utp4 (utp4)


Basic Information

Item Value
gene id utp4
gene name utp4
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053119.1
NCBI id CM020916.1
chromosome length 42187026
location 28959390 ~ 28974789 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039808915.1
TTTTAGCCTGTTTGGGTGAATCATTACCGGTTCAAAGGTTCTCAACGTGGTTCTTGATGTTTTCCAGCGTGTGAAGCGAATAGCAAAGAAAGTTTAGTGACcgtaaagaaaaataaacagcGGTAAAAATGGGTGAGTTCAAGGTGCACCGTGTTCGGTTCTTCGACTACATGCCCACTGCTATCCGAGCCATGGCGTTTAACAGCCGCACCGAGAGGCTTGCTCTGGCCCGGGCTGATGGAGCTCTGGAGATCTTCAACTTCGCTGACAACTACTTCCAAGAAAAGGTCATCCCAGGACAGGACGGCAGGGCTGTTGAGGCTCTGTGTTGGGTGGGCCAGCGTCTGTTCAGTGCTGGTTTGAATGGAGAGATCACAGAGTATGACCTGGAGAACCTGAGGCCCAGGTACACTGTGGAGGCCTATGGAGGACCAATCTGGACCATCAGTATCAACAGCCAGGGAACACTGCTAGCGGTTGGTTGTGAGGACGGGACAGTAAAGATGTTTGAAATACTGGAGGAGAGAATTCAGTTTCAAAGAAACCTCGACAGGCAAAAAGGTCGTattatctctctctcctggCATCCCTCTGGCACACTGAttgctgcaggcatgatggacaTGATCAGAATCTTTGACGCCGAGACAGGCCGCGCCACACACAGACTGCTGGTGGAAAGAGGTGTCGGAGCATCAAAGAGCAGAGAGGTGGTGGTTTGGAGCATTGTCTTCCTGTCTGATCACACCATCGTTAGCGGTGACTCTGCCGGAAAGGTCCAGATCTGGGACGGAGTCACGGGAACTCTGGTCAGAACTCATTTGGTCACCAAGTGGGACGTTCTGGCTCTGTCTGTTTCAAAGGATGAGAGCAGTCTGGTAGCTGGGACTTCAGAGGGCACAGTCGTCCAGTTTCAGTTCATCTCCTCTACTGTTGACCAGCAGGATAAGGAATGGGTCCGAACTAGGACCTTTAAAAACCACTCGCATGATGTGAGGGCGCTCGCCCACACCGAAACCGCAGTGGTTTCTGGAGGTATGGACACCCAGCTGGTAGTGCGACCCCTCTTGGACAAGGTGGAGAAGAACACCCAGGAGTCAGCGCTGCGCAAAATGTCTCTCCCACATAGAAGCCTGGTCTGTTGTGCAAAGAAAGCAGGACTGCTGCTCTTCCAGTTCCCTGATCATTTAGAGCTGTGGAGACTAGGGGAGAGCGATGGACATGGGAAGCCTGGTGACAGTCTACCTGTGAAGAGAAAACCAGAGAAACTGATCCAGCTGAAGAGGAAGGGAGAGGATCATATCTGCTGCAGTGCTTTGTCTCCATGCGGAGGCTGGCTGGCATACTCTACTGTCACCAGTTTCCGTCTTTACAGATTACAGAACAACAACATCAGCGTCACCAAGgTGTCCAAACTACCCAAGGACCTTCGCTCGGCCCACCAGCTCTGCTTCTCCCCCGACTCCTCCAAACTCTTTGCTTCCTCCAGCCATTCTTCAGTCATCGTCGTTGGCCTCAACCAGCCGGAGTGCAAATACCTTCATACCCTCAAACCCAAATCAGGCTCCAGACAGCCAGTCCACCTGCTGTTTGCCAGTGAGGATGGCAAGTGGCTCGCTACAGCAAACGCAGACTGTGAGATCCATGTCTACAACCTTGACAAGCTAAAGcttCATTGTACAGTTCCAGTGTACAGCTCATGTCCCACTGCCATAGCCATCAACCCAACAACCAGCAACCTTGTCGCGGTGCATGCTGACCAGCAGatctTTGAGTTCTCTCTGGTGCAGAAGGAGTACACGGAGTGGAGTCGGAAGCTGCAGAAACAAGGACTGCACTCTCTGTGGTTGGAGAGGGACACACCCATCACCCGCGTCGCCTTCAATCCTAAAAATCCAGCTCACATCATTCTGCACGACATGTTCATGTTCTGTATCAttgaccagagtctgCCCCTCCCTGAAGCAAAGACTCCATTCTACAATCAGATGACACTGAGGAGTCTTCCTGAGCCACAGAGGCTCGTACACAGCCACGCCTTCAAGATATGCAAGAATTTCCAGCATCTCATGTGTGTGAGTTTATTGGAGGACCATTCTCTGGTCGTAGTGGAGCGGCCCCTGCTGAACATCACGTCTCAGCTGCCTGCACCTGTCCGGCAGAAGAAGTTTGCTACATAAATGAAATGGAGGTGTCTCAGCCGGAACGTTCATGTCAGAGGAAAGGATTGTTACCGCACTGTAACTCTTGCATCTAAAATCATTTTCAACAAGTGTTAATGTGTCACCCCTTTGTAAAATAATGCTTTGATAAAGTAATAAATTACACAAATTAcaaagtgtgtgggtgtgggtgggttcCAACACTTTCATGTTTCTTAAGG
>XM_039808916.1
ATTACCGGTTCAAAGGTTCTCAACGTGGTTCTTGATGTTTTCCAGCGTGTGAAGCGAATAGCAAAGAAAGTTTAGTGACcgtaaagaaaaataaacagcGGGTAAACGTCGTTACTAACGATTTTAAATACTGTTGAACTTAAAGGAATTAATATAAAAATGGGTGAGTTCAAGGTGCACCGTGTTCGGTTCTTCGACTACATGCCCACTGCTATCCGAGCCATGGCGTTTAACAGCCGCACCGAGAGGCTTGCTCTGGCCCGGGCTGATGGAGCTCTGGAGATCTTCAACTTCGCTGACAACTACTTCCAAGAAAAGGTCATCCCAGGACAGGACGGCAGGGCTGTTGAGGCTCTGTGTTGGGTGGGCCAGCGTCTGTTCAGTGCTGGTTTGAATGGAGAGATCACAGAGTATGACCTGGAGAACCTGAGGCCCAGGTACACTGTGGAGGCCTATGGAGGACCAATCTGGACCATCAGTATCAACAGCCAGGGAACACTGCTAGCGGTTGGTTGTGAGGACGGGACAGTAAAGATGTTTGAAATACTGGAGGAGAGAATTCAGTTTCAAAGAAACCTCGACAGGCAAAAAGGTCGTattatctctctctcctggCATCCCTCTGGCACACTGAttgctgcaggcatgatggacaTGATCAGAATCTTTGACGCCGAGACAGGCCGCGCCACACACAGACTGCTGGTGGAAAGAGGTGTCGGAGCATCAAAGAGCAGAGAGGTGGTGGTTTGGAGCATTGTCTTCCTGTCTGATCACACCATCGTTAGCGGTGACTCTGCCGGAAAGGTCCAGATCTGGGACGGAGTCACGGGAACTCTGGTCAGAACTCATTTGGTCACCAAGTGGGACGTTCTGGCTCTGTCTGTTTCAAAGGATGAGAGCAGTCTGGTAGCTGGGACTTCAGAGGGCACAGTCGTCCAGTTTCAGTTCATCTCCTCTACTGTTGACCAGCAGGATAAGGAATGGGTCCGAACTAGGACCTTTAAAAACCACTCGCATGATGTGAGGGCGCTCGCCCACACCGAAACCGCAGTGGTTTCTGGAGGTATGGACACCCAGCTGGTAGTGCGACCCCTCTTGGACAAGGTGGAGAAGAACACCCAGGAGTCAGCGCTGCGCAAAATGTCTCTCCCACATAGAAGCCTGGTCTGTTGTGCAAAGAAAGCAGGACTGCTGCTCTTCCAGTTCCCTGATCATTTAGAGCTGTGGAGACTAGGGGAGAGCGATGGACATGGGAAGCCTGGTGACAGTCTACCTGTGAAGAGAAAACCAGAGAAACTGATCCAGCTGAAGAGGAAGGGAGAGGATCATATCTGCTGCAGTGCTTTGTCTCCATGCGGAGGCTGGCTGGCATACTCTACTGTCACCAGTTTCCGTCTTTACAGATTACAGAACAACAACATCAGCGTCACCAAGgTGTCCAAACTACCCAAGGACCTTCGCTCGGCCCACCAGCTCTGCTTCTCCCCCGACTCCTCCAAACTCTTTGCTTCCTCCAGCCATTCTTCAGTCATCGTCGTTGGCCTCAACCAGCCGGAGTGCAAATACCTTCATACCCTCAAACCCAAATCAGGCTCCAGACAGCCAGTCCACCTGCTGTTTGCCAGTGAGGATGGCAAGTGGCTCGCTACAGCAAACGCAGACTGTGAGATCCATGTCTACAACCTTGACAAGCTAAAGcttCATTGTACAGTTCCAGTGTACAGCTCATGTCCCACTGCCATAGCCATCAACCCAACAACCAGCAACCTTGTCGCGGTGCATGCTGACCAGCAGatctTTGAGTTCTCTCTGGTGCAGAAGGAGTACACGGAGTGGAGTCGGAAGCTGCAGAAACAAGGACTGCACTCTCTGTGGTTGGAGAGGGACACACCCATCACCCGCGTCGCCTTCAATCCTAAAAATCCAGCTCACATCATTCTGCACGACATGTTCATGTTCTGTATCAttgaccagagtctgCCCCTCCCTGAAGCAAAGACTCCATTCTACAATCAGATGACACTGAGGAGTCTTCCTGAGCCACAGAGGCTCGTACACAGCCACGCCTTCAAGATATGCAAGAATTTCCAGCATCTCATGTGTGTGAGTTTATTGGAGGACCATTCTCTGGTCGTAGTGGAGCGGCCCCTGCTGAACATCACGTCTCAGCTGCCTGCACCTGTCCGGCAGAAGAAGTTTGCTACATAAATGAAATGGAGGTGTCTCAGCCGGAACGTTCATGTCAGAGGAAAGGATTGTTACCGCACTGTAACTCTTGCATCTAAAATCATTTTCAACAAGTGTTAATGTGTCACCCCTTTGTAAAATAATGCTTTGATAAAGTAATAAATTACACAAATTAcaaagtgtgtgggtgtgggtgggttcCAACACTTTCATGTTTCTTAAGG

Function

symbol description
utp4 Acts upstream of or within hepaticobiliary system process. Predicted to be part of 90S preribosome; small-subunit processome; and t-UTP complex. Is expressed in several structures, including alar plate midbrain region; digestive system; immature eye; nervous system; and segmental plate. Human ortholog(s) of this gene implicated in cholestasis and primary biliary cholangitis. Orthologous to human UTP4 (UTP4 small subunit processome component).

NR:

description
U3 small nucleolar RNA-associated protein 4 homolog

GO: NA

KEGG:

id description
K14548 UTP4, CIRH1A; U3 small nucleolar RNA-associated protein 4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039808915.1 False 2383 mRNA 0.51 17 28959390 28974789
XM_039808916.1 True 2414 mRNA 0.50 17 28959390 28974767

Neighbor

gene id symbol gene type direction distance location
cracr2aa LOC103365762 coding downstream 416139 28519058 ~ 28543251 (-)
tspan33b LOC104940279,LOC100694777,LOC101482493,LOC106573176,LOC105926564 coding downstream 766730 28176802 ~ 28192660 (-)
tbxas1 tbxas1 coding downstream 1148310 27799006 ~ 27811080 (-)
ccdc113 NA coding downstream 1168416 27786672 ~ 27790974 (-)
LOC120564488 LOC101485419,LOC102777949,LOC104949269,LOC102291458,LOC100702099 coding downstream 1283532 27673598 ~ 27675858 (-)
has3 has3 coding upstream 14166 28988955 ~ 29018749 (-)
tango6 tango6 coding upstream 49488 29024277 ~ 29067687 (-)
c8h11orf49 LOC104936424,LOC102313439 coding upstream 310927 29285716 ~ 29295960 (-)
LOC120564361 LOC103374757 coding upstream 380525 29355314 ~ 29363745 (-)
dnaaf4 NA coding upstream 433371 29408160 ~ 29431798 (-)
G88625 zc3h18,LOC102790709 non-coding downstream 19161 28857471 ~ 28940229 (-)
G88636 NA non-coding downstream 69706 28888004 ~ 28889684 (-)
G88613 NA non-coding downstream 166406 28792712 ~ 28792984 (-)
G88596 NA non-coding downstream 435973 28518156 ~ 28523417 (-)
G88513 NA non-coding downstream 977096 27975965 ~ 27982294 (-)
G88706 NA non-coding upstream 116241 29091030 ~ 29093595 (-)
G88709 NA non-coding upstream 123480 29098269 ~ 29098610 (-)
G88711 NA non-coding upstream 128599 29103388 ~ 29103736 (-)
G88712 NA non-coding upstream 129166 29103955 ~ 29106814 (-)
G88715 NA non-coding upstream 161424 29136213 ~ 29136422 (-)
tspan9a tspan9,LOC103365760,LOC106534164,LOC101481610,LOC108237543 other downstream 576675 28139286 ~ 28382715 (-)
LOC120564781 NA other downstream 1134429 27812245 ~ 27824961 (-)
LOC120564276 LOC103371718,LOC104949276,LOC102797857,LOC100696892 other downstream 1309328 27623990 ~ 27650062 (-)
G88379 panx2 other downstream 1603614 27354972 ~ 27355776 (-)
zgc:153031 LOC100703984,LOC102237950,LOC106523206,LOC105917737 other downstream 1730018 27223962 ~ 27229372 (-)
G89085 NA other upstream 1747319 30722108 ~ 30722503 (-)
G89241 NA other upstream 2268379 31243168 ~ 31268469 (-)
G89365 NA other upstream 3131834 32106623 ~ 32108066 (-)
fa2h fa2h,LOC106937201,LOC102797665,LOC107674969,LOC107707436,LOC107589178,LOC104955910,LOC107714073 other upstream 3812009 32786798 ~ 32851495 (-)
znf319b znf319,LOC102797175 other upstream 3931216 32906005 ~ 32913030 (-)

Expression


Co-expression Network