slco3a1 (slco3a1)


Basic Information

Item Value
gene id slco3a1
gene name slco3a1
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053119.1
NCBI id CM020916.1
chromosome length 42187026
location 16213775 ~ 16254088 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039808991.1
GCTGCCTGCTACACAGCGCCTCTAGGGCCGTGCGTGCATGtgctgacagaggaggagagtaGTAGAGAGAGGTGGGAgcgcagagacagagagcagagcagtCATTGTGCGTGAAGGACCCTGACAGTCCGTAGCGGCAGGAGttggaagagaggaagaagacgCCTGTAAACAGTACCTTCACCTGCAGCTGAAACCCACAAAACCCCGCGGCGAAAACATGCAATTTGACAGAAATTCGCGCGTGGTTTAACGTTACTTGTGCCTCTGCAAACACCTTCAGGAGGGAGTTCACATGTTTCTGTAGGCTACGTCGACGAAGAGGCAATGTTTAGGCGCAGACTACCGGCAGAGCCCCGTGGAGTTTGGACGTGTGTTTCGTAGCTTGTCACATGTATGAAGACTATTTACTGAATCAGGAGAAACCGCAACAAGAAGCACCGCGAATGTAGTCTTCAGGGTGGAAAGCGAAACACTGTACCTGCCAGTGTCTTCCCGCGGGCATCCTCCTGCGTTTTTCGGATTCTCGCAGTACTGTGTGGGTAAAGTAAAGGGAGGATGCAGGTGAAGAAGCACCGGGACTCGGACCGGAGCGGCGGGGACATGCTGGAAGGAGACGGCCTCCGCAAAAACTCCTCATGCTTCTCAAATATCAAGATATTCTTGATATCGGAATGCGCCCTCATGTTGGCTCAGGGCACCGTTGGAGCGTACCTGGTGAGTGTGCTGACCACCCTGGAGCGGCGGTTCAACCTGCAAAGTGCTGATGTAGGAGTGATAGCCAGCAGCTTTGAGATAGGCAACCTGGCTCTCATTCTGTTTGTCAGCTACTTTGGGGCCAAAGCACATCGGCCCCGTCTGATCGGCTGCGGGGGCATCGTCATGGCGCTCGGCGCTCTTCTCTCAGCTCTGCCTGAGTTTCTAACTAAGCAGTATCAGATAGAGGAAATGTGGAGGACTGACATGGGTCGGGATGTTTGCTCCAACTCCAGCAGCACAGACGTTCAGTTGGCTGAGGACGTGATATgcggcaaaagggccaacaccAACATGATGTACCTGCTGCTGATTGGAGCTCAGGTCCTGCTGGGGATCGGAGCCACACCGGTGCAGCCCCTGGGGGTGTCCTACATCGATGATCACGTGAAGAAGAAAGACTCATCACTCTATATAGGAATCCTCTTTTCTACACTGGTGTTCGGGCCTGCCTGTGGCTTCATCCTCGGCTCCCTCTGCACTAAGTTCTACGTAGATGCTATCTTTATTGACACTGATGCGCTGGGCATCACTCCAGAAGACCCGCGGTGGATCGGTGCCTGGTGGGCAGGCTTCCTCCTGTGTGGTGCCTTACTCTTTTGCTCAGCTCTCTTTATGTTTGGTTTCCCTCAGTCACTGCcatccacagagagagaggagggggcagACAGTGAGCAGGTTATGCTTCCTCCCTCTCCTAATGCAGAGTATGAGACTCCAAAGCCCAGCAATGGGGTTGTACGCAGCCCCGAGCCTGCCAACAGCCCCACCTGCTGTCAGCAACTCAAGGTGATCCCCAAGGTGACCAAGCACCTCCTGTCGAACCCAGTGTTCACCTGCATCATCCTGGCAGCCTGTATGGAGATCGCGGTTGTGGCGGGCTTTGCAGCCTTTCTGGGGAAATACCTCGAGCAGCAGTTCCATCTCACCACCACCTCAGCGAACCAGCTGTTAGGTATGACCGCCATTCCATGTGCATGTCTGGGGATCTTCATGGGCGGTCTGCTGGTGAAGAAGCTGAACTTGTCGGCGCTGGGAGCCATCCGCATGGCCATGCTGGTCAACCTGATCTCCACCGCCTGCTACGTGTCCTTCCTGTTCCTAGGCTGCGACACCGGCCCTGTCGCAGGAGTGACAGTCCCATACAGAAACGAGACTCTGCGGGTGGGCGAGAAACCAGAAGCCCAGTGCATCAGTCGCTGCAACTGCTTCACCTCCTCCATCAGCCCCGTGTGCGGCTCCAACGGTGTCACCTACCTGTCCGCCTGCTTTGCCGGCTGCACCGGAACAGGAAACTCTCGGACCACATCGAACATCTCTCAGAACCTGACGGGATGCGCTTGTGTATCCTCTGAGAGTGAATTGGCCACAGCGGTTCCAGGGAAATGTCCGACGCCGGGCTGCCAGGAGGCTTTCCTCGTCTTCCTGTGTGTGATTTGTGCCTGCAGCCTGGTCGGAGCCATGGCCCAGACGCCCTCGGTTATCATCCTAATCAGGACTGTGAGCCCGGAGCTGAAATCGTACGCACTTGGAGTGTTGTTTCTTTTGCTACGACTCCTCGGATTCATCCCCCCTCCTCTGATCTTTGGTGCTGGGATCGACTCCACTTGCCTTTTCTGGAGTTCAGACTGCGGCGATCGGGGTGCCTGCCTGCTGTACGACAACGTAGCTTACAGGCATCTGTACGTGAGTCTCGCCATCATCCTCAAGGGCATCGCTTTCCTTCTCTACACCACTACGTGGTATTGCTTACGCAGGAACTACAAGAAGTACATCAAAAGTCACGAGGGCTACATGTCGGCGACGGAGTTTTACCCTTCACTCACTGACGGCCCCAAACCAGTCGACAGGACAAAGTTTATATATAACCTAGAGGACCATGAGTTTTGTGAAAATATGGAGTCCGTTTTATAGTTTGTTATGCAAGAAAAGGACAATATGGACATGCATATTCTCTCAAAGGAATATTTGATTCTTCTTTTCTTGAAAggataaaacaaaatgttttcaatAAAGGCAATCTATTTAACGGCCCGTTCAGGTCACAGGAGACGTTGCTCTCTACTGCGCTCCACATCCTCGCTAAACTTTCAAGGGTCCATTTTAGTTTACGTATCAGCGAGGTGTTGTCCAGTGTTGCCGATGAATTCCTGTGTTGACTTGGTGGTAGAAGACAACTACAGTTTAGCTCAGTCCTAGTTGATAAGTGAGTGGTCATGATGCTTTTACAACTAGTTGCCATATTGCTTTAGGTCTGTCATGATTCCAGTGATCTGTGAAAAATGGCAGTCAGTCAGTGCACTGTGTGTTCTGCCTGTCACTCTCAAAAATTTGAtttttaagataagataaaaaaaaaaagaattgggcCGGTTCTTCATTTTCAGTTATACATATTTAAAGTTGCCAAGTGTTTACAAACTAATAGTTCATCtgttaatgcattttattttaatgcaggACGGTTGAGAATGAAACAAAATGAGAATAGAAAACACCCTGGCTGGGTTATTAGAGTGGCCTAGTAGATGTTTTAACTGCCAGTAAAGTCTAATAACTTAAAACACGGTAGTGTTCTCATGTCATCTTGCACTGTTCAGTTTGTCGTTCTCTTGCTGTATCACAGGCACTGTTTTTGATACTGTTTAGACTAGACTGTGAAGTCTTGTCTCTTAGGTGCAAATGTGCAATTCATATCTGATACATATAACTAGTTTTGTGTCAGATTGCaggtttgtttttcattatagcagtttgttaatgtttgtttttacatcTGCAGAGTTTATTCAACCTAACACGTCTTAATAAGGGATTATTCAAATAAGAATgttaattgtattttatttttacacctAGTGCAAgagcaaatgtgttttggaCATTCAAGTAAAATACATGAGAAGTAATCTATTAGTTTCATTAGGCCCAGACTGTTTTATTAGATTGTATTTGAAAGGAcagtataaattatatataatctaattgtgtgtgtgtgtgtgtgtgagtgtgagtgtgagagagagtgagtgtgtgataCAGAAGATTTGGGACAACTCATAGGGATGAAAGTATTATGTTGCATTAttgttgcaaaaaaacaaactaggCCTGTTTATAGCTGGGATAAAAGTTACAGAATTGCTGCAGGAGTTTGTTTGTGCAAGCTCAAACAAAGTGAACAACAAGAAAACCACACTGAATTTATTCCTGGACATGTATTTGAAGAACTCTTTTAACACAACTCGGCACATACTGTACGGCCTGTTACTCTACTGATCTCTCTGCATTTACAGTTTTCACATTGTCCCTTTTCTTACACTTTTTGTATGGCaacatattgtttattttactctggaaataaattatttttcagaaaataaa

Function

symbol description
slco3a1 Predicted to enable sodium-independent organic anion transmembrane transporter activity. Predicted to be involved in prostaglandin transport and sodium-independent organic anion transport. Predicted to act upstream of or within ion transport and transmembrane transport. Predicted to be located in plasma membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Is expressed in several structures, including female organism; gill; liver; pleuroperitoneal region; and skeletal muscle. Orthologous to human SLCO3A1 (solute carrier organic anion transporter family member 3A1).

NR:

description
PREDICTED: solute carrier organic anion transporter family member 3A1

GO:

id name namespace
GO:0006810 transport biological_process
GO:0016020 membrane cellular_component
GO:0005215 transporter activity molecular_function

KEGG:

id description
K14353 SLCO3A; solute carrier organic anion transporter family, member 3A

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039808991.1 True 4140 mRNA 0.48 10 16213775 16254088

Neighbor

gene id symbol gene type direction distance location
nr2f2 nr2f2,LOC107388818,LOC100705923,LOC108230091,LOC102227842,LOC104957255,LOC106930729,LOC105023478,LOC106573769 coding downstream 401776 15802424 ~ 15811999 (-)
pgpep1l LOC103364746 coding downstream 750061 15456807 ~ 15463714 (-)
cd9a NA coding downstream 895930 15310877 ~ 15317845 (-)
syt1b syt1,LOC100710649,LOC102779835,LOC103358504 coding downstream 909495 15298687 ~ 15304280 (-)
otogl otogl,LOC102779350 coding downstream 921813 15262486 ~ 15291962 (-)
LOC120563512 LOC104964038,LOC103375536,LOC102794895 coding upstream 126855 16380943 ~ 16409443 (-)
zgc:162879 LOC104964034,LOC103368560,LOC100692867 coding upstream 197945 16452033 ~ 16461232 (-)
sema4ba sema4b,LOC103368553,LOC100693140,LOC101470126 coding upstream 208467 16462555 ~ 16549024 (-)
LOC120563779 NA coding upstream 275354 16529442 ~ 16532441 (-)
idh2 idh2,LOC104917827,LOC105932345,LOC107100590,LOC103147849,LOC103466626 coding upstream 327420 16581508 ~ 16594186 (-)
LOC120563424 NA non-coding downstream 165534 15858841 ~ 16048241 (-)
G85125 NA non-coding downstream 740918 15466582 ~ 15472857 (-)
G85121 LOC103364747,LOC103358513 non-coding downstream 754862 15455655 ~ 15458913 (-)
LOC120563610 NA non-coding downstream 757221 15455840 ~ 15456554 (-)
LOC120563611 NA non-coding downstream 758261 15453209 ~ 15455514 (-)
G85250 NA non-coding upstream 3887 16257975 ~ 16258235 (-)
G85253 LOC104921699,LOC103367513,LOC104941665,LOC101473242 non-coding upstream 21563 16275651 ~ 16277412 (-)
G85312 NA non-coding upstream 116913 16371001 ~ 16372919 (-)
G85319 NA non-coding upstream 207474 16461562 ~ 16462518 (-)
G85328 NA non-coding upstream 274519 16528607 ~ 16528849 (-)
st8sia2 fam174b,st8sia2,LOC100690985,LOC101474125,LOC102798331 other downstream 4589 16188853 ~ 16209186 (-)
chd2 chd2 other downstream 26439 16155984 ~ 16187336 (-)
G85133 mef2a,mef2aa,LOC107553916 other downstream 669693 15514778 ~ 15544082 (-)
ttc23 LOC104957250 other downstream 729630 15472934 ~ 15484145 (-)
G85014 ppp6r2,LOC103370604 other downstream 1140425 15066039 ~ 15073350 (-)
G85321 NA other upstream 185286 16439374 ~ 16440965 (-)
LOC120563869 frmd5,LOC104917831,LOC102299895,LOC106561170 other upstream 443007 16697095 ~ 16763718 (-)
trnah-gug_10 NA other upstream 510627 16764715 ~ 16764786 (-)
G85435 NA other upstream 553968 16808056 ~ 16808416 (-)
fbxl22 fbxl22 other upstream 1371923 17626011 ~ 17645520 (-)

Expression


Co-expression Network