LOC120564050 (LOC104931415,LOC103363123,LOC104960120)


Basic Information

Item Value
gene id LOC120564050
gene name LOC104931415,LOC103363123,LOC104960120
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053119.1
NCBI id CM020916.1
chromosome length 42187026
location 19323799 ~ 19339115 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039808689.1
ACAGCACGCAGGAGAGCGGCGGTTCGCGGTGGAGGAAAATGACTCAATAATCCGGATAAATGgcaaagtttaagatgaaagtATACCAGGACtggctttttttggttttgtttcttCCTTTATCAAGTGTTTTGTGTTTCAGCGAGTTGTCTTTCATCACAGAGCCCAGTGATGTTACCTTACTACCAAAGGACCCTGCTGTCTTGGACTGTCAGGCTCATGGGCTGCCTCCAGTCACTATCAAGTGGCTGAAGAATGGAGTTCGGTTGGCTGAAAGTGAGCACATACAGTTTCTGCCCAACGGCTCCTTGTACATACCAAAGATAAAGCATACCAAGGAAGATTCAGATGAAGGATTCTACCAGTGCCTCTCCCAGAACAAATATGGAGCTATCCTAAGCCAAAGATCACGTCTGACTATCGCAAgTATCTCAGAGTTTGTGTTACATCCTGTGCCTATGCTGGTGACTGAAGGCTCAGTGGGACGATTCTCCTGTGCTGTCACCTCCAGCCCTCCCGCCACAATCACCTGGGAGCTCAACCAAAGCACATTACCACTACGAACAGACAGAATAACGGTTTTGCCCAATGGAGTACTTCAGATCCACAATGTACAATTGGAAGATGCTGGACAGTATCGATGTGTGGCAACTAACATTGGTAGCCGTTTGAAGAGTAAAGAGGCCACACTGACAGTCAGCCAAGGTGTAGACCCTAAACCACCTCAAAGGCCCAGAATCATTGCTGGACCTCAGAATGTCACAGTTTCTCTTCACCAAACTGTGGTGCTGGAGTGTGTGGCCACAGGCAATCCCTGGCCCATCATCTCCTGGAGCCGTGCTGACAGTAAACCCATCGATGTGTACAACGCCAAAGTGCTGGGCAATGGGAACCTGGTTATTACTGATGTCAATTCCAAGCACAATGGAGTCTACCTCTGCAGGGCCACCACCCCTGGAACCCGCAACTACACTACTGCTGCAGCCAACCTCACAGTTCTAGTGCCACCATCCATCGTCGAGAGGCCCGAGAGCCAGACCCGTCCAAGAGCAGGCACTGCCCGTTTCATGTGCCAAGCAAAGGGAGTGCCCCCGCCACTCATTAGCTGGCTAAAGAATGGAGAAGAGGTTCACTTAAATGGGAGGATTAAGATGTACAACAGTAAATTGGTGATTACCCAGATCATCCCTGAGGATGATGCCATCTATCAGTGCATGGCAGAGAGTGAACAGGGTTCTGTCCTGTCATTAGCTCGCCTTATTGTTGTCATGTCCGAGGACAGGCCCAGTGCACCAAGAAATATTCATGCTGAGACCATCTCGAGCTCTGCTATCTTACTGGCCTGGGAGAGACCTCTCTACAATGCAGACAAAGTCATTGCCTACTCCATCCATTATATGAAGGCTGAAGGTCTAAACAACGAAGAATACCAAATTGTTATTGGCAACGACACGACCAGCTATATCATCGATGACCTTGAGCCAGCTCGAAACTACAGCTTTTACATTGTGGCTTATATGCCAATGGGAGCCAGTCGTATGTCAGACCAAGTCAGTCAACATACCCTGGAGGATGTGCCTTTGCGTACCCCAGAGCTAAGTCTGACTAGCCAGAGCTCCACAGATATTCAGGTAACTTGGCAGCCGCTGCCTGCCAAAGTGAGTCGCGGCCGGTTGTCTGCATACAGACTATCCTATCGTACAGCTGCGGACAGCACTGTCACCTCTGTGGAGTTACCTCAGAACAGCACCGAATATCTGCTGGAGGGCCTGCAGCCTGACACCATCTACCTGCTCCGCATGGCTGCAGCCACCCGTGTGGGCTGGTGTGAGCCTTCTGCATGGACCTCGCACCGTACACCTAAGACATCCAGCAACAAAGTGCCTTCAGCCCCTACTCTTCAACTTGAGCCGCTTAACTGTACCTCCATTGTGGCACGCTGGCAAACATCCCCACAATCTGTGGCTGTCCAGGGTTACCGCCTGTGTTACCATGAGGAAGGCCAACCAGAGCAGCCCATCATCAAGCTACAGGCTCAAACCGATACCTACACCATCAGTGGCCTCGATCCAAGGAGAAAGTATCATGTCAAGATTCTGGCTGTCGGTCAAGCTGGAGATGGCTATCAGacagaccaaacaattaatACTCCGGGATGTGTGTCAGCTAGAGACCAACTGGAAGCAGCCCCTCCGCCTCCAGATCATGTGACTGTCTTGGCCAACAATTCATCTGCAGTGTCTCTGCGCTGGAGCCGTCCTGCTTTCTCCTCTGGAAAGGCTGTTAGCTATACAGTCCGTTGTACACCTGTGGGCACCCACAACGCCTCTGCTATACGCTACCTACAAACTACGAGACAGAGTGTGATGGTTCAGAATTTGGATCCAAACACTCGCTATGAGTTTGTTGTGCGTCTCCATGTGGACCAGATGTCGAGTCCCTGGAGTTCTGTTGTTTACCATCAGACTCTGCCAGCAGCACCTAGCCAACCACCTGCAGGAGTGCGTGTAACTCTGATCGAGGATGACACTGCTCTGGTGTCCTGGAGGGAGCCCACAGAGCTCAATGTGGTGGTTACACGCTATACCATCTTGTACGCTTCCCAGAAAGCCTGGATGGCTGGACGCTGGCAAATATTACAGAGGGAGGGAAGCCACACAATGGCCCTGCtggagaagctggaggcagGGAATGTCTACCTGGTGAAAATCTCTGCCTCCAACCAGGTTGGTGATGGGCCTTTTTCTAACATTGTGGAGCTGGCACTGAAGCGTGGAAACACCCACCGCAGCAAGAACCCCAGACACTCTGACAGCTTCCCACATACAACAGTGTCTTCTGATGGTATCTACCACATAGACCAGAGGTCTATGACAGGGATCATTGTTGGTGTGTGCATCGCCTTGGCCTGTATTGTTATTTGTGCCTTAATCCTCATCAGTAAGGGCAGACCAAGAAAATCCTTCAGTCACAAAGTAATTGCTGTGGGAGCTGCTGAAGTTTCACATGCTGGTTTGCCCCTGCCTAATAATCACCATACAGAGAATGCTGAGGCCCTCATACCCATGATAAGTCACCACTTTCTAGATGCCAAGGGTGGAGCTAATATGGTCATAAATAGTGCCAGtcaaatcaccagcaataatcaAAGCAAGAGATGGCTGCTCTTCAAGAGGGAGATAAGGAATCCAGCTGAAAGTGATGCTGAGAGGAGAGCCAGCTTGTATGAGGCTGGCAAAACTGTTCTGAGGTATGAGGGGCATTTAGGTTCAGCGCCCCTGCCACCTTCGTCCCGAGAGATCATCTACGGACCTTATCACTCGGAGAGCTCTCACTCCAGTGAGGGCAGCCAAGAGACGGGAGACTCTGGACACTACTCCAACGAAGAAAGCAATGAAGAGATGAGCAACCCTTCGACCAGCCAAAGCTCCAGACCTGAATCTTTTGGGCCTGACGATGGTACCACTGTCGCTGAGCTGAAGCAGTCTTTTGAAGTGGAAAACGAGGAGATGCTGAGCCATCCTCTCCATCACTTCGCCCCTGATGCTATCCGGTTCTGCTGCACCTCAGAGGGCTCTCATCCTGCCCTGCACACATCCCAAGCAGTCGGCTCCTGACATCGCCCAGCCTGGATCTACTCCACTTCTACCTCTTGGATTCCTGAGTTGAGCCCCTCGGTTATTTCTTGAGGCACAAGGGACCAGGAAGCTAACTGCTGCGATGGACGAAATGTGCTTTTGCTTCGGATCTACCTCAGGATTTTGTATGAATGTttgtaataacattttatttccattttttttcatacctgttttgtctgtgtttggtGTTGTCTGTCCTAAACCAAAGCTCACCCATGATGAATGTTAAaaagaatgttaaaaatgtactATGATACATTTTCATTACATTGAATTACTTTCCACTGGAACAGAGGGTGTAATTAGACCCTGATGACTGATTATCTACCTTTGTGTTCTGTGTTTACATTACTACCTCCTTTTTACCACATATTGTGCAGTATTATCTCAGACTCAGGGGACAAGGTGAAAATATGTCATTGCCATATCTGTTGGGGGCGTTATTATCTAGAggtcctcatttttttttattctctgaACTTTTATTTTCACGGTTGAAAGAGCTTTTGTTTTACATTGTTTGTCTTTGAATGATATACTTTGTGTTGTGAAAATAAGTGCATTAGATATTGTCAAACTATTTGAGCTATCATACAATATCGTTTGGCATTTCCAGTGCACTGAACTCAAAGCTTTAACATGGCCTTAATATCGAAAGGGCTTTGTGTACTATAAGAATAAGAGATCCAAAGACGGGAAAAATTGTACCCAAAGAATTTTTGATAATACAATAGATATTGTAAGGCAACCAAAAATATAGAGGATATACATTAAGGGTGCGTTTGCCAAAATATTGTTCTTGCCAATGATGTAAATTTCCCTTAGAATGGTGGTTTGAATGCTTTTCGCAGTGTACATTTTCTTGATGCTTTATTCAGGTGGAAGCTTTAGCACAAGACTCTCCGGCTTGTGTTCCATTTGCCTTGTAGACCATTGCTTAACGCAGCGGTGATGCCGATGCTATTATCCAAAGAGTTGTCTCCTTCCTCAGATGGGTGTGGCTTTTCATTCAGTTGATCCTTGGTACTATAAGGTGGACATATTTGACACAAGACCAAAGATCAAGTTTGTCCTGCCAATGACAGATGATGATATTTATTCTTTGTTTAGAGAATCATCTGTTACCGATCACGAATATTGCTGTATGGGGAAGAATTCTTTTTTACTCTCCATAATAATTCCTGTCCAGGTGTGACAATGAAGGATTCTGACTATCAAAATGGAAACCCTATGTGTGAAGAGCAACATAATCAATTTTTATATCTTTGTAATACAAATAATCCTAACCAAAGAAATTTGAAGTCTCTGTTATTTAGTGATTTTCTTTGGTTTTCATTTACATtatttgcatttaaatgtgATATAATTTCCAATGGTTTTGATTGCTAGAAAGgcattttcacagtttttttttcaaagcttgAGATGTCACCATGATATTTTACCTGAATGATACTTACGTAGGTTATATtggtaattattttcatttagatTCTTTTTACCATGAcgtaaacaaaaacatttccaaatttaaatgtgacattttACTAAATTAATAAGGCTGATTTCAAGTTCAAAGTTTCTCTGTGTAATGCATTAATATAAAAGGTTAATTTTTAGAGCCACAGATAATTTTGCTGACTTAACTCAGATGCCAAAAGTAGATTTAGAGTGTAGACTTAAATGTTAATATTGAAGTTacgtttttttatatatatttctgctTTTGAATACCAAAATACATCTTTTAATCCCAAGTGAGCAtcaaaacaaattattttaagTGTTGAAATGTGGCAACAGACTTTTTTGATACTCTCAAGATGATCCCAAATACTAGATAATAAAATTGTTCttggaaaaata

Function

NR:

description
PREDICTED: protogenin B

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039808689.1 True 5507 mRNA 0.45 19 19323799 19339115

Neighbor

gene id symbol gene type direction distance location
rsl24d1 rsl24d1 coding downstream 1128 19318887 ~ 19322671 (-)
LOC120564048 LOC103363116,LOC100694407,LOC102201394 coding downstream 10136 19296993 ~ 19313663 (-)
myo5c myo5c coding downstream 27712 19285472 ~ 19296087 (-)
gnb5a gnb5,LOC103380486 coding downstream 38502 19281117 ~ 19285297 (-)
ap4e1 ap4e1 coding downstream 43601 19269748 ~ 19280198 (-)
LOC120564015 rfx7,LOC100694937 coding upstream 2495 19341610 ~ 19358244 (-)
LOC120564004 LOC103363835,LOC104931412,LOC104960084 coding upstream 58123 19397238 ~ 19415937 (-)
fan1 fan1 coding upstream 78511 19417626 ~ 19423222 (-)
duox2 duoxa2 coding upstream 95134 19434249 ~ 19436656 (-)
zgc:101540 LOC100694233,LOC102305394,LOC102779799,LOC101472508,LOC102208223 coding upstream 198387 19537502 ~ 19547183 (-)
G86337 pfcyp19b-tstr non-coding downstream 55362 19268211 ~ 19268437 (-)
G86253 NA non-coding downstream 191633 19131851 ~ 19132166 (-)
G86195 tph1 non-coding downstream 311718 19010925 ~ 19012081 (-)
G86072 NA non-coding downstream 554661 18767495 ~ 18769138 (-)
G86064 NA non-coding downstream 562723 18757052 ~ 18761076 (-)
G86394 NA non-coding upstream 29644 19368759 ~ 19369056 (-)
G86395 NA non-coding upstream 31892 19371007 ~ 19374939 (-)
G86400 LOC101161482 non-coding upstream 44504 19383619 ~ 19384007 (-)
G86430 NA non-coding upstream 186572 19525687 ~ 19527137 (-)
G86432 NA non-coding upstream 191461 19530576 ~ 19531622 (-)
arpp19b arpp19,LOC100693429,LOC102791975,LOC106919339,LOC101065895 other downstream 6321 19315385 ~ 19317478 (-)
LOC120564082 svip other downstream 163312 19156758 ~ 19160487 (-)
G86194 tph1 other downstream 312883 19007196 ~ 19010916 (-)
syt7a LOC102215913,LOC101470916,LOC102782335,LOC103466506,LOC103141308,LOC107388681,LOC100690092 other downstream 627701 18614588 ~ 18696098 (-)
tmem258 NA other downstream 820933 18499319 ~ 18502866 (-)
G86402 LOC103363837 other upstream 48707 19387822 ~ 19388575 (-)
cep152 cep152,LOC104960117 other upstream 218337 19557452 ~ 19573688 (-)
G86638 NA other upstream 913524 20252639 ~ 20259259 (-)
LOC120564033 LOC103358331,LOC102195670 other upstream 1467767 20806882 ~ 20829235 (-)
LOC120563850 NA other upstream 1538553 20877668 ~ 20887626 (-)

Expression


Co-expression Network