rps13 (rps13,LOC107586033,LOC107700620)


Basic Information

Item Value
gene id rps13
gene name rps13,LOC107586033,LOC107700620
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053119.1
NCBI id CM020916.1
chromosome length 42187026
location 10072964 ~ 10076964 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039808900.1
TCCGGCGCAGGCGCAAAATACCATTTTCTGTCGCGTGTGCGGCCTCTCTTCCTCTACCGCCATCATGGGTCGCATGCACGCTCCCGGAAAGGGCTTGTCCCAGTCAGCTCTGCCTTACAGGCGCAGTGTTCCCACTTGGCTGAAGCTGACATCCGATGATGTCAAAGAGCAGATCTTCAAGCTGGCCAAAAAGGGCCTGACCCCCTCTCAGATTGGTGTGATTCTGAGGGACTCCCATGGTGTGGCCCAGGTACGTTTCGTCACTGGCAACAAGATCCTGAGGATCCTCAAGTCCAAGGGTCTGGCCCCTGACCTGCCTGAGGATCTCTACCACCTCATCAAGAAGGCTGTGGCAGTCAGGAAGCATctggagagaaacagaaagGACAAGGATGCCAAGTTCCGCCTGATTCTGATTGAAAGCAGGATCCACAGGCTGGCCCGATACTACAAGACCAAGAGAGTACTGGCCCCCAACTGGAAGTATGAGTCCTCTACAGCTTCTGCTCTGGTGGCATAAACGCTACACTTTTGGATTAATAAAAAGATATAAATTGGAA

Function

symbol description
rps13 Predicted to enable small ribosomal subunit rRNA binding activity. Predicted to be a structural constituent of ribosome. Predicted to act upstream of or within translation. Predicted to be located in ribosome. Predicted to be part of cytosolic small ribosomal subunit. Predicted to be active in nucleolus. Orthologous to human RPS13 (ribosomal protein S13).

NR:

description
PREDICTED: 40S ribosomal protein S13

GO:

id name namespace
GO:0006412 translation biological_process
GO:0005840 ribosome cellular_component
GO:0003735 structural constituent of ribosome molecular_function

KEGG:

id description
K02953 RP-S13e, RPS13; small subunit ribosomal protein S13e

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039808900.1 True 560 mRNA 0.53 6 10072964 10076964

Neighbor

gene id symbol gene type direction distance location
LOC120563691 NA coding downstream 192374 9765862 ~ 9880590 (-)
psma1 psma1 coding downstream 492512 9576588 ~ 9580452 (-)
rpl27a rpl27a coding downstream 561596 9506566 ~ 9511368 (-)
LOC120564823 NA coding downstream 562893 9509942 ~ 9510071 (-)
akip1 NA coding downstream 566861 9502922 ~ 9506103 (-)
si:dkey-10o6.2 LOC104921785,LOC100704824,LOC102313177,LOC101482952,LOC102782089,LOC102213179 coding upstream 64819 10141783 ~ 10149106 (-)
tdg.1 tdg,LOC103366448 coding upstream 89360 10166324 ~ 10173342 (-)
LOC120564668 abhd2 coding upstream 309361 10386325 ~ 10397440 (-)
acanb NA coding upstream 372376 10449340 ~ 10467674 (-)
map1ab map1a,LOC101157288,LOC107093210 coding upstream 469811 10546775 ~ 10632785 (-)
G83613 NA non-coding downstream 180209 9891384 ~ 9892755 (-)
G83610 NA non-coding downstream 184292 9888444 ~ 9888672 (-)
G83609 LOC107690399,LOC105905572,LOC104946089 non-coding downstream 185998 9882235 ~ 9886966 (-)
G83606 NA non-coding downstream 291850 9780635 ~ 9781114 (-)
G83538 NA non-coding downstream 560937 9511804 ~ 9512027 (-)
G83669 nucb2 non-coding upstream 55783 10132747 ~ 10134745 (-)
G83699 NA non-coding upstream 107272 10184236 ~ 10184640 (-)
G83703 LOC103379807,LOC105006114,LOC103366387,LOC101079219 non-coding upstream 112855 10189819 ~ 10191806 (-)
G83744 api5 non-coding upstream 125767 10202731 ~ 10204403 (-)
G83746 NA non-coding upstream 138439 10215403 ~ 10277798 (-)
ppp1r15b LOC104921782,LOC104967023,LOC106964268,LOC103156571,LOC103465711,LOC102222546 other downstream 454 10067916 ~ 10072510 (-)
LOC120563773 LOC102779219 other downstream 22430 9894777 ~ 10050534 (-)
LOC120564711 NA other downstream 521545 9542670 ~ 9551419 (-)
cav1 cav1 other downstream 2211736 7848065 ~ 7861228 (-)
met met other downstream 2240093 7738914 ~ 7832871 (-)
pik3c2a pik3c2a,LOC102781015 other upstream 1107 10078071 ~ 10129957 (-)
tdg.2 LOC104948407,LOC103366417 other upstream 97507 10174471 ~ 10180001 (-)
G83826 mfge8,LOC104961859 other upstream 312280 10389244 ~ 10432144 (-)
scamp2 LOC103379909,LOC103364404,LOC104932119 other upstream 566952 10643916 ~ 10662678 (-)
LOC120564603 NA other upstream 629255 10706219 ~ 10714845 (-)

Expression


Co-expression Network