LOC120564117 (fads2)


Basic Information

Item Value
gene id LOC120564117
gene name fads2
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053119.1
NCBI id CM020916.1
chromosome length 42187026
location 18583257 ~ 18592810 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039808831.1
TATTGCACATCAGCCAGCGGTCCAGGATATACTGTACACCGATTGGCCCAGAAACCCTCGAATGATCGGCTCGGAATTTGTACTGAATGAGTGGGTGAATGAGTCCGTGAACATTTTAGGCAAGACAAAAGGATGATTTTTTGGGATGATTACTATTTAAAATGGGTCTAAACGGAACGAGAGCAAATAAAGTGAGCCGGCGTGTTAATGTGACTGAAACCCGGGGAGAGTAGCCAAAATCTGGATACTGTGTCAAAGTTTGTAGCTGACTGGCCCTTTAGTGTGCAGGTGGACCCAGGCCAGAGACAGCAGTGAGGATGGGAGGTGGAGGCCAGCTAACGGAGCCAGAAGAGCCGATCAGCGGGCGAGCTGCTGGTGTCTACACCTGGGAGGAGGTGCAAAGCCACTGCAACCGGAATGACCAGTGGCTGGTGATAGATCGAAAGGTTTACAACATCACACAGTGGGCCAAAAGACACCCAGGAGGGATTCGAGTCATCAGCCACTATGCTGGAGAGGATGCCACGGAGGCATTCACTGCTTTTCATCCAGATTTAAAGTTTGTGCAAAAGTTTCTGAAGCCGCTGCAGATTGGAGAGCTGGCAGCGACAGAGCCCAGCCAGGACCGAAACAAAAATGCAACCATCATACAGGATTTCCATACTTTACGTGCTCAGGTGGAGAGCGAGGGTCTGTTTCGAGCTCGGCCTTTGTTCTTCTGCCTCCACCTGGGTCACATCCTTCTGCTGGAGGCCCTCGCCTGGCTGATCATCTGGGTCTGGGGAACTAGCTGGACTCTGACCTTTCTGAGCGCCGTCATATTAGCAACCACTCAGTTGCAGGCTGGATGGCTGCAGCATGACTTTGGCCACCTGTCTGTCTTCAAGAAGTCCAGCTGGAATCACTTGTTGCACAAGTTTGTCATTGGTCATTTGAAGGGAGCGTCTGCCAACTGGTGGAATCACCGGCATTTCCAGCATCACGCTAAACCCAACATCTTCAGTAAGGACCCTGATGTCAACATGTTGCACGTCTTTGTAGTTGGAGAAACTCAACCAGTGGAGTATGGCATAAAAAAGATCAAATATATGCCTTATCACCACCAACACAAGTACTTCTTTCTCGTTGGCCCACCGCTTCTCATTCCAGTTTACTTCCACATTCAAATAATACACACCATGATTTCCCGCCGCGACTGGGTGGATCTGGCTTGGTCTTTGTCTTACTACCTGCGCTACCTGTGCTGTTCTATACCCATGTTTGGCCTGTTTGGCTCAGTGGTGTTTATCAGCTTCATCAGGTTTTTGGAGAGTCACGGGTTTGTGTGGGTGACTCAGATGAGTCATCTGCCCATGGACATCGACCACGAGAAGAACCAGGACTGGCTGTCCATGCAGTTACAAGCCACCTGTAACATAAAGCAGTCCCTCTTCAACGACTGGTTCAGCGGACACCTCAACTTTCAAATCGAACACCATTTGTTTCCAACAATGCCGCGCCACAACTACCACCTGGTGGCCCCGCTGGTCCGCGCACTGTGTGAGAAACATGGGATTCCTTACCAGGTGAAAACATTGTGGCAGGGCTTCGCTGATGTTTTCAGgtCACTGAAACACTCAGGCGACCTCTGGCTTGATGCATATCTGCATAAATGACAACTTTTATTCTTTGCACAGTACCTACAAGGACTGATGTGTTTTCCTCTCATCTGCATTATACATTGATTGTATCTGTTTGGTTTTATAATCCAGTTAATAGTGTGGGATTTATCTTTTCCTAGTGTTGGTGTTATAGTTCAGTTTTTTCAGATTCTGTGCCAGATTTTTAGTGCTCACAGGATTTCTCTGATTTGCCTTACGGTGTCTTGAACAACAGTAGTATGGCGTTATATATACAATTGTGAAAAGTGATTGTCAGATATTTAAAGTGATGTTTTTTCATTATCAATCATGTGATACAGTTTGAACAATAAAATATGACAATTACGTGGACAAGTGACAAATCCAGTGTAATTGAGGATTATTTAAAGTTACTGtacttaatttacaataaaatctGCAGTTACCAA
>XM_039808832.1
CTATTGCACATCAGCCAGCGGTCCAGGATATACTGTACACCGATTGGCCCAGAAACCCTCGAATGATCGGCTCGGAATTTGTACTGAATGAGTGGGTGAATGAGTCCGTGAACATTTTAGGCAAGACAAAAGGATGATTTTTTGGGATGATTACTATTTAAAATGGGTCTAAACGGAACGAGAGCAAATAAAGTGAGCCGGCGTGTTAATGTGACTGAAACCCGGGGAGAGTAGCCAAAATCTGGATACTTGTGCAGGTGGACCCAGGCCAGAGACAGCAGTGAGGATGGGAGGTGGAGGCCAGCTAACGGAGCCAGAAGAGCCGATCAGCGGGCGAGCTGCTGGTGTCTACACCTGGGAGGAGGTGCAAAGCCACTGCAACCGGAATGACCAGTGGCTGGTGATAGATCGAAAGGTTTACAACATCACACAGTGGGCCAAAAGACACCCAGGAGGGATTCGAGTCATCAGCCACTATGCTGGAGAGGATGCCACGGAGGCATTCACTGCTTTTCATCCAGATTTAAAGTTTGTGCAAAAGTTTCTGAAGCCGCTGCAGATTGGAGAGCTGGCAGCGACAGAGCCCAGCCAGGACCGAAACAAAAATGCAACCATCATACAGGATTTCCATACTTTACGTGCTCAGGTGGAGAGCGAGGGTCTGTTTCGAGCTCGGCCTTTGTTCTTCTGCCTCCACCTGGGTCACATCCTTCTGCTGGAGGCCCTCGCCTGGCTGATCATCTGGGTCTGGGGAACTAGCTGGACTCTGACCTTTCTGAGCGCCGTCATATTAGCAACCACTCAGTTGCAGGCTGGATGGCTGCAGCATGACTTTGGCCACCTGTCTGTCTTCAAGAAGTCCAGCTGGAATCACTTGTTGCACAAGTTTGTCATTGGTCATTTGAAGGGAGCGTCTGCCAACTGGTGGAATCACCGGCATTTCCAGCATCACGCTAAACCCAACATCTTCAGTAAGGACCCTGATGTCAACATGTTGCACGTCTTTGTAGTTGGAGAAACTCAACCAGTGGAGTATGGCATAAAAAAGATCAAATATATGCCTTATCACCACCAACACAAGTACTTCTTTCTCGTTGGCCCACCGCTTCTCATTCCAGTTTACTTCCACATTCAAATAATACACACCATGATTTCCCGCCGCGACTGGGTGGATCTGGCTTGGTCTTTGTCTTACTACCTGCGCTACCTGTGCTGTTCTATACCCATGTTTGGCCTGTTTGGCTCAGTGGTGTTTATCAGCTTCATCAGGTTTTTGGAGAGTCACGGGTTTGTGTGGGTGACTCAGATGAGTCATCTGCCCATGGACATCGACCACGAGAAGAACCAGGACTGGCTGTCCATGCAGTTACAAGCCACCTGTAACATAAAGCAGTCCCTCTTCAACGACTGGTTCAGCGGACACCTCAACTTTCAAATCGAACACCATTTGTTTCCAACAATGCCGCGCCACAACTACCACCTGGTGGCCCCGCTGGTCCGCGCACTGTGTGAGAAACATGGGATTCCTTACCAGGTGAAAACATTGTGGCAGGGCTTCGCTGATGTTTTCAGgtCACTGAAACACTCAGGCGACCTCTGGCTTGATGCATATCTGCATAAATGACAACTTTTATTCTTTGCACAGTACCTACAAGGACTGATGTGTTTTCCTCTCATCTGCATTATACATTGATTGTATCTGTTTGGTTTTATAATCCAGTTAATAGTGTGGGATTTATCTTTTCCTAGTGTTGGTGTTATAGTTCAGTTTTTTCAGATTCTGTGCCAGATTTTTAGTGCTCACAGGATTTCTCTGATTTGCCTTACGGTGTCTTGAACAACAGTAGTATGGCGTTATATATACAATTGTGAAAAGTGATTGTCAGATATTTAAAGTGATGTTTTTTCATTATCAATCATGTGATACAGTTTGAACAATAAAATATGACAATTACGTGGACAAGTGACAAATCCAGTGTAATTGAGGATTATTTAAAGTTACTGtacttaatttacaataaaatctGCAGTTACCAA
>XM_039808833.1
CTATTGCACATCAGCCAGCGGTCCAGGATATACTGTACACCGATTGGCCCAGAAACCCTCGAATGATCGGCTCGGAATTTGTACTGAATGAGTGGGTGAATGAGTCCGTGAACATTTTAGGCAAGACAAAAGGATGATTTTTTGGGATGATTACTATTTAAAATGGGTCTAAACGGAACGAGAGCAAATAAAGTGAGCCGGCGTGTTAATGTGACTGAAACCCGGGGAGAGTAGCCAAAATCTGGATACTAGACAGCAGTGAGGATGGGAGGTGGAGGCCAGCTAACGGAGCCAGAAGAGCCGATCAGCGGGCGAGCTGCTGGTGTCTACACCTGGGAGGAGGTGCAAAGCCACTGCAACCGGAATGACCAGTGGCTGGTGATAGATCGAAAGGTTTACAACATCACACAGTGGGCCAAAAGACACCCAGGAGGGATTCGAGTCATCAGCCACTATGCTGGAGAGGATGCCACGGAGGCATTCACTGCTTTTCATCCAGATTTAAAGTTTGTGCAAAAGTTTCTGAAGCCGCTGCAGATTGGAGAGCTGGCAGCGACAGAGCCCAGCCAGGACCGAAACAAAAATGCAACCATCATACAGGATTTCCATACTTTACGTGCTCAGGTGGAGAGCGAGGGTCTGTTTCGAGCTCGGCCTTTGTTCTTCTGCCTCCACCTGGGTCACATCCTTCTGCTGGAGGCCCTCGCCTGGCTGATCATCTGGGTCTGGGGAACTAGCTGGACTCTGACCTTTCTGAGCGCCGTCATATTAGCAACCACTCAGTTGCAGGCTGGATGGCTGCAGCATGACTTTGGCCACCTGTCTGTCTTCAAGAAGTCCAGCTGGAATCACTTGTTGCACAAGTTTGTCATTGGTCATTTGAAGGGAGCGTCTGCCAACTGGTGGAATCACCGGCATTTCCAGCATCACGCTAAACCCAACATCTTCAGTAAGGACCCTGATGTCAACATGTTGCACGTCTTTGTAGTTGGAGAAACTCAACCAGTGGAGTATGGCATAAAAAAGATCAAATATATGCCTTATCACCACCAACACAAGTACTTCTTTCTCGTTGGCCCACCGCTTCTCATTCCAGTTTACTTCCACATTCAAATAATACACACCATGATTTCCCGCCGCGACTGGGTGGATCTGGCTTGGTCTTTGTCTTACTACCTGCGCTACCTGTGCTGTTCTATACCCATGTTTGGCCTGTTTGGCTCAGTGGTGTTTATCAGCTTCATCAGGTTTTTGGAGAGTCACGGGTTTGTGTGGGTGACTCAGATGAGTCATCTGCCCATGGACATCGACCACGAGAAGAACCAGGACTGGCTGTCCATGCAGTTACAAGCCACCTGTAACATAAAGCAGTCCCTCTTCAACGACTGGTTCAGCGGACACCTCAACTTTCAAATCGAACACCATTTGTTTCCAACAATGCCGCGCCACAACTACCACCTGGTGGCCCCGCTGGTCCGCGCACTGTGTGAGAAACATGGGATTCCTTACCAGGTGAAAACATTGTGGCAGGGCTTCGCTGATGTTTTCAGgtCACTGAAACACTCAGGCGACCTCTGGCTTGATGCATATCTGCATAAATGACAACTTTTATTCTTTGCACAGTACCTACAAGGACTGATGTGTTTTCCTCTCATCTGCATTATACATTGATTGTATCTGTTTGGTTTTATAATCCAGTTAATAGTGTGGGATTTATCTTTTCCTAGTGTTGGTGTTATAGTTCAGTTTTTTCAGATTCTGTGCCAGATTTTTAGTGCTCACAGGATTTCTCTGATTTGCCTTACGGTGTCTTGAACAACAGTAGTATGGCGTTATATATACAATTGTGAAAAGTGATTGTCAGATATTTAAAGTGATGTTTTTTCATTATCAATCATGTGATACAGTTTGAACAATAAAATATGACAATTACGTGGACAAGTGACAAATCCAGTGTAATTGAGGATTATTTAAAGTTACTGtacttaatttacaataaaatctGCAGTTACCAA

Function

symbol description
fads2 Predicted to enable oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water. Acts upstream of or within liver development. Predicted to be located in endoplasmic reticulum membrane. Predicted to be integral component of membrane. Is expressed in several structures, including alar plate midbrain region; fat cell; nervous system; optic vesicle; and pleuroperitoneal region. Orthologous to several human genes including FADS2 (fatty acid desaturase 2).

NR:

description
PREDICTED: fatty acid desaturase 2

GO: NA

KEGG:

id description
K10226 FADS2; acyl-CoA 6-desaturase (Delta-6 desaturase)

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039808831.1 True 2068 mRNA 0.47 13 18583257 18592809
XM_039808832.1 False 2037 mRNA 0.47 13 18583257 18592810
XM_039808833.1 False 2015 mRNA 0.46 13 18583257 18592810

Neighbor

gene id symbol gene type direction distance location
fads2 fads2 coding downstream 13245 18561286 ~ 18570012 (-)
myrf myrf coding downstream 53365 18504256 ~ 18529892 (-)
cracr2b cracr2b,LOC103375984 coding downstream 87599 18484495 ~ 18495658 (-)
cd151 cd151,LOC101478403,LOC102787641 coding downstream 98920 18479558 ~ 18484337 (-)
gatd1 pddc1 coding downstream 103776 18477006 ~ 18479481 (-)
ppp1r32 NA coding upstream 10293 18603103 ~ 18606583 (-)
slc25a22a slc25a22,LOC103371512 coding upstream 106500 18699310 ~ 18715445 (-)
pidd1 pidd1,LOC103376010,LOC100690631,LOC102782034 coding upstream 124222 18717032 ~ 18726987 (-)
best1 best1,LOC103376214,LOC104944636,LOC102778597 coding upstream 199645 18792455 ~ 18798253 (-)
epx LOC100692514,LOC102312571 coding upstream 218808 18811618 ~ 18820110 (-)
G85910 LOC103141279,LOC103380252,LOC107097849,LOC106536919,LOC102790651 non-coding downstream 238916 18343542 ~ 18344341 (-)
G85815 NA non-coding downstream 566483 18016107 ~ 18016774 (-)
G85806 NA non-coding downstream 690790 17888867 ~ 17892467 (-)
G85802 arih1,LOC107662282,LOC107591299 non-coding downstream 737471 17842100 ~ 17845786 (-)
G85799 NA non-coding downstream 748373 17829508 ~ 17834884 (-)
LOC120564122 NA non-coding upstream 82453 18675263 ~ 18677985 (-)
G86064 NA non-coding upstream 164242 18757052 ~ 18761076 (-)
G86072 NA non-coding upstream 174685 18767495 ~ 18769138 (-)
G86195 tph1 non-coding upstream 418115 19010925 ~ 19012081 (-)
G86253 NA non-coding upstream 539041 19131851 ~ 19132166 (-)
tmem258 NA other downstream 80391 18499319 ~ 18502866 (-)
lctlb lctl,LOC104967861,LOC107388717,LOC106956364 other downstream 535417 18041628 ~ 18047840 (-)
G85813 rpl4 other downstream 546981 18031008 ~ 18036276 (-)
dennd4a dennd4a other downstream 626628 17893853 ~ 17956629 (-)
syt7a LOC102215913,LOC101470916,LOC102782335,LOC103466506,LOC103141308,LOC107388681,LOC100690092 other upstream 21778 18614588 ~ 18696098 (-)
G86194 tph1 other upstream 414386 19007196 ~ 19010916 (-)
LOC120564082 svip other upstream 563948 19156758 ~ 19160487 (-)
arpp19b arpp19,LOC100693429,LOC102791975,LOC106919339,LOC101065895 other upstream 722575 19315385 ~ 19317478 (-)
G86402 LOC103363837 other upstream 795012 19387822 ~ 19388575 (-)

Expression


Co-expression Network