LOC120564071


Basic Information

Item Value
gene id LOC120564071
gene name NA
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053119.1
NCBI id CM020916.1
chromosome length 42187026
location 19230226 ~ 19232712 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039808748.1
GGCTTAGTGATGAAGAGGCTTATCACGTATGATGATGTCTTTGTGTTAATCATTTACTCGTCAATGCTTCAGAGGGCTGTGGACCTGAGAGAGAAAACCTGACAAAGGTCGTTTGTTGGTGAAAATGAACACTCTGGAGGATGTCCCATTTCAGACCCTACTGGGCCCACTGGACGAGGAAGTGCAGCTTGTGACGGCTCCAGACATCACTATACCAGACTGCCATCGGATACTACGAGACACTGAGTATGGATTCAACCTGGAGAAATGGATCTTAACTGGGCAGCAGCCAGACTGCCAGGCCCCCTCCTGTCCCCCCTACTGGCTGATGTTCAGCAGCTCTGAGGAGAGCTGCAGGGCCAATCGCAGGACCAACGACCCGTGGGACCTGAACCCTCGACCCCGCAGTCACAGCCTGAACTCTGCAGACACTCGCCGGCTGCACCATCGCACCGTCAGGTTCCTCCTGTCTGACTCTGAGGATGACGATGGTTACCATGAGGATAATGAAGCCTCCTCCAACGAAGATGCACCTCGCTCCATcaagagcagagagcagcacCGGAGCACTGCACCCAAAGACCCAATCTCCAGAGTCAAAGACATGCACCTTGGTCCTTCCACTCACCACAGTAAGCCTGCCTCACCTCAGAGCTTTAGAGGCTCTTTACCTTCTCTCCAAGACTGCAGACAACCTCTGCGAGCACCGGAGCAGCACAGGTCACAGCAGGCCAGCCCCTTGCCCCACGGGCAGAAGAACAGCAAAAAGAGGCAGCGTTCACTGGGCTCTGTGGGCAGAAGGTACTCCCAGGACACACCACCTGCTCACTCTTCACCCAGGCTGCAGCAACaacgaccctcctctgcagGGCCTGTTGTCAGAAACCACAGACAGAAGACCCTGAGGACTGGTGGCTCTCGTGGAGTTTTCTTTGACTCGGCAGCAGAGTTGGTGTCAGCACTCAGCCAGGAAGAGAGGGAGCTACTTGAAACCATCACAGAGAAGGGCTACCCTTTACGCACAGCTTTTCTGGCTCTGCAGAAGACAGGCTATCACAGCCCGGAGAAGATCCTAAAATACCTGGTAGCCAACGGCCGTCTGTGTGAGCTGGGTTATGATGAAGCACAGGTGGAGGAGGCCTTGGAGATGTTTCAAAACTGTGAGAGCAAGGCTGCTGAGTTCCTGCGCCTTCTGACTCAGTTTAATGAGATGGGGTTCCAGCAAAGTGCAATCAAAGAAGTGCTGCTTGTTCATGAAAATAACCGTGAGAGGGCTCTCGAAGAACTCATGACACGCATGTCTTCAACATAACATCCATTGCTAGTCTGCATGGAGAAAAGATCATTTTCTACAATATGTGAAATGTCCTAAAGATATTGTGTGCTCAAATGTAATACTTAACAGATACTGCTTTAGGCTCAGAGTTAACATAAAACCTGTGCAACTCAACCATAGGGGCTAGAATGAAAACATGCATGTATTGTACAATTAGAAATGACAAGataataaataattacaatTAGTAGCGA

Function

GO: NA

KEGG:

id description
ko04744 Phototransduction

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039808748.1 True 1530 mRNA 0.51 6 19230226 19232712

Neighbor

gene id symbol gene type direction distance location
tmem276a LOC104964516,LOC104932831,LOC103363105,LOC103156503,LOC100692521,LOC103466466 coding downstream 13921 19213383 ~ 19216305 (-)
fancf NA coding downstream 91061 19136971 ~ 19139165 (-)
LOC120564059 ano9 coding downstream 136846 19082128 ~ 19093380 (-)
sigirr LOC107101974 coding downstream 149341 19069872 ~ 19080885 (-)
kcnc1b kcnc1 coding downstream 193063 19023692 ~ 19037163 (-)
clpxb clpx coding upstream 498 19233210 ~ 19247380 (-)
LOC120564055 NA coding upstream 17286 19249998 ~ 19264364 (-)
ap4e1 ap4e1 coding upstream 37036 19269748 ~ 19280198 (-)
gnb5a gnb5,LOC103380486 coding upstream 48405 19281117 ~ 19285297 (-)
myo5c myo5c coding upstream 52760 19285472 ~ 19296087 (-)
G86253 NA non-coding downstream 98060 19131851 ~ 19132166 (-)
G86195 tph1 non-coding downstream 218145 19010925 ~ 19012081 (-)
G86072 NA non-coding downstream 461088 18767495 ~ 18769138 (-)
G86064 NA non-coding downstream 469150 18757052 ~ 18761076 (-)
LOC120564122 NA non-coding downstream 552241 18675263 ~ 18677985 (-)
G86337 pfcyp19b-tstr non-coding upstream 35499 19268211 ~ 19268437 (-)
G86394 NA non-coding upstream 136047 19368759 ~ 19369056 (-)
G86395 NA non-coding upstream 138295 19371007 ~ 19374939 (-)
G86400 LOC101161482 non-coding upstream 150907 19383619 ~ 19384007 (-)
G86430 NA non-coding upstream 292975 19525687 ~ 19527137 (-)
LOC120564082 svip other downstream 69739 19156758 ~ 19160487 (-)
G86194 tph1 other downstream 219310 19007196 ~ 19010916 (-)
syt7a LOC102215913,LOC101470916,LOC102782335,LOC103466506,LOC103141308,LOC107388681,LOC100690092 other downstream 534128 18614588 ~ 18696098 (-)
tmem258 NA other downstream 727360 18499319 ~ 18502866 (-)
lctlb lctl,LOC104967861,LOC107388717,LOC106956364 other downstream 1182386 18041628 ~ 18047840 (-)
arpp19b arpp19,LOC100693429,LOC102791975,LOC106919339,LOC101065895 other upstream 82673 19315385 ~ 19317478 (-)
G86402 LOC103363837 other upstream 155110 19387822 ~ 19388575 (-)
cep152 cep152,LOC104960117 other upstream 324740 19557452 ~ 19573688 (-)
G86638 NA other upstream 1019927 20252639 ~ 20259259 (-)
LOC120564033 LOC103358331,LOC102195670 other upstream 1574170 20806882 ~ 20829235 (-)

Expression


Co-expression Network