sema3ab (sema3a)


Basic Information

Item Value
gene id sema3ab
gene name sema3a
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053119.1
NCBI id CM020916.1
chromosome length 42187026
location 14683447 ~ 14708118 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039808785.1
TTGCACTGTGTGCCTTGTGCTGTGGGGACAGGGCAGAGCTGCGCTGAGTGGGGCTGAACTAGTCCAGAGCAGAGTTAAGTAGAGTGAGAGGTAGATAGAAAAACAGagtgaaaggaagagagagagagagaggagagagagagagagagagagagagagagagagagagtgtgtgtcagtgcAGATTGTGCTTACCAAGCAGACTGGATTAACAGCTGAAACAAACTGGACcagtttttctctctttcactaAAGGTAGAGACTCAGTGACAAGGTGGATGGCTGTTAAGACAGAGCTGCATGCTGGTTAGGTACCAGGACAGAAAACTATGGCAGTGTTACCAAGACCCTCTCACTCTTCCTCGCATTGAGTATGGTGAAGATCTCTTCTTTGTGCTTAGTTTGGTCAAGTTTACCTTGGACTTGCTGGTGTTGGAGGCTCACATGCAGTGACATTGACCCGTAACCCCCAACTCTGCTTCGCAGGTTCTGTCTCCCCTGGAGTTGGACTCTAATTTTGGCTTTTGACCCCTGGAACAGAAAAGGATTTTTCATTTGGCAGGGGACGAGACCTGCTGAGAACCAGTCTGGACTGGCCCACCAGCATTTATTCATAATCGCTGGAACAGGAACATTTATTCTACTACACAATATTAGAGATTGACTGCACTGGAGGCGTGTATTTAAAGGACCTCTCTGGCCTCTATTGCCCCAGGACCATGGGCTCTCTCTGGGGCAGCATTATGCTGCTGTGTGGGGTGGTTCTGCTCAGGACGGAGGGCAGCAGAGCCCAACAGACCAAGAACAACGTCCCCCGGCTAAAACTCTCTTATAAAGACATGCTGGAGTCTAACAACCTTGTGACGTTTGAAGGCCTGGCCAACAGTTCGGCTTACCACACCTTCCTGTTGGACGAGGAGAAAGGAAGACTTATAGTGGGAGCCAAGGACCACATCTTCTCTTTTAACCTCCTCAATATCAGCAGAGACTACACACAGatcCCTTGGCAGGCTTCTCCCACCAGAAGAGATGAATGCAAGTGGGCAGGAAAAGATCTTTCGAGGGAGTGCTCAAATTTCATCAAGGTGTTGCAGCCGTTCAACCAGACCCATCTCTATGTGTGTGGGACGGGAGCCTTCCACCCTGTGTGCTCCTACCTGGAGGTGGGCAAGAAAACAGAGGACAGTGTGTTCCGACTGGAGCCTCTCATAGAAAATGGCCGAGGGAAGAGTCCCTATGACCCCAAGTTGCTCACTGCCTCCATGTTAATTGATGGAGAACTGTATGCTGGGACATCAGCTGACTTCATGGGGCGGGACTTTGCCATCTTTCGCACTCTTGGAAAGCATCACCCAATCAGGACGGAGCAACATGATTCTCGGTGGCTAAATgATCCCAGGTTTGTTGGCGTTCATCTAATTCCAGAGAGTGACAACCCAGAAGATGACAAAATCTACTTGCTCTTCAAAGAGAACGCTTTAGATGGCGAGCACGCCGGGAAGGCTACACATGCTCGCATCGGACAGCTCTGCAaaAATGACCTGGGAGGCCACAGGAGTCTGGTAAATAAGTGGACCACCTTCTTGAAGGCTCGACTTATTTGCTCCGTGCCTGGCAGTAATGGAATAGACACACACTTTGATGAACTACAGGATGTTTTTCTCATGAGCACGAAGGATCCTAAGAGTCCGATCATCTATGCAGTATTTACCACTTCCAGCAACATCTTCAAAGGTTcagctgtgtgtatgtacagCATGACAGACATCAGGAGAGTGTTCCTGGGTCCTTATGCTCATAGAGATGGACCCAACTATCAGTGGGTGCCCTTCCAGGGACGTGTTCCCTACCCCCGTCCCGGCACGTGCCCGAGCAAAACATTTGGCGGATTTGATACAACCAAGGACCTTCCTGATGAAGTCGTAACCTTTGCCAGAAGCCACCCAGCCATGTTTAACCCTGTCTATCCCATTAACAATCGACCAATCATAGTCAAAACAGATGTGGACTACCAGTTCACCCAGATAGTGGTGGACAAAGTAGAAGCAGAAGATGGCCAGTATGACGTCATGTTCATAGGCACAGACATGGGGACTATACTGAAAGTGGTATCCATCCCCAGAGGCTCCTGGCACGACCTGGAGGAAGTCCTATTGGAAGAAATGACTGTCTTCAGAGAGCCAACAGCCATTACAGCAATGGAACTGTCAACAAAACAGCAACAACTGTACCTGGGCTCAGACATTGGTGTGTCCCAGATGCCTTTGCATCGGTGTGAGGTTTATGGGAAAGCTTGTGCTGAATGTTGCCTGGCAAGGGACCCTTACTGTGCATGGGATGGCACCGAGTGCTCCAGATACTTTCCCATGGCTAAGAGGAGAACAAGGAGGCAAGATATCAGGAATGGAGACCCACTCACACAATGCTCAGATCTGCAACACCATGATGAACTAAGTGGGCAGACGACTCTCGTGGATAAAACTGTGTATGGTGtggagaacagcagcacttTCCTTGAGTGCAGTCCCAAGTCCCAGAGAGCTCTGACATATTGGCAGTATCAACGCTCTACTGATGACCGCAAGCAAGAGATCAAATCAGAAGAACGTTTCATCCGCACAGACCAGGGCCTACTGATTCGCACACTTAACAAGAAGGATTCTGGGATGTATCTGTGCCAGGCGGTGGAGCACGGTTTCATGCAGACGCTTCTGAAAGTGACCTTAGAGGTCATTGACAGCGAGCGCCTGGAGGACCTGCTACATCGCGATGAAGAGGCCGCAGTCAGCGTCCCCGCCCAGGACCTGTCCCCACCTCAAGAAACTCCCAATCAGAAGCTGTGGTACAGAGACTTCCTGTCTTTGGTCAATCACCCGACTCTCAACAGCGTGGACGAGTTCTGTGAGCAGGtatggaaaagggagagaaagcaCAGGAGGCAGAAAGCTCACCTGGTGCAGCAAGTACAAatacaccagcagcagcagcagcagcagcagaaggttGTGAACCCTCGCACCCACATGCATGCTCAAGGGCTGGCAGCCAAGTGGAAGCACCTGCAAGAGAGGCAGAAGGGACGCAACCGCAGGACCCATGAACTAGAGAGGGCTCCCCGCAGTGTCTGACTTATAAACCTTGACTTTTAACACCCAAACCTGCAACCACACCCTCATTCTGTAACCCCGATTAACCTACCCACTTTTCTCCTTCATACTGAGAAACAGACATCTTCCACAAAGACTGGATAGAAAAGTTAAACTGGAAATAAATGTAATACTAGCCTGATCTGCCGGCTGGTGTGTTCTGTGCGTGGGCAGCCATGTTTACAGTACGACAGTACAGAGGACTGCAGAAACGGGATGTTGTATCACGCCAGACCATTCAAGCATATTATCTCAGCTGGCCTATGTGGCCTGAACACTGCAGAAGGACAGTGTCAACCGGCACAAGAACTGGATACATTTACCCATCCTTACAGATATCACTGACTCCACGTTGAGATGGCAATGGCATTGTCTCATGGCATGCTAGTTAGGTGTCTTTATCAGTGTGAAACCACGTAGatgatcatttctttttttacttcacaaatATGAAAGAAGAGGTGtgattgtattaaaaaaaaagtctggagAGTAAATGGACATGCAGTGCAGTTATAAGCACAAAATAAGTGAAGCTCATGGAAAGCACAAATGGGATGTTTGGTCATTTTTGGTATTATAGATGGATAAATCAGTCaacacaagaaagaaaaaatgccCAAGCACTGCAAGAAACTGGGAGCAACGGTCACCATTTGTCAAGAAATACAACTATGTAGCTAAGATGTGTAAATACTGTATTCATATAACGTAAATATGACGTCTCCTCATACTAAAGGGAATGGCTTGCAGTtgtatttatcatttatttaagAAAAAGTCTTTGGAAAATAGTTGTATACAGGGAGATTTTGTACTAGCCTGTGTGTCTACGCCATAAGCTTCCCAAACAAAGTCAGGTTTTATTATTCCGATttgttcatctttttttttttttatcataagaTTCCTTCCAGTGTCAACAGTCATTGACTGCCACTTTATACAGTCGGGATGTCTGCCAACTACATCATCTCAGTGCATGAAATGTCACACTGAGTTCTCTTCCCTGTTCATTTGATTTGTATACACTTGTGTATTTATTGATATACAATTATGTACATTGTGAAAATATGCGATGTGcaggcttttttttctccttggtTTAATTAATCTGACAGGACCAATCTCTTAAAATAACTGTATTATCACAAATACTGTAGTAAGACTGGATGCTATTTATCAATATTGGTCAATATTACATGCATTACATATCAAATGCACTGAGCAATAACCCAGTATCcttactgtatttttttctgcCACATTCATTGCCTCATGTTCATATTCTTCACAGGCAGCGCAGTGTAACAACCTCATTTCACTGCATGTGACATAACAAACTCTACTTTTTCTGATTATAACAATCCTTTGTtattaaatgcacacacaaaaccacaaaccTGGAATGTAGCTGTGAACAttatgtaaatataaataatgtggTCTATGTTTGACAAGTATGACACTGTGTACTAGTGCATGTGAATACGATAGTGTTCCTGTTTTGCTATAGCAATGATATACTAGTCTGGTGTTGTCACCGTTATTCTGTTGTTTGGTATGCAGTACACAATATTAACTATTTCAAAGATGTACATACTATTTCTGTTAGGACTCTAAACTGTATAATTGATCATTCCTGAGGTAGGTATtcataaagaaaatataaacaaGATCTGAACATGATCTCACTGTGGATTTAAAGGTCCACAGACCTGTACTAACATTGAACAATGTCAGTTGAGCATTGCAACACATCAGTATGTCAGATGACCTTGTGTAGTGAGTGTTTGCAAACCTCATCTGCTTTTGGAAGCCATGATGGGGGAAGATGACAAACAGCTGGAGTCGCCCCTTGGGAAGCGATTTAAGGCTAACAAGACAAGTTCAACACCAGAGTTGTGGAACTTTCAGTAGAAATGGGCAAATGATAAAAACATTATTACAAAGAGAAAATATAGAGTGACTCGCTGCATCTGTCTTGGATATACAGTGAAAGTGAGGAAAtgaagtgctgctgctgctgctgctgctgctttttggcatgatgatgatgatggtggtgatgtATTCTACTGATCTAATAAATGTCTCTTCATGAAG

Function

symbol description
sema3a Predicted to enable chemorepellent activity; neuropilin binding activity; and semaphorin receptor binding activity. Involved in negative regulation of neuron projection development; olfactory bulb development; and regulation of axon extension involved in axon guidance. Predicted to be located in extracellular region. Predicted to be active in axon and extracellular space. Predicted to be integral component of plasma membrane. Implicated in hypogonadotropic hypogonadism 16 with or without anosmia.

NR:

description
PREDICTED: semaphorin-3A

GO:

id name namespace
GO:0007275 multicellular organism development biological_process
GO:0016020 membrane cellular_component

KEGG:

id description
K06840 SEMA3; semaphorin 3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039808785.1 True 5252 mRNA 0.45 17 14683447 14708118

Neighbor

gene id symbol gene type direction distance location
sema3e sema3e coding downstream 15947 14642838 ~ 14667500 (-)
LOC120563776 NA coding downstream 51144 14617291 ~ 14632303 (-)
LOC120563540 NA coding downstream 66089 14572731 ~ 14617358 (-)
LOC120564472 hgf,LOC102789882 coding downstream 202661 14463359 ~ 14480786 (-)
LOC120564497 NA coding downstream 407370 14273629 ~ 14276077 (-)
sema3d sema3d coding upstream 49861 14757979 ~ 14795130 (-)
elapor2a kiaa1324l,LOC104944050 coding upstream 195055 14903173 ~ 14919276 (-)
LOC120563915 LOC103375945,LOC104957331,LOC101467291,LOC102310371 coding upstream 265163 14973281 ~ 14990514 (-)
LOC120563916 NA coding upstream 296183 15004301 ~ 15012816 (-)
dnaja2b dnaja2,LOC103370603,LOC100703595,LOC101465466 coding upstream 343732 15051850 ~ 15057130 (-)
G84960 NA non-coding downstream 116178 14558458 ~ 14567269 (-)
G84776 NA non-coding downstream 318049 14365192 ~ 14365398 (-)
LOC120564348 NA non-coding downstream 398485 14283896 ~ 14284962 (-)
G84762 NA non-coding downstream 418461 14264725 ~ 14264986 (-)
G84761 NA non-coding downstream 419706 14263416 ~ 14263741 (-)
LOC120564774 NA non-coding upstream 99293 14807411 ~ 14808068 (-)
G84971 NA non-coding upstream 143602 14851720 ~ 14852023 (-)
G84948 NA non-coding upstream 246010 14954128 ~ 14955407 (-)
G85007 NA non-coding upstream 349607 15057725 ~ 15057929 (-)
G85011 ppp6r2 non-coding upstream 354493 15062611 ~ 15063137 (-)
LOC120563775 cacna2d1,LOC104952157 other downstream 125219 14501896 ~ 14558228 (-)
LOC120564470 NA other downstream 446495 14223197 ~ 14236952 (-)
zgc:77752 NA other downstream 645731 14031104 ~ 14037716 (-)
mafb maf,LOC104941368,LOC104940469,LOC101071510,LOC101484138,LOC103380135,LOC102219741,LOC106520304 other downstream 1064661 13573831 ~ 13618786 (-)
LOC120564547 fbxl14,LOC103380143,LOC107388938 other downstream 1298242 13325973 ~ 13385205 (-)
si:ch1073-390k14.1 LOC103375950 other upstream 253742 14961860 ~ 14967783 (-)
G85014 ppp6r2,LOC103370604 other upstream 357921 15066039 ~ 15073350 (-)
ttc23 LOC104957250 other upstream 764816 15472934 ~ 15484145 (-)
G85133 mef2a,mef2aa,LOC107553916 other upstream 806660 15514778 ~ 15544082 (-)
chd2 chd2 other upstream 1447866 16155984 ~ 16187336 (-)

Expression


Co-expression Network