rfwd3 (rfwd3)


Basic Information

Item Value
gene id rfwd3
gene name rfwd3
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053119.1
NCBI id CM020916.1
chromosome length 42187026
location 5231544 ~ 5258261 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039808961.1
ACGTACGATCTTCGGCGGTGACGTCGCAACAGGATGGGGCGGGCAGCGCGAACTGGCGCGGGGAGATTCGATCCCTGACCGCGGTCCTGACTGCTGGAAGTAACCCGTAAACTCACCTCAACCAGACCCGTTTGATTTGTGTATTTGCCGTGGAGTCATGTTGTTCCTTTGTGTGGTCCTCCGGAGCGGGGTCGGCGGCTGTTAAACCTTCACCTCCATACAGATGGAGGCCATGGAGGTGGACTCCCCCGGGGAGCTGCAGGGAGGAGGTGGCAGACAGCGAGAGATTGCTGCAGCGGCCGCGGACGCCAACGCTCCGCACGTCATCTCGGACTCCGGCAGCAGCACCGAGGTGGACGAGGACGAGGACGACGACAACGAGAGAGGGCAGACGGCGGCTCGTGCGCCGCCCAGGCTTCCTGCCACCTGGGCGTTCAGTCAGAGAGCGGTGAGCGGCTCCGCGGCTTCGCCTTCAGCCGCTCATGGCACACCAATGCGGAGGAGGATCAGGCAGGGCCTCCGGGTGCACTACCCCAGCCAGACCGCGGCGCCCTCCAGAGGCTTTCCCGACTTCCTGCTCCGAGCGCCGGCCGCCAGCGTAGCTCAGCCAGAGTCCGGCAGCACCACCGAGGTCAGCGAGTctgacgaggaggaggaagaggaggggggcaACCGAGAAGCCACCGCTGCTGCTCCGGAGCCCGTCGTCCCGGCGCCGCCTGCTAGTCCTCGCCGCAACGCCGCCGTCCAACACGCACAACCACAGGAAGCTGGTCCAACCAACTCCGGTTCAGCTGCAGACGGCGAGAGGACAGAAACGTCCAATCAGAACGTCCAGCCGGTCCCTGCGGCCTCGGCTTCTGCCAAGCCGCCGCAGGCCGAAGAGGGCGAGGGCGATATCTGCTCCATCTGCTTCGAGGCGTGGACGACGGCGGGCGAGCACCGGCTGTCCGCTCTGCGCTGCGGACACCTCTTCGGCTTCACCTGCATCCAGCGCTGGCTGAAAGCTCAGGGCCCGGCCGCCAAGTGTCCACAGtGCAACAAGAAAGCGAAGCGTTCCGACATCGTTCTGCTGTACGCTCCGAAGCTGAGAGCGCTCGACAACTCCGAGCAGGAGAGCTTAAAGAAgTCTCTGGAGCAGGAACAGTCTCTGAGGAGAAAGGCTGAACTGGAATCAGCTCAGTACAAACTGAAGCTGCAGGTTGTCACCAACAAATACGGACAAGCACAACAAGAGCTGCAGGAGCTGAGGGCTCTGATGGCTCAGGCTGGCAGAAGCTCAGTCCcgtcctcatcctcctcctcttcctcctttgcGTCCGCCTCGCTCCTCCTCGGCCTGTCCCAGAGGGCGGACGGCTCCAGGATGGCCCAGTACAGTTTCTCCAAGGCGGTGCTGGTGTCCCAGGCTGGGAGCTGCAGGGTTTTATCCTACTGTGAACCTCTGAGCTGCCTGCTGGCCTCGCAGCCGTCCCCACACTCCACTCTGGTGCCCGGTTGTGGGGTCAAGAAGGTGAGCGTGGTCAACATGAAGGCGAGTCAGTACGTTCCCATCCACAGTAAACAGATCCGAGGTCTGTCCTTCAACAGACAGAACGACAGTCTGCTGCTGTCGGCCGCTCTGGACAACACCATCAAACtcaccagtctGCTGACCAACACTGTGGTTCAGACCTATAACGCCGGTAAACCCGTGTGGAGCTGCTGCTGGTGTTTAGACAACAGCAACTACGTCTACGCGGGTCTGAGCAATGGCTCGGTGCTCGTCTACGACACCAGAGACACCAGCACGCACGTCCAGGAGCTGCAGCCGCTCCGCTCCAGGTGTCCGGTGGCGTCTCTGTGCTACGTCCCGCGGGCGGCGTCCAGCTCCTTCCCTTGTGGCGGTCTGATCGCCGGCTCCCTGGAGGGCGGCTGTTTCTGGGAGCAGGTCAACGAGACCACGTACAGGCCGCACGTCCTGCCGCTGGAGAGCGCCGGCTGCACCGACATCCAGGTGGAGACGGAGAGCCGACACTGTCTGGTCACCTACAGGCCAGGCCGCTCCAACCCGTCCCTGCGCTGCGTCCTGATGGCGTTGAACAGGACGCCTCAGCAGGACTCCAGTCAGCTGCCCAGCTGCTCCTGCGCTCCGGTGCAGACGTTCAGCGCCGGCTCGTCCTGCAAACTGCTCACCAAGAACGCCGTTTTCAAGAGACCGGACGGAGGCGGGACGCTGGTCTGCGCCGGGGACGAGGCCTCCAACTCCACTATGGTGTGGGACGCCGGCAGCGGCTCTCTGCTCCAGAAGCTTCCGGCCGACCTCCCGGTGTTGGACATCAGCCCGTTCTCGGTGAACGGCGAGCACTTCCTGGCCTCGCTCACCGAGAAGATGCTGAAGCTCTACAGGTGGGAGTGAACTGGACGGACTTCACAAACTTAGGAAAtacaactaaaaaaaaaacaaacacacaaactcagTCCCAGAGGAGATGACTCAGTCCGTGTGCAACTGTGGAAAAATCTAAAAGCTGCTCAACTTTTCAGTTTACatacgcaaaaaaaaaaacccggaTCGCCCCTAGGAAACATTTATGGTTTattcttctttaacaaaaaaaagcatctaCGTTACTGAACATTTGGTGACCGTTGGCCCgcacagaaaacaaaatgaagctGGCGGTGTGTGATAACTGGACGTTTCTCCCTTAAAGCCGGAAGATTGTGTTTACATGAGTCACATTACAAACATATACGAGTCCTTTTCGTGTTCGGATCTTCTCGTTCTGGtggttttctctcctgtgttttTAGTCTGacggaagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtctcttcaaCTGCAAATCATGCatactttattttcatgaccattTTCAGGCTGTTTGGATTCATCATGTATTTTTCCTACATTCTCACGCAGCCATTTACTCCCATTCATCATTTCTGTATAGTATGAAAATCAATCCATCGCCGTCAACATCGAGTCAGAGTTGCAACTAACCTTTTATCATTTATCCTGTTGATTGTCTTCTCCTATTATCTGACGAattgtttggtctgtaaaatgtgaGAACATCGTGAAAAATAGCCAACATGACGTCTTCACATTGCTTGCTTGTATGACCAACAGTCGAAAACcagaagatattcagtttaacacaaaataaaacacaaaagatattcagtttaacacaaaaaaaacccccagAAGATATTCACTTTGTgaacacacaatacaacaaaacaaagttgTCACATTTCAGGAGCTCGGATCATCAAACATTTCTCTTTTTGCTTCAAAAATGTGATTGAAATGATggatcgattatcaaaatagttgtttAATTCATCTCTAATCAAGTCTGCATTTCTTTTTGTAACTTCTACATTGTTTTGTGGTAATGCAGCAAGCACAGATTAATTGGAGCCTGACTAATATATTGGCAGTACTGATATTATCGGACGATTGTTATATAATCGCACATCATCAGCGTATATAAGTCGTTGAAGAGAAATGACAAATGTTTGTCATTTAGAAAAAGGATCTCCTTtaaatagtttgtccaccagggAGCACTGTCACTGCAGAATCTGCAAAGTATTCAGTACAATTCCTAGTAAAATAGGATTTTTTGTTATTAATCACATTTAAGAGATGGTCTTTGGCTTTAAAAGAATCCCGTatagagaggcgaagtccctccccttccggggGATCGCCACGGGACCTTAATtcgaaaaaaaatatgaacggtagtgaacggggaaaGACAATTTACTTTGTGATCCCGTtagaattgagccatggattacacataTCCTTTTAGTCAATTTAAAAGCTATTTTTTCaagaaaattatcttttaaaccgataaacatcatatgtgtaagcCATGGTTCAATTCagacgggatcaaaaaataatttctttcaccatcatgtatatttattttttcacgaATTAAGGTCCCGTGGCGGTCCACTGGAAGGGaagggacttcggctctctattggTTTTTGTCTCCCATTGAAACGTTAACGTAACCACATTTTCAAACTGTacagaaatgaaaaagaaacgTAAAGACTGCTTGGagaaagtaggaaaaaaaagcgCCGACATTTCTAAACCCCGGCAGCGTCGTTTGCGGTGACGTAAAGGACGGATGATTTGTAGTGAGAGCGAATTCACGCCCTCTGAAGTAAGTGGTTCCTCAGATTAAAGGAGCATTACCACTGGTTTAACTACAGCTGGTTTGTGTTGTACATCACTGCTGATCCTTTTCCAAATCATATCAGTTTTTACGTTGTTTTCCAACCCACTTTATTTGACTTTTGAAGGACTCTAACAGACGGTTGATTACAGCAAAGCGTCGCTATGCTTCTTGGTTGTTTTGGTGAAAGTTTGCCTGGGCAGGAAGTTCGTTAAAAACATTCAGAGTTCAGGGTTGTCCCCCAGAAAGTTGCTTAGCCAGGTGGCAAGTATCTTTTTCGACGGGGGCCAGTCGCAGCCTGACGGCAGCATTACTGTAGGGCCCTAAAGTTTCTGTGATCACAGAATCGTTGAAGGAATCACGAAAATGAGAATTTTAAAACCCTAGAAGACAGATTCCATAGGGCCatacattaagtcagtgctaaatgCTAACTGGAGATTTTTAAATATGACGttaatgttttatatatgtatgtatgtatgtacgtatgtaAACCAAATCCCCCTAAATGATTCCAATAAAACAATTCCGATGAAAATcgtaatttttatatatatatatatatatataaataaataaataaataaataaataaataaataaatttaaaaaaaaaaatcatttaggGGGATTTtcgttctcgatgcccaatcctagtcAACGCCAATAGTGACGCCAATATTCCCGACCCAGCGCGTTTAGATCTGACGCTAAAGGAGTCTTTTAGCGTCAGTAAAAAAAaccgccaaaggcacctgaccaacgGTCCGTATTTTGCGAGATGGGAGCGAGGATGTGTTGCGCCTTTCTGCCGCTTGTTAAACGGAGAGTCTGGGATGTCGGAGGATCCTTGAATCCACCGTGACCGAGAGGTTAAAAAGTTAGAGGTTAGCGAGTCGGTTTTGCGTCGACTCGCGGACAGTACACCACTTCGACAAAGATGACGAAGACGACTAAATGTTGACCACGCTGAGACGAACTGAACTCCGTGAAGTCAATGTGAGAAACTGACGTGATGTAGAGATCGGTCAACAGATGTGTGAAGCGTTCATGGTTTGTAGTTAACGGGACCAAACGTGAGACTCCACCGGTAGATTCTTCTAGAAGTAACGCCCAGGCCTGTGAAAGATGTCTCAGACTTCAGACTTTTCTTCAGctcaatgactacgtttacatgcacataatattcagtttttttttgctcttattctgaaaaaaagacgatattctgCCTAAGCTGTTTACACGGTTTATGAAAGAGAATATTCCACTTAcattcccgtttacatgcagccgtgcaaaataggatttttccaaagttttccagcggtggcggacttgttggagCGTGCGAACACAgcttccctctttcattccttcaaccagcttcttttAAACATCGGCGTTGTGATATTTCCTCATTTCCAAAAAAAcggttgatatccaagtcttagataatgtttaaaaagtaGCTGtagtgtttctccttcttttcttttggccGTGCATCTCTACCGCGGCCCTGCAAACTgtcggctggttggtttgtgtacagcaaccgtagcaacgcacagagctgaccgaacactgtaaactgtcacaaactgttgtaaaaaccctgattgagacgcagattctaaatcaaatgtaaaagatgtccatattctgaataatagtggCGTATTAGTATGCGTGTAAACGTGGTCAGTGAGAATGCAGGAAAACGGGAAAACCcacttttattttctacatTTCCCTCACACAGTCCGTTGCCACGGTTTCCACCGCGGTTTGTCACCATCTGTCCAGTTTTGGATTGTTTTTAACTTCCCTCTGAACCCAAACATTAAGTGCCAAAGGACTCAGCTGTTGTAAATGTTTACTTTcctcttgtttttctttctaaaaggaagttgtatatatgtatatttgctACCAACTGTTTGTGTACAACTTCAAAGTTAATAAAAACGTgagttatttttaattaaa

Function

symbol description
rfwd3 Predicted to enable ubiquitin protein ligase activity. Predicted to be involved in double-strand break repair via homologous recombination and protein ubiquitination. Predicted to act upstream of or within interstrand cross-link repair. Predicted to be located in nucleus. Predicted to colocalize with site of double-strand break. Human ortholog(s) of this gene implicated in Fanconi anemia. Orthologous to human RFWD3 (ring finger and WD repeat domain 3).

NR:

description
PREDICTED: E3 ubiquitin-protein ligase RFWD3

GO: NA

KEGG:

id description
K15691 RFWD3; E3 ubiquitin-protein ligase RFWD3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039808961.1 True 6298 mRNA 0.49 13 5231544 5258261

Neighbor

gene id symbol gene type direction distance location
LOC120564005 NA coding downstream 8867 5168486 ~ 5222677 (-)
afg3l1 LOC100701252,LOC102294241,LOC102199323 coding downstream 227340 4984680 ~ 5004204 (-)
LOC120564251 LOC103357242 coding downstream 306238 4912293 ~ 4925306 (-)
zgc:172145 NA coding downstream 541015 4681350 ~ 4690529 (-)
LOC120564256 myod1,LOC104930627 coding downstream 554174 4668482 ~ 4677370 (-)
LOC120564558 NA coding upstream 5208 5263469 ~ 5283349 (-)
LOC120564561 NA coding upstream 34519 5292780 ~ 5307882 (-)
LOC120563745 NA coding upstream 152965 5411226 ~ 5417693 (-)
LOC120564748 NA coding upstream 166395 5424656 ~ 5428224 (-)
tmed6 NA coding upstream 186163 5444424 ~ 5447834 (-)
G82609 NA non-coding downstream 80332 5150981 ~ 5151212 (-)
G82607 NA non-coding downstream 85892 5145412 ~ 5145652 (-)
G82603 NA non-coding downstream 93227 5137436 ~ 5138317 (-)
G82600 NA non-coding downstream 99327 5131196 ~ 5132217 (-)
G82599 NA non-coding downstream 100447 5130775 ~ 5131097 (-)
LOC120564560 NA non-coding upstream 27610 5285871 ~ 5289540 (-)
G82669 NA non-coding upstream 338048 5596309 ~ 5605953 (-)
G82687 NA non-coding upstream 383536 5641797 ~ 5644736 (-)
G82689 NA non-coding upstream 396753 5655014 ~ 5691020 (-)
G82749 NA non-coding upstream 525210 5783471 ~ 5829244 (-)
urahb NA other downstream 219603 5004392 ~ 5011941 (-)
G82246 NA other downstream 953185 4276820 ~ 4278359 (-)
LOC120564247 NA other downstream 1063758 4076378 ~ 4167786 (-)
G82147 NA other downstream 1653160 3494391 ~ 3578384 (-)
G82122 NA other downstream 1851016 3380027 ~ 3380528 (-)
faap24 LOC102781697 other upstream 218963 5477224 ~ 5483533 (-)
LOC120563994 LOC103354574,LOC102783264,LOC102204057,LOC100698332,LOC104935123,LOC102307694,LOC101486521 other upstream 1915761 7174022 ~ 7197808 (-)
G83064 LOC100699133 other upstream 2029634 7287895 ~ 7291427 (-)
met met other upstream 2480653 7738914 ~ 7832871 (-)
cav1 cav1 other upstream 2589804 7848065 ~ 7861228 (-)

Expression


Co-expression Network