACAAGAAACAGACCTGCAAGAATGTGCTGCAGAGGTTGATTCAGGACCCCAACCAGTACAAGTTTGGTCGGACTAAGATCTTCTTCCGAGCTGGTCAGGTAGCTTATCTCGAGAAGCTGCGTCTGGACCGACTGAGAGGAGCGTGCGTGACCATCCAGAAACACGTCCGcgggtggagccagaggaggaaGTACCTGCGCATGAGAGACGCAGCCATCATCCTCCAACTGTACATCCGTGGAAAGAGGACAATCCGtaAAACAGTGAGTGCTGCAACACTGAAGCAGGGCTGGGCAGCGATGGTGGTCCAGAGATACTGGAGAGGTTACCGCATGAGACAGATCTTCCAGTTGGTCCGTCTGGCCTCCATCACCATCCAGGCCTTCACACGAGGTTGGATGGCCCGTAAACGGTACAAGAAGATGGTAGAGGAGCAGAAAGCCCTGATTCTACAGAAGTATGCCAGAGCATGGCTGGCACGGCGGCGTTTTCAAACCATGCGTCGGCTGGTGCTCAACGTACAGCTCTCCTTCAGGGTGCAGAAGCTCAGAAAGAAGATTGAAGAGCAGAACAAAGAGAACCGTGGATTGATGGAAAGACTGACAAGCTTGGCCAACTCCCACTCTCAAACCGTGGACAGACTTCAGGGTTTGGAGGCACAGCTGGAAAAATCAACCAACCAGAAGGCGTCTTTGGAGGCAAGAGAGAAGAAAGCGAAAGAAGATGCTAGCCTGACAACTGCACAGCTTCAAAGGGAAATAGATGCACTGAACTTTGAAAAGCAGAACTTGGAGAACAAGTTTGAAGCTTCCACCAAAGAGGCCAAAGAAAGCTTTGATCAAATAAAGAGGAACCTTCTGGAAGAAAAAGAATATGAAGCCAGGCTTAGAAAAATTGCAGAGAACAACATTGAGATCCAGAGACAGGACCATGAGAAGTTGGTGGAAACACTAAAAGAGGAGATTAAGAGattgaaagaggagagagtCAGTCTGCAGAGAAAGATGGAGGACGAGGGCAAGGTAAACTCTGACCTGCAGGAACAGGTCATCCAGCTCACCAAACATGTCAAGACCATTCCCGAGCTACGCAGGGAACTCAACAACCTGCAAAACCAGAGAAATAACATGGACCGAAAGATGAAGCAACAGTCGGAACAAGCAAGAGCTAAAATGAACGATATTACGAGACAACTTCTTGGTGGCGTTGTTGAAGAGGAGGTTCTTTTGGGGCTAACTCCAAACGACTCTGAGAAGATTTATGAAGTTGAAGATTTGCTGGCAGCCTTTGATGGCCTACAGAAAGCTACCAGAATCCTGGAAAGCCACCAGAGGGAGCAGAAGGAGAGCTATGAGACCCAAGTGGAGGGTTTGAAACTGAAAGTGGATCACCTTCAAAATGAGAACAGCAAGTTGCAAAACCTGTTCCAGGAGAAAAGTAATGTCAATGAGAATATTCGCCAAGAAGTGTCCAGGCTCAGCAGCGAGAACTCAGTTTTACCGGAGCTGAAACTGCAGGTCTCAGAGCTGCAGAGACAGAAACAAGAACTGGAGGCTCACATAGTGGAGCAGAGCAGAGAACTAGCAGaaaaaactgaggagaTCACTAACGTTCTTCAAAGAAAGATTAAAGAAGAGAGCTCACGACGCAGTCACTTTGAGGAGAAAGCTGAAGAGCTGGAGGAGTTGAAGAGGGAGCTTCAAGGCAGAGTAGAGGAGCTGGAAGAGGAGAATGATCACTCGAAAAGACAGCTGCTGATGGAGAGTGAGGCCAAGAGCAAACTGAGACAGGAGACTTCACAGTTAACTGCTGAaaatatgGACTTTGAAGAGCAGCTCGACCAGAAAGATAGATTAATAAAGAAACTCCAGAATCAAATAAAGAGCCTTGAAACATCACAGAAAGCGAAGCAAACGTCTGCTCCTGCCATGCCCAAAGATTACCTTGGCATGTTGGAGTACAAGAGAGAGGATGAATCCAGGCTCATTCAAAACATCATTCTGGACCTAAAGCCCAAAGGCGTGGTGGTCAGTGTGATCCCCGCGATGCCAGCTTACATCCTCTTCATGTGTGTCCGCCACGCTGACTACCTAAACGATGAAGTCAAACTCAAGTCTCTAATGACCGCGATCATCGGTGCTGTCAAAAAGGTCATCACGagtCATCAAAAAGACTTTGAGATGCTGTCATTCTGGCTCTCAAACACGTATCAGCTGCTCAACTGTCTGAAGCAGTACAGCGGGGAGGAGGAGTTCCTGAAACAAAATACTGCTCGCCAAAAAAAGAACTGCTTGCAGAATTTTGATTTGTCTGAACACAGACAGATTCTCAGCGACCTGGCCATTCAAATCTACTATCGGTTTCTCTCGATCATTGAAAAGACCCTCACTCCTACAATTGTACCCGGTATGTTGGAGCACGAGAGTTTACAGGGGATTTCTAGCATGAAGCCGACGGGTGTCAGGAAGCGTTCCAACAGCATCTACGAGGACTCCGAGACATACACCATCTCCTCCATCCTTCAGCAGCTCAGTGTCTTTCACTCCACCATGAGCCAGCATGGCATGGAGCAGGGCCTCATCAAACAGGCTGTCAAGCAAATGTTTTACCTAGTTGGTGCGACCACCCTCAACAACATCATGCTCCGCAAAGATATGTGCTCCTGTAGGAAGGGAATGCAAATCAGGTGTAACATCAGTTACCTGGAGGAATGGCTGAAGGAGAAGGAACTGCAAAGCTCTAATGCTATAGACACTCTGAGGCCGTTGTCTCAGGCCGCCTGGTTACTGCAAGTCAACAAGTCCACTGATGAAGACGCCAAGGAGATCACTGAAAAATGCCCCGAACTCAACCCCGTTCAGATTGTCAAGATTTTGAACTCCTACACTCCCATCGATGATTTTGAGAAAAGGGTGACGTCATCATTTGTCCGCAAAGTTCAGTCGTTACTACAAGATCGTGACGGGTCCACACAGTTGATGCTGGACTTAGACTATCGTTTCCAGGTCACGTTTCCTTTCTGTCCGTCCTCGCAGGCTCTGGAGCTGCTGCAGGTCCCGAGCAGCCTTCATCTGAGTTTTTTAACCAGGATCTGACACTGCCAGCCTTTGACCTTTCACTCCTCATGACTGATTAATAGTATCTGTATCTTATTGTTTATTTGAACACATTAAATTAACAAGTGAACACCATATAATTAAAATTCAAGGCTATGACCAGGATTTTTAAATTCAGAGGTCATGTACCCCCAAaaggaaagatttttttttaaaataaattcttGGATTGTCATATTTTATTTCTGCAACCAACATCCTTAAATCTATTAGTCATCCACagaaaattaataattaatcgtttcagtcatttttcaataaaaaactcaGCCAGCCATTctctggtttcagcttctccAGTGTGGggatttgttgcttttctctgttttatatcattgtaaacggAATATCATAGAGTTTGGGCTGTTGGTCATAACAAAACAATCCATTTAAAGACGTAAAAACATTTATATCCCAACATAAAGGGCTAAATGCTGTATAAAACTGTTCTTGTTGGGTTCAAAAATATCTTAAAAGTTGGCACATCTAAATATAGTAGGTCTAAAAATACTGAAATACGAGCCAATGAAATCCGGCAACTAAGGACATGACCTAAATGTTGTCAGTGGTAGCCATGGCCTGTTAAAATGTGAAAGTGGAATCAATAAAAATCAACAGTATTTTGAATTATTAACTCAAAACATGATTATataaacaattttaatatatttctttctttatatTTCTTGTAGCAGttgtttaatataaaaaaacgtGTTTGCTGaataatta

Function

symbol description
myo5c Predicted to enable actin filament binding activity and microfilament motor activity. Predicted to be involved in actin filament organization and vesicle transport along actin filament. Predicted to be part of myosin complex. Predicted to be active in actin cytoskeleton; cytoplasm; and vesicle. Is expressed in intestine. Orthologous to human MYO5C (myosin VC).

NR:

description
PREDICTED: unconventional myosin-Vc isoform X2

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0016459 myosin complex cellular_component
GO:0005524 ATP binding molecular_function
GO:0003774 motor activity molecular_function

KEGG:

id description
K10357 MYO5; myosin V

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039808687.1 True 6068 mRNA 0.45 40 19285472 19296087

Neighbor

gene id symbol gene type direction distance location
gnb5a gnb5,LOC103380486 coding downstream 175 19281117 ~ 19285297 (-)
ap4e1 ap4e1 coding downstream 5274 19269748 ~ 19280198 (-)
LOC120564055 NA coding downstream 21108 19249998 ~ 19264364 (-)
clpxb clpx coding downstream 38092 19233210 ~ 19247380 (-)
LOC120564071 NA coding downstream 52760 19230226 ~ 19232712 (-)
LOC120564048 LOC103363116,LOC100694407,LOC102201394 coding upstream 906 19296993 ~ 19313663 (-)
rsl24d1 rsl24d1 coding upstream 22800 19318887 ~ 19322671 (-)
LOC120564050 LOC104931415,LOC103363123,LOC104960120 coding upstream 27712 19323799 ~ 19339115 (-)
LOC120564015 rfx7,LOC100694937 coding upstream 45523 19341610 ~ 19358244 (-)
LOC120564004 LOC103363835,LOC104931412,LOC104960084 coding upstream 101151 19397238 ~ 19415937 (-)
G86337 pfcyp19b-tstr non-coding downstream 17035 19268211 ~ 19268437 (-)
G86253 NA non-coding downstream 153306 19131851 ~ 19132166 (-)
G86195 tph1 non-coding downstream 273391 19010925 ~ 19012081 (-)
G86072 NA non-coding downstream 516334 18767495 ~ 18769138 (-)
G86064 NA non-coding downstream 524396 18757052 ~ 18761076 (-)
G86394 NA non-coding upstream 72672 19368759 ~ 19369056 (-)
G86395 NA non-coding upstream 74920 19371007 ~ 19374939 (-)
G86400 LOC101161482 non-coding upstream 87532 19383619 ~ 19384007 (-)
G86430 NA non-coding upstream 229600 19525687 ~ 19527137 (-)
G86432 NA non-coding upstream 234489 19530576 ~ 19531622 (-)
LOC120564082 svip other downstream 124985 19156758 ~ 19160487 (-)
G86194 tph1 other downstream 274556 19007196 ~ 19010916 (-)
syt7a LOC102215913,LOC101470916,LOC102782335,LOC103466506,LOC103141308,LOC107388681,LOC100690092 other downstream 589374 18614588 ~ 18696098 (-)
tmem258 NA other downstream 782606 18499319 ~ 18502866 (-)
lctlb lctl,LOC104967861,LOC107388717,LOC106956364 other downstream 1237632 18041628 ~ 18047840 (-)
arpp19b arpp19,LOC100693429,LOC102791975,LOC106919339,LOC101065895 other upstream 19298 19315385 ~ 19317478 (-)
G86402 LOC103363837 other upstream 91735 19387822 ~ 19388575 (-)
cep152 cep152,LOC104960117 other upstream 261365 19557452 ~ 19573688 (-)
G86638 NA other upstream 956552 20252639 ~ 20259259 (-)
LOC120564033 LOC103358331,LOC102195670 other upstream 1510795 20806882 ~ 20829235 (-)

Expression


Co-expression Network