zgc:101540 (LOC100694233,LOC102305394,LOC102779799,LOC101472508,LOC102208223)


Basic Information

Item Value
gene id zgc:101540
gene name LOC100694233,LOC102305394,LOC102779799,LOC101472508,LOC102208223
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053119.1
NCBI id CM020916.1
chromosome length 42187026
location 19537502 ~ 19547183 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039809013.1
TGGGTGAACTTTGTCACAAATTGTGTTTAACTGACTTGCATAACAACATCCACCACTGCCTCTCAGTGACAGATGCGTCCTGCTGCCTAGTGCGCTCTGCAAAATGTACATCTGCTTCACCGTTATAGCCGGACTGGCTATTCTGTCCTTCTTCTTTCTCAGGACACGTTTCCCTTACTTAGGCGAGGACTGCGCCTACATCCTGAGGAGCATTAAACTCGGCTTCAGGCTCATCAAGTACAAGAAAGTCAAACCTTTTTACAGCGTCTTGGACTGCTTCTTGGATGCAGCGAAGAGGCATCCCAGTAAGATCTTTCTGCACTTTGAAGGACGAGAATATACTTATGGAGAAGTGGATAAACTGAGCAACAAGGTAGCCAGAGCTCTGCAGGCTGAAGCCCGGCTGAAGGAGGGGGACGTGGTCGCCTTGTTTCTGGCCAACGAGCCCAGTTTCGTGTGGACTTGGCTCGGTTTGGCCAAGCTGGGCTGCCCGGCTGCTCTACTCAACTTTAACATCAGATCCAAGTCTCTGTTGCACTGTTTCTCCTGCTGCGGGGCCAAAGTGATCATCGCCTCTTCAGagctgcaggatgctgtggagGAGGTTTTACCCACACTGATAGAGCAAGGCATCAGTGTGTACCTCCTGTCAGAGGCCTGCAGCATTCAGGACATCAACACTTTGTCTGACAAGATCTCCCAGGCCTCAGATCAGCCGCTGTCCCGGGACCTCAGAGCCAACGTCAACATCAGGAGCACTGCTCTGTACATCTACACGTCGGGCACTACAGGTTTGCCTAAAGCAGCTGTTGTCACCCAGGAGAGGGTTTGGGCCGCCTCCTTCATCCAAGCGGCATGTGGAATCACATCAGAGGACATCTTCTACGTCAATCTGCCTCTCTATCACAGTGCAGGCTTTCTCATCGGGATGGTCGGATCCATCGAGAGAGGTAATACCATTGTTCTGAAGAGAAAGTTCTCTGCCTCTCAGTTCTGGAGCGACTGCAGGAAGTACAATGTGACCGTGATGCAGTACATCGGTGAAACAATGCGCTACCTCTGCAACACGCCCAAGAAAGACAACGAGAAGAACCACAGAGTAAAGATCGCCATCGGGAATGGAGTCCGGACGGATATTTGGTCGGAGTTTCTGAATCGCTTCGGGGACATTAAAGTTAGAGAGTTGTACGCGGCCACAGAGGGAAACATTGGCTTTATCAATTACACGTCCAAGATCGGTGCAGTGGGGCGGGTCAATTTTGTCCACAGGTTTTTCTTCCCATTTACTTTGATCAAGTTTGACATTGAGAAGGAGGAGCCGGTCAGGAACTCTGAGGGTTTGTGCATCGAGGCAGCCAGAGGTGAGACGGGACTTTTGGTGGGGAAGGTTACTCAGAGGTCTCCCTTTGTTGGGTACGCTGGCAACCAGCaacagacagagaagaagaggcTTCGTGACGTGTTGAAAAAAGGCGACCTCTACTTCAACACTGGAGATTTGCTTCGGTTTGATCACATGAACTTTGTGTACTTTCAGGATCGAGTCGGTGACACTTTCAGATGGAAAGGAGAAAACGTTGCCACATCGGAGGTTGCAGACATTCTCACAATGGCTCCTTGCATTTTGGAGGCAAATGTCTACGGTGTTAAAGTTGAAGGTCATGAGGGGCGGATCGGCATGGCAGCTGTCCTTTTGAAAGAAGGAGAAGATTTTGACTGTTTGCAGACCTACAAGCAGGTCGTCAACTACCTCCCAGCGTACGCAAGACCTCGATTTATCAGGATTCAGCCCTGCCTGGAGATGACGGGGACATTCAAGATGAAGAAAGTGAAGTTGGTGGAGGAGGGATTCAACCCAGCTCACATGGAAGATCCTTTATACTTTTTAGATACTGAGAAAAAGACGTACATTCCCCTGACTGAGGACATCTACAGAGCGATCGCTTGCAGGGAAATAAAACTCTAACACAGAAACGTTAGTACTCAGAAATGAACTAGACGACCCGTTTGTTTACACAGATGTAACATGTCATTCATGTGGACCTTTTGTAATAGTCAACTAATCTCAGGGACAGACTGACTTTGAAACGTTACGTCATGTTTTAAGAGCCTTTTTTAATTAACACAACTACCTttgcttttacagtttttgtaaaTGTATTCCATAATGCTGACAATATATGCTATACAGGCATGTCTTACTGCCTCTGTTGTCCTTTTAATAATTAAACTCTGGttgtcttttttcccccctga

Function

NR:

description
very long-chain acyl-CoA synthetase-like

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0003824 catalytic activity molecular_function

KEGG:

id description
K08746 SLC27A2, FACVL1, FATP2; solute carrier family 27 (fatty acid transporter), member 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039809013.1 True 2256 mRNA 0.48 10 19537502 19547183

Neighbor

gene id symbol gene type direction distance location
duox2 duoxa2 coding downstream 100846 19434249 ~ 19436656 (-)
fan1 fan1 coding downstream 114280 19417626 ~ 19423222 (-)
LOC120564004 LOC103363835,LOC104931412,LOC104960084 coding downstream 121565 19397238 ~ 19415937 (-)
LOC120564015 rfx7,LOC100694937 coding downstream 179258 19341610 ~ 19358244 (-)
LOC120564050 LOC104931415,LOC103363123,LOC104960120 coding downstream 198387 19323799 ~ 19339115 (-)
LOC120564200 NA coding upstream 1879 19549062 ~ 19557179 (-)
atp8b4 atp8b4 coding upstream 34604 19581787 ~ 19598362 (-)
parp16 parp16 coding upstream 76482 19623665 ~ 19629890 (-)
trnap-agg_7 NA coding upstream 135663 19682846 ~ 19682917 (-)
LOC120563845 LOC103375932,LOC108230170,LOC106526839 coding upstream 152971 19700154 ~ 19707127 (-)
G86432 NA non-coding downstream 5880 19530576 ~ 19531622 (-)
G86430 NA non-coding downstream 10365 19525687 ~ 19527137 (-)
G86400 LOC101161482 non-coding downstream 153495 19383619 ~ 19384007 (-)
G86395 NA non-coding downstream 162563 19371007 ~ 19374939 (-)
G86394 NA non-coding downstream 168446 19368759 ~ 19369056 (-)
G86519 NA non-coding upstream 977 19548160 ~ 19548961 (-)
G86529 sqrdl non-coding upstream 54298 19601481 ~ 19603243 (-)
G86517 NA non-coding upstream 62222 19609405 ~ 19618046 (-)
G86540 LOC103375930 non-coding upstream 127740 19674923 ~ 19679089 (-)
G86543 LOC104950121,LOC106908881,LOC103380454 non-coding upstream 147812 19694995 ~ 19695815 (-)
G86402 LOC103363837 other downstream 148927 19387822 ~ 19388575 (-)
arpp19b arpp19,LOC100693429,LOC102791975,LOC106919339,LOC101065895 other downstream 220024 19315385 ~ 19317478 (-)
LOC120564082 svip other downstream 377015 19156758 ~ 19160487 (-)
G86194 tph1 other downstream 526586 19007196 ~ 19010916 (-)
syt7a LOC102215913,LOC101470916,LOC102782335,LOC103466506,LOC103141308,LOC107388681,LOC100690092 other downstream 841404 18614588 ~ 18696098 (-)
cep152 cep152,LOC104960117 other upstream 10269 19557452 ~ 19573688 (-)
G86638 NA other upstream 705456 20252639 ~ 20259259 (-)
LOC120564033 LOC103358331,LOC102195670 other upstream 1259699 20806882 ~ 20829235 (-)
LOC120563850 NA other upstream 1330485 20877668 ~ 20887626 (-)
dnajb9a dnajb9,LOC100706374,LOC102775779,LOC102215328 other upstream 1822348 21369531 ~ 21372509 (-)

Expression


Co-expression Network