afg3l1 (LOC100701252,LOC102294241,LOC102199323)


Basic Information

Item Value
gene id afg3l1
gene name LOC100701252,LOC102294241,LOC102199323
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053119.1
NCBI id CM020916.1
chromosome length 42187026
location 4984680 ~ 5004204 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039809085.1
CCTCCCGTTGACATTTCACCATAGCATGTCACACCACCGTTGCTCTTATTCAATAACACTTATCGGTGCAACGCGATGAAGTTCAGGAGAGGAAATTAAACCAAACGTTGTGTGTTTTGGACTGAAAGACTTGGCACGCGGCACGGGGGAGGATGTCTCAGCTGCTGAGGCTTCTCTCGGCGGCCGCCCTGCCTCTCTGCCGGGCTGGAGGAGCCCGGGCTCGGCTGTCTGCGGTAACGGCACGACGGCTCTTCACAGCCGGATACCGAAGCTCTGTAGCCCCGAATGGCTGTCGGACTCCGGCCGACTTCTTCTCCTGTCGCAGATTCCAGTCAGCTCAGCGGCGGCTGTACTCCACTGAGCCCAAAGATGGAAAAGGAGGAGCggccggaggaggaggaggaggaggagcagccggaggaggaggaggaagatccTCAGGtggagggaagagaggaggaaaagactGGTGGAGCCGAATGCAAAAGggTGACTTCCCCTGGGACGAGAAGGATTTCCGTTACCTGGCGATCACCGTGGCCGGCGCCAGTTCGGCGCTGCTGTATTTCTACTTCAGAGACAACGGCCGAGAGATCAGCTGGAAGGACTTCGTCCACCGCTACGTGGGCCGGGGCATGGTGGAGCGGTTGGAGGTCGTCAACAAACAGTACGTCCGAGTCATCCTGGTGCCGGGCGCCGACGCCGACGCGAGCTACGTTTGGTTCAACATCGGCAGCGTGGACACGTTTGAGAGGAACCTGGAGGCGGCGCAGCTGGAGCTCGGCCTGGAGCCCTCCCACCGACCAGCGGTGGTCTACAGCACCGAGAGCGACGGCTCTTTCCTGATGAGCATGATACCGACCCTGCTGCTGATCAGCTTCCTGCTCTTCACTCTGCGGCGAGGACCAATGGGAGGAGGCCCCGGCGGCGGGAGGGGCGGGCCCTTCAGCATGAGCGAGTCGACGGCGAAGATGATGAAGGACAACATCGAGGTGAAGTTCAAGGACGTGGCCGGCTGCGAGGAGGCCAAGCTGGAGATCCTGGAGTTCGTCAACTTCCTGAAGAACCCAAAACAGTACCAGGACCTCGGGGCCAAGATCCCCAAGGGCGCCGTGCTGTCCGGACCCCCCGGGACGGGGAAGACTCTGCTGGCCAAAGCTACCGCCGGAGAGGCCAACGTCCCCTTCATCACCGTCAACGGCTCCGAGTTCCTCGAGATGTTTGTGGGCGTCGGCCCGGCCAGGGTGAGGGACATGTTCGCCATGGCGAGGAAGAACGCCCCCTGCATCCTCTTCATCGACGAGATCGACGCCGTcgggaggaagaggggaggcGGGAACTTTGGCGGTCAGAGCGAACAGGAGAACACGCTGAACCAGCTGCTGGTGGAGATGGACGGTTTTAACACGGCGACTAACGTGGTGGTTCTGGCCGGAACCAACAGACCCGACATCCTGGATCCTGCACTGATGAGACCGGGACGCTTCGACCGACAGATCTACATAGGTCCGCCCGACATTAAGGGCAGAGCGTCCATCTTTAAAGTCCACCTGCGTCCGATCAAACTGGACCCCAACATGGACAAAGACTTTCTCGCCAGGAAGATGGCTGCTGCCACGCCGGGATTCACCGGAGCCGACATCGCCAACGTCTGCAACGAGGCGGCGCTGATCGCCGCCCGACATCTGAACACGTCCGTCAACGGGAAACACTTCGAACAGGCCATCGACCGCGTCATCGGAGGTCTGGAGAAGAAGACTCAGGTGCTGCAGCCGTCAGAGAAGAAGACGGTAGCGTACCACGAGGCGGGCCACGCCATCGTGGGCTGGTTCCTGCAGCATGCCGACCCGCTGCTGAAGgtgTCGATCATCCCGCGGGGGAAGGGCCTGGGCTACGCTCAGTACCTGCCCAGAGAGCAGTACCTGTACAGCAAGGAGCAGCTGTTCGACAGGATGTGCATGATGCTCGGAGGCCGCGTGGCCGAGCAGGTCTTCTTCGGCAAGATCACCACCGGAGCTCAGGACGACCTGAAGAAGATCACGCAGTCCGCCTACGCTCAGGTGGTGCAGTTTGGGATGAGCGAGAAGGTGGGGCAGGTGTCGTTCGACCTGCCCCGGCAGGGCGAGATGGTGCTGGAGAAGCCGTACAGCGAGGCCACGTCGGAGCTGATCGACCAGGAGGTCCGGGAGCTGGTGGAGCGGGCGTACCAGAGAACCCTGGAGCTCATCCaggacaagaaggagctggtggAGATGGTGGGGAAGCGTCTCCTGGAGAAGGAGGTCCTGGACAAGGCGGACATGTTGGAGCTGCTGGGCCCGCGGCCGTTCGAGGAGAAGTCGACGTACGAGGAGTTTGTGGAGGGGACCGGCAGCTTCGAGGAGGACACCAGCCTGCCGGAGGGACTCAAAGACTGGAaccaggagagaggagggggggaggcgGAGGACGCGGGACCAGCTCCGGACAAACAGCTGGCCGCGTAGAGACGCCAGGCCGGGACACTCGGATAAGAAACGAacgctgcagaaaaaaaa

Function

NR:

description
PREDICTED: AFG3-like protein 1

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005524 ATP binding molecular_function
GO:0004222 metalloendopeptidase activity molecular_function
GO:0017111 nucleoside-triphosphatase activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K08956 AFG3; AFG3 family protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039809085.1 True 2537 mRNA 0.62 16 4984680 5004204

Neighbor

gene id symbol gene type direction distance location
LOC120564251 LOC103357242 coding downstream 59374 4912293 ~ 4925306 (-)
zgc:172145 NA coding downstream 294151 4681350 ~ 4690529 (-)
LOC120564256 myod1,LOC104930627 coding downstream 307310 4668482 ~ 4677370 (-)
prr33 NA coding downstream 354697 4618326 ~ 4629983 (-)
LOC120564250 NA coding downstream 856923 4125627 ~ 4127757 (-)
LOC120564005 NA coding upstream 164282 5168486 ~ 5222677 (-)
rfwd3 rfwd3 coding upstream 227340 5231544 ~ 5258261 (-)
LOC120564558 NA coding upstream 259265 5263469 ~ 5283349 (-)
LOC120564561 NA coding upstream 288576 5292780 ~ 5307882 (-)
LOC120563745 NA coding upstream 407022 5411226 ~ 5417693 (-)
G82572 NA non-coding downstream 124740 4859256 ~ 4859940 (-)
G82560 NA non-coding downstream 196217 4788259 ~ 4788463 (-)
G82554 NA non-coding downstream 219011 4758149 ~ 4765669 (-)
G82378 NA non-coding downstream 275200 4709143 ~ 4709480 (-)
G82377 NA non-coding downstream 278077 4706279 ~ 4706603 (-)
G82593 NA non-coding upstream 8589 5012793 ~ 5013762 (-)
G82592 NA non-coding upstream 10186 5014390 ~ 5047680 (-)
G82595 NA non-coding upstream 83258 5087462 ~ 5087728 (-)
G82599 NA non-coding upstream 126571 5130775 ~ 5131097 (-)
G82600 NA non-coding upstream 126992 5131196 ~ 5132217 (-)
G82246 NA other downstream 706321 4276820 ~ 4278359 (-)
LOC120564247 NA other downstream 816894 4076378 ~ 4167786 (-)
G82147 NA other downstream 1406296 3494391 ~ 3578384 (-)
G82122 NA other downstream 1604152 3380027 ~ 3380528 (-)
fem1b fem1b,LOC102786726 other downstream 1916759 3056539 ~ 3067921 (-)
urahb NA other upstream 188 5004392 ~ 5011941 (-)
faap24 LOC102781697 other upstream 473020 5477224 ~ 5483533 (-)
LOC120563994 LOC103354574,LOC102783264,LOC102204057,LOC100698332,LOC104935123,LOC102307694,LOC101486521 other upstream 2169818 7174022 ~ 7197808 (-)
G83064 LOC100699133 other upstream 2283691 7287895 ~ 7291427 (-)
met met other upstream 2734710 7738914 ~ 7832871 (-)

Expression


Co-expression Network