ube2na (ube2n)


Basic Information

Item Value
gene id ube2na
gene name ube2n
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053119.1
NCBI id CM020916.1
chromosome length 42187026
location 12730355 ~ 12736681 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039808783.1
TGTCCAGCCATTGCTATGACGCAGAGAACCCGGAAGACGTGTGTTTGCTGTCAATGCCAACGACAGAGAGGAGGCGCAGCTGAAACCCCGCATTTAAGACAAGATGGCAGGACTGCCCCGTAGGATCCTTAAGGAAACTCAACGTTTGATTGCAGAGCCTGTCCCAGGCATCGAGGCAGAGCCAGACGAAGGCAACGCCCGCTACTTTCATGTGATCATTTGTGGACCTCAGGACTCACCTTTTGAGGGGGGCACGTTTAAACTCGAGCTCTTTTTACCAGAGGAATATCCCATGGCTGCTCCGAAAGTGCGCTTCATGACCAAAATATATCATCCCAATGTAGACAAGTTGGGGAGAATATGTCTAGACATTTTGAAAGATAAATGGTCACCAGCCCTGCAGATTCGCACAGTGCTGCTGTCAATCCAGGCGTTACTAAGTGCACCCAACCCTGATGATCCCCTTGCAAATGACGTTGCAGAGAAGTGGAAGTCCAATGAAGTTGAAGCCATAGAAACAGCCAGGTCATGGACCAGGCTTTATGCTGGAAGCAGAAATGAAGTGTGAAGCAGCTCAACAAGTGGAAATCAAGTGCGATTCCTTATGCTCTGCCAAGACATCTTCCTacttcatttacatttaaaggaCACCAtcttgaaaatatatatatatatatatatatattatattataaaataaacatgaatatataatggtaaaggaaaaaaaacaactgctgACAATTGGTGATTTAAATGCGCACTAGTAATGAAATGACTCGTCTTGTCCTTACTCACTGTTGAAATGCATGGGCAGAGGTTTTAGATCTACTCACCTGGCTTTCTTTGTCCATTGATTTTGGGAAGCTTTTCCCAACTGCTGCTTTAAACGAGCACATTTAAGGGGGAGGTGGGCGTGTCCTACGTCCCACATTTTT

Function

symbol description
ube2n Enables ubiquitin binding activity; ubiquitin protein ligase binding activity; and ubiquitin-protein transferase activity. Involved in several processes, including DNA repair; protein ubiquitination; and regulation of protein modification process. Located in cytoplasm; fibrillar center; and nucleoplasm. Part of UBC13-MMS2 complex; UBC13-UEV1A complex; and ubiquitin ligase complex.

NR:

description
ubiquitin-conjugating enzyme E2 N-like

GO:

id name namespace
GO:0006301 postreplication repair biological_process
GO:0045739 positive regulation of DNA repair biological_process
GO:0051443 positive regulation of ubiquitin-protein transferase activity biological_process
GO:0033182 regulation of histone ubiquitination biological_process
GO:0042769 DNA damage response, detection of DNA damage biological_process
GO:0031058 positive regulation of histone modification biological_process
GO:0043123 positive regulation of I-kappaB kinase/NF-kappaB signaling biological_process
GO:0000209 protein polyubiquitination biological_process
GO:0000724 double-strand break repair via homologous recombination biological_process
GO:0000729 DNA double-strand break processing biological_process
GO:0051092 positive regulation of NF-kappaB transcription factor activity biological_process
GO:0050852 T cell receptor signaling pathway biological_process
GO:0031372 UBC13-MMS2 complex cellular_component
GO:0005634 nucleus cellular_component
GO:0004842 ubiquitin-protein transferase activity molecular_function
GO:0043130 ubiquitin binding molecular_function

KEGG:

id description
K10580 UBE2N, BLU, UBC13; ubiquitin-conjugating enzyme E2 N

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039808783.1 True 938 mRNA 0.44 4 12730355 12736681

Neighbor

gene id symbol gene type direction distance location
nudt4a nudt4,LOC100689726,LOC101064765,LOC102791978 coding downstream 3012 12712453 ~ 12727343 (-)
eea1 eea1 coding downstream 18003 12689693 ~ 12712352 (-)
itpr2 itpr2 coding downstream 70187 12600381 ~ 12660168 (-)
bhlhe41 bhlhe41,LOC102793158 coding downstream 142864 12585311 ~ 12587491 (-)
kras kras,LOC105900436,LOC103038241,LOC107595236 coding downstream 166984 12553483 ~ 12563371 (-)
nr1h4 nr1h4 coding upstream 5461 12742142 ~ 12758791 (-)
slc17a8 slc17a8 coding upstream 23951 12760632 ~ 12774255 (-)
si:dkey-103i16.6 LOC103374744,LOC101471570 coding upstream 177957 12914638 ~ 12931212 (-)
LOC120564143 NA coding upstream 204315 12940996 ~ 12944236 (-)
LOC120564144 LOC103374492 coding upstream 229283 12965964 ~ 12974409 (-)
G84243 NA non-coding downstream 41720 12687483 ~ 12688635 (-)
G84244 NA non-coding downstream 43068 12687034 ~ 12687287 (-)
G84236 NA non-coding downstream 117079 12580603 ~ 12613276 (-)
G84130 NA non-coding downstream 524824 12205241 ~ 12205531 (-)
G84129 LOC104959604 non-coding downstream 529520 12177943 ~ 12200835 (-)
G84294 NA non-coding upstream 93675 12830356 ~ 12834571 (-)
G84320 rfx4 non-coding upstream 148982 12885663 ~ 12885917 (-)
G84321 NA non-coding upstream 149910 12886591 ~ 12886903 (-)
G84324 NA non-coding upstream 155345 12892026 ~ 12893439 (-)
G84326 rfx4 non-coding upstream 160378 12897059 ~ 12898557 (-)
G84123 cat,LOC102293651,LOC102204975,LOC102775586,LOC102293936 other downstream 585809 12141523 ~ 12144546 (-)
G84083 NA other downstream 841957 11888027 ~ 11888398 (-)
ptpn9a ptpn9 other downstream 1469394 11173553 ~ 11260961 (-)
oaz2a oaz2,LOC104929548,LOC101470759,LOC102200097,LOC106531198 other downstream 1817138 10823286 ~ 10913217 (-)
LOC120564603 NA other downstream 2015510 10706219 ~ 10714845 (-)
G84530 LOC100696427,LOC106963151,LOC107104182,LOC107388919,LOC104956556,LOC102796452,LOC102202152 other upstream 493936 13230617 ~ 13231095 (-)
prr5a prr5,LOC103371545 other upstream 510147 13246828 ~ 13256093 (-)
LOC120564547 fbxl14,LOC103380143,LOC107388938 other upstream 589292 13325973 ~ 13385205 (-)
mafb maf,LOC104941368,LOC104940469,LOC101071510,LOC101484138,LOC103380135,LOC102219741,LOC106520304 other upstream 837150 13573831 ~ 13618786 (-)
zgc:77752 NA other upstream 1294423 14031104 ~ 14037716 (-)

Expression


Co-expression Network