ap4e1 (ap4e1)


Basic Information

Item Value
gene id ap4e1
gene name ap4e1
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053119.1
NCBI id CM020916.1
chromosome length 42187026
location 19269748 ~ 19280198 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039808690.1
CAAGCCTGGTCAGTCTGCTGAATCAAAACAATGGCCGACTGACAAGCTAGTATTTTACCTATTGTGATCTTTTTTAATTAACTAACAACATTTAACAATTAACACTCTCTGGCTCCGTTTAAGAAACTCTTACTGGGATGGATAGATGATTTAATAAGTgtattttgaaagaaaaaaacagctacCAAGTTCCGCTGTTCGCTGGCAAAATGAGCGATGTTGTGGAGAAGACCCTGACAGCTCTGCCGAGCCTCCTGTCTTTAGACTCTCAGCCTGGATCTACAAAACTGTCCTCCACCTCAAAACTAGGAACCCTCATCAGAGGAATCACTGAGTTAACGTCCAAACATGAGGAGGAAAAACTTATTCAACGTGAACTAACATCTATCAAAGAACAGGTGTCCTCCCCCAACACCTCCATGAGGCAGATGAAGGAGCTCATGGTGAGAGCAATCTACTGTGAAATGCTCGGTTATGAGGCTGCGTTCAGCTATATTCATGCCATCAAACTGGCTCAACAAGGCACTGCTCTGGAAAAAAGAGTTGGTTACCTTGCTGTGTCTTTGTTTCTTAACGAAAGTCACGAGCTGCTTCTTCTCCTTGTGAACACTGTTTTAAAGgATCTTCAGAGCACAAACCTTATTGAAGTCTGCATGGCTCTAACTGTTGTCAGCCAGATATTCCCCAAAGATATGATTCCTGCGATCCTTCCTCTGGTCGAAGAGAAACTTAATCACCCAAAAGAAATCATTCGCCGAAAAGCAGTCTTGGCACTGTATAAATTCTACCTAATAGCACCGAATCAAGTTCAACACATCCACAACAAGTTTCGTAAAGCTCTGTGTGACAAGGATCCTGGTGTCATGACAGCTTCACTACACATCTACTTACAGATGATCCAGGAGAATCCAGAAGGTTATAAGGACCTGACAGCAAGTTTTGTCACCATAATGAAGCAAGTGGTGGGAGGAAAACTGCCCATGGATTTTAACTATCATAGTGTCcctgctccatggctgcaaatTCAGCTTCTCAGAATATTGTCCTTACTTGGGAAAAATGACCAGAGTACAAGTGAGATCATGTATGAGGTCCTCGACGAGTCTTTACGAAGAGCAGAGATGAATCATAACATCACCTACGCAATATTATACGAgtgtgtaaaatgtatttacacaaTTCATCCCAAATCTGAACTTTTGGAAAAAGCTGCAAAGTGCATTGGCAATTTTGTTCTGTCACCAAAGATTAATCTCAAATATCTCGGCTTGAAGGCCCTCACCTATGTGGTCCAGCAGGACCCTAAACTGGCCCTGCAGCATCAGATGACCATCATAGAGTGTCTCGATCATCCCGACCTCATCATCAAGCGTGAGACACTGGAGTTGCTCTTTCGGATCACCAACGCCCAGAATGTCACAGTCATCGTTGAGAAGATGCTGGAGTTTCTGCGAATTAATAAAGATGACTACACTACCATTGACCTGGTGGGGAAGGTGGCAGAACTGGCAGAGAAATATGCACCAGACAATGAATGGTTCATTGAGACCATGAACACAGTGTTTTCACTGGGTGGAGACATGATGCAGCCAGACATCCCAAACAGTTTCCTTAAACTGCTGTCTGAGGGATTTGACAGCGTGGAGGAAGACAGGAAGTTGAGGCTGTTTGCTGTGGATTCATATGTTTCTCTGCTGCAAGGAGAGCCTGGCAAACTGCCACAGCGCTTCCTCCAAGTCATCAGCTGGGTCCTCGGTGAATACTCCTATTTGAGGAAGGAACTTGAAGCGGCCACAGTCCTGAAGCTGCTGGCCAAACTGCTGGACATGAAGAACACCAGCAGTGAAACCAAGAGCTGGGTCCTCATGGCAATGACCAAGCTCTGTGAGGGCAGGACAGGTCTTTCTGTGGCCCAGGAGGTTTCTGAAACATATAGCAGCTCCCTGGACACAGTACTGAGACAGAGGGCTCAGGAGCTGCAGCACCTTAGCCAAGACTGGGAACTACAAGCCAGGGTGCTACCTCGAGACACCGGCCATGAACCTCTGGAGgTAGATTCCTCTCTATCATTTCTGGATGGATTCGTGTCGGAGGCGCTGGCTGCTGGCGCTGCTCCATACAAGCCTCAACATCAACGGCAGGAGGAACTAGCTCAGGCAAAAGCGTTGAGCCTGGATCCATACGGCCTGTCCCTGCCCATCAGCATGTCCTCCTGCAGCATCGCAGACAGACAGTCTCCTACACTGTTATCCATAAGCTCTGGTCTGTCAGGCGATAGCACCGAACTCTCACACAAAGGAGGCTCTACAAGTCTGAAGCTGGATGGTGTAAAGAGGGTGTGGGGCAGGGAGGGCTACCTGGCACAGAGGGAACCTGTGGAGGAGTGTGCCCATGTTGAGGTTCCCAGTCCCCTCCGTTCACCCAACCACCATGGAGAGGCTGACGGTTCACCCAGTCAGACTCCCACTCCCACTCCGACACCGACCCCCGAGCCCGAACTGGAGAAACGGCAGCTGGCCTCTTCACTGTTTGTCGGCCTGAGCTCCCAAAGCTCTCTGTGTCTGATGGGGAAATCTGAGCCGACACCCCAGCGATTTAGAAGAAAAGCAAAAGGTCCGGTCTCGTCCTCGGTTGCCAGCGAGCAAATATCCAACTCCCTCGTCTCTACTCCGAGCACAGTGGATAACTTGCTGTGTAACAACCTCCTGGACACCAACATCACCTCAGAGCTGGATGTTTCTTCACTCCAACAGACATCCCAACTCACTCATGGCCTCACTGCTGCAAATGGCCACTGTGATGTAGAGTTAACTGACAGTGACATAAAGGGAAGTAGCCCCTCTCTCATTGGGGATAACGGGCTGGTAGCTGCTGATCCGGGTTTACATGAGGACCCAGATGGACCTAAAGACTTGTGTCTCAGTTCTCATCTTCCTGCAGAGCTCTCTGGACTCTCTCACTCCGAAATCACTCCTCTGTGCTCCAAACAAAGCCTGGATCTCTCGGCCTGTCATGTGCATAAAGATGATTTCTTAGTACTAGTTGTTTTCATTTACAACTCCTCTGACTCTGACATTCAACAGATAATATTAGAGCTTGACTCAGATGAACTTGAGgtatcctgtgtgtgtgacagtcgAGTGCAGGAGGCGAGAAGCCACAGTGTAGCAGTGTGTCAGTATTTCCTGACCGTGAAGAGACCTTCAGTCCATGTTGAAGTGGTTGGGATCGTATCTTACCAGTTTCCTGTTGGGACGCCTCAGTCGGTGCAGTTCTCATACAAACTGCCTCTAACCAGCTTCATCAGACCTTTGACTCTGACCACGGAGGAATACGGGACAATGTGGCTGGACTTTTCTCACGATACAAAGCAGAACCTGACACTGATAAGTGACGGCCAAGAACCTCTCGCAGCCACTCTGAATATGCTGGAGAAGAAACTTCAACTTCATGTTGTGGAAGTCATAGGTATGGAAGGTATTGTAGCCTGCCGGCTCCTCCCGGATCAGCCGTGTCTGATGCACTGTCGTCTGCATGCAGGAACTCTGGCCGTGTGGCTGCGCTCTCCAGTCCCCGACCTGCCCGACTGCCTGATGTACCACTGTCAGAGAGCTTTACAGGAGCACTGAGACCCCATTGACACCACTAAGCAACATGAGCACCGGACCCTCAACCACTGAAGAGGAAGGTACACAGAGCAGTAGTGCAGAACATCTGGTGTTGTGCATTCTCATTTTTATATTACAGTGTTTACCATTTGTTTATCTCTTCCACTATAAGTGACAacgactttatttttttttgtccatgtaTCCTTTCTTTTTAACAGTTAAGTTGGTGGAATATTTTACAGGATTGTTTAAAGTCATGGCTGGTAATAACCTCAGGGCCAAAAGACGGTGTTTTTAACCTTCTGTGGGTGTTTGATGTTTCAGAATAACAATAATGTCTTAAAATGATGACAGGACTTCATGATGACTTTAAAACTGTAATGCTTGAAACAGCATTACAGTTAGTGAGTGAAATGAATATTGAATATGATATTCTCAGTATGAAGGGAAAATCATGAATTGACTTACTTGGTTACTTCTTGCACCCCTTGTCTGCATGCTGAATATCAATAGAGGTCATGTCCTGCTTTCTAATTTCAGCTACACTTTCTAGGCTACAAGAATCATGACAGTGAAGCCCATTTGTATTTTAATCAGACAAATACATATATTAATTTTGTTCTTTTCAAGTTTATCAATACTAATTGAAGCAATGCTGAGTGAAATGGAAATAATAACTCAAATCCTTGCATTGGATTGGTTGATGTTATTTATTAGGTGTCTTTGGGAGAAGCACAGGGAAGATATTGATATCTTTTAGGAGTACCAAACCGAACAAACCATTTCAGGAGAATTTAAACTACTCCCAGAGAGCTGCTTTTTAAGAAGAACCTGCTCGTCTTTACTGCTGAAGTTTCAACACAGAGAAAAGATCTCTACATGTTTGTCTTTAGGATTACATTATGCTGACACTAACCTCCAGCTGCAGAAGTTACACATATTTCTTACATCTATGATGAGAGTATTTTGTCTCAAATATATCAATGACAGGAAGATGTCCTTATTGTCCATTTGTCATTATAATGAGGAGCATTTCAGTTTCCCCTGGTGTTTCACAGGCGCTGCCTTCTATGCACTCATGTTTCTGTCGGTGAGAGGTGGGttttttgattattatatttttgtatcaatgcagtattaaaaacatatttattggATTTATATTCTTacagaaaatattttatattaatttctctgaaagaaagaaaatcatcGTGCTCCATGTACTGTTTGATCGCACTGTGCCAGATCTGACTTGTCTCagcctgttttatttaattcaaccTGAAGGGAAAGTTTACCTTTGTTCTTTGTTGCCTGTGTCCTGATTAGAGCACAGCGTGATGCTAACAATGTGTCTAAAACTCAGTTTTAACCCAACGCCTTATGTTCTAACGCCAAAGTGGCGTATTTGATTTGTGCCTGTGGTACAGAGAAAATCATTGTTTATTAGAGTGCCTGTCATTACATTCTGCTAACTTATGAATAAAtccaacacatgtaaatgaactTGA

Function

symbol description
ap4e1 Predicted to enable cargo adaptor activity. Predicted to be involved in receptor-mediated endocytosis. Predicted to act upstream of or within intracellular protein transport and vesicle-mediated transport. Predicted to be located in Golgi apparatus and membrane. Predicted to be part of AP-4 adaptor complex. Human ortholog(s) of this gene implicated in hereditary spastic paraplegia 51 and stuttering. Orthologous to human AP4E1 (adaptor related protein complex 4 subunit epsilon 1).

NR:

description
AP-4 complex subunit epsilon-1

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process
GO:0016192 vesicle-mediated transport biological_process
GO:0030117 membrane coat cellular_component

KEGG:

id description
K12400 AP4E1; AP-4 complex subunit epsilon-1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039808690.1 True 5125 mRNA 0.45 21 19269748 19280198

Neighbor

gene id symbol gene type direction distance location
LOC120564055 NA coding downstream 5384 19249998 ~ 19264364 (-)
clpxb clpx coding downstream 22368 19233210 ~ 19247380 (-)
LOC120564071 NA coding downstream 37036 19230226 ~ 19232712 (-)
tmem276a LOC104964516,LOC104932831,LOC103363105,LOC103156503,LOC100692521,LOC103466466 coding downstream 53443 19213383 ~ 19216305 (-)
fancf NA coding downstream 130583 19136971 ~ 19139165 (-)
gnb5a gnb5,LOC103380486 coding upstream 919 19281117 ~ 19285297 (-)
myo5c myo5c coding upstream 5274 19285472 ~ 19296087 (-)
LOC120564048 LOC103363116,LOC100694407,LOC102201394 coding upstream 16795 19296993 ~ 19313663 (-)
rsl24d1 rsl24d1 coding upstream 38689 19318887 ~ 19322671 (-)
LOC120564050 LOC104931415,LOC103363123,LOC104960120 coding upstream 43601 19323799 ~ 19339115 (-)
G86337 pfcyp19b-tstr non-coding downstream 1311 19268211 ~ 19268437 (-)
G86253 NA non-coding downstream 137582 19131851 ~ 19132166 (-)
G86195 tph1 non-coding downstream 257667 19010925 ~ 19012081 (-)
G86072 NA non-coding downstream 500610 18767495 ~ 18769138 (-)
G86064 NA non-coding downstream 508672 18757052 ~ 18761076 (-)
G86394 NA non-coding upstream 88561 19368759 ~ 19369056 (-)
G86395 NA non-coding upstream 90809 19371007 ~ 19374939 (-)
G86400 LOC101161482 non-coding upstream 103421 19383619 ~ 19384007 (-)
G86430 NA non-coding upstream 245489 19525687 ~ 19527137 (-)
G86432 NA non-coding upstream 250378 19530576 ~ 19531622 (-)
LOC120564082 svip other downstream 109261 19156758 ~ 19160487 (-)
G86194 tph1 other downstream 258832 19007196 ~ 19010916 (-)
syt7a LOC102215913,LOC101470916,LOC102782335,LOC103466506,LOC103141308,LOC107388681,LOC100690092 other downstream 573650 18614588 ~ 18696098 (-)
tmem258 NA other downstream 766882 18499319 ~ 18502866 (-)
lctlb lctl,LOC104967861,LOC107388717,LOC106956364 other downstream 1221908 18041628 ~ 18047840 (-)
arpp19b arpp19,LOC100693429,LOC102791975,LOC106919339,LOC101065895 other upstream 35187 19315385 ~ 19317478 (-)
G86402 LOC103363837 other upstream 107624 19387822 ~ 19388575 (-)
cep152 cep152,LOC104960117 other upstream 277254 19557452 ~ 19573688 (-)
G86638 NA other upstream 972441 20252639 ~ 20259259 (-)
LOC120564033 LOC103358331,LOC102195670 other upstream 1526684 20806882 ~ 20829235 (-)

Expression


Co-expression Network