cnot4a (cnot4,LOC102778264)


Basic Information

Item Value
gene id cnot4a
gene name cnot4,LOC102778264
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053119.1
NCBI id CM020916.1
chromosome length 42187026
location 21263991 ~ 21276898 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039809174.1
CTCCCTCCTCCCTACTTTAATGCTAGCTAAGATGGTGGTTAGAGCGTAAATTGTCTCCACAATACCAAGAAAAGAAAGGGGCAAACCATCTTTATAGCCTTTTAATCACAACAGAACAACACAACTACGGTTATCTTAAGTGACCGGTGATATAAATTTTGGCATTTCAGATACATTGGCTCGCAGTCCCCGCCCAATTTGGTGTGACTCCCTCGGAGTGGAATCCTAAGCTAAATACGGACAGGcCCTGTGCTCTGTGACCCGCCTCAACACTCACCTTCGCCGCGCCATAGGATGTCCAACAGCCCTGAAATGAAGGACGACCCCATGGAGTGCCCTCTGTGCATGGAGCCGCTGGAGATTGATGACGTCAACTTCTTCCCCTGCACTTGTGGCTATCAGATCTGCCGCTTCTGTTGGCATCGCATCCGCACAGACGAGAACGGCCTGTGCCCCGCTTGCAGAAAGCCGTACCCAGAGGACCCTGCTGTGTACAAGCCTCTGTCACAGGAGGAGATCCAAAGGATAAAGAACgaaaagaagcagaaacagaATGAGAAGAAGCAGAAGGTGACAGAAAACCGAAAGCATCTGGCCAGTGTCAGAGTGGTCCAGAGAAACCTGGTGTTTGTGGTGGGGCTCTCACAGCGACTCGCCGACCCAGAGGTCCTAAAACGACCAGAATATTTTGGGAGGTTTGGAAAAATCCATAAAGTGGTCATCAACAATAGCACATCTTACGCAGGTTCACAGGGGCCCAGTGCCAGCGCTTATGTCACTTACATCCGCTCTGAAGATGCTTTAAGAGCAATACAGTGTGTGAACAATGTGGTTGTTGATGGAAGAACTCTCAAGGCTTCTTTAGGCACAACAAAGTACTGCAGTTACTTCCTTAAAAGTATGCAGTGTCCCAAACCTGATTGTATGTATCTACATGAGCTGGGGGATGAAGCCGCTAGCTTTACTAAAGAGGAGATGCAGGCGGGCAAACATCAAGAGTATGAGCAGAAACTCCTCCAAGACCTCTATAAAATTAACCCTAGCTTTCTACAACCTCCAACATGTGGAACAGAGAAGTTAAAGAGTAAATCCAGCTCCACACAGAGAACCAACGGTAGCAACGGTAAAGATGGGTGGCCGACGCTGTCGGGACACAACAAACTGGCCAACGGGCTTTCAGAGGACCGCAAGTCTCCTCCGCTGCTAGACTACCTAGACCAAGAAGTTCTTACTTCAGATGGGCTAGAAACAGACCTGGGTCCTGGTCAGCATACTGTGCTGTCTCCTTTCTCCTCTAACTGTGACAGTAACAGTCCCAGTGATAAACCTCCAGATTCAATTGGTATGGTGAATGGAGAGACTGTACAACAGATCCCCACCAGTGACTCCCCTTCTCCCCCCCCGGGTTTAACCAAGCCCAGCTTGGTGGTGCCTATCAGCGTGTCAGACCTCACAGCCCGTTCACCCTTCGAGGGAGCGGCAGCGGAGTCCCAGTCGCTCTTTTCAGACAACAGTAACTTCAGACACCCTAACCCTCTCCCCGCTGGCCTGCCGCCCTTCCCCAGCTCCCCCCGCAGCAATTCTGACTGGCCCATGACGCCTGAACCACAGAGCCTCTTCACATCAGACACAATACCAGTGTCTTCTTCCACAGACTGGCAGGCGGCCTTTGGCTTCGGCTCGTCTAGCAAACAGCAGGACGACGATCTGGGCTTCGATCCTTTCGACGTCACTCGCAAGGCCTTGGCCGACCTGATAGAGAAGGAGCTGTCAGTGCAGGACCAGAGCCCCTTGTCCCCGGGGCTCCTCTCCCATGGTGGGCTCAACCATGGTCCCGGCCTGCCTCCTCTCAACCCTAACCCCAGCTCCTCTCACCACTTCCCCAGCGGCCTGCCGCGCCTCCCCCAGCTCCACCACAGAGCTATCTACAGCTCCTTCAGTTTTCCCGGCAGTCAGAACAGCCAGGCCAATCAGCAGCAGCCATCCGCCAGACACCCCTGGATGGGCGTCCCGACACGAAATAACCTCACACACTTGAACCACTCAGCCAGTGCTGCCTCACACAGTAATTTCCTGGACCTGAATCTGCCCCCTCAGCACAATACAGGGCTGGGAGGGATCCCCATCTCAGAAAACAGTGGCTCTATAGACGGCTTAAATGTGAAAGAGTGGCAGGATGGCCTGAGAGCTCTCCTGCCCAACATCAATATCAACTTCGGGGGCCTCCCaaactcctcttcctcttcatcctcctcatcctccaacAGTGTTAACCACATCGGTGGGCCGGTGGGGCCAGCAGGCCTCTCACACAGCCTGAGCTGGGACGGCACAGCCAGTTGGATGGACCCTGCTATCATCACAGGCATCCCAGCCTCAGCAGGCAACAGTTTAGACTGTCTCCAGGACGACAACCCACCCCACTGGCTCAAGTCCCTGCAGGCGCTCACAGAGATGGACGGCCCGGCCAGCTCAGCGGTGCCCACTCCTCCCCAGCCCCTCCACAGCGGCCTTCTCGACGCCCACCTCCCCCTCCACCACAGAGCCGCCGGCGGCTGGGCTCCCTACCTGCCCCCTCCCACAGCCAACCCCGCCAGCCAGTTCCACTCCCCTCCCCCAGGCTTCCAGACAGCCTTCAGACCCCCGGGACAGCCCACCACAGAGCTGCTACAGAGTGCCGCTGTGGACCGCCACTGAACACAGACTACAGCAGACACCCATCCATTCCCCCACTACCACTTTATACCCACTCATCCTGtaccccgccccccccccccccctcccctcaatGCAATACACACCAATCTGCAGAGTATGAAAAATTATTAACAAAGTAACAAAcatgctttcttctttttctcttcctccttcctttttGTCTAATCCGAAGgcctatttgtttttgtttgtggcaCACAAGTTATCGGTACCCTTCATCTGCTCCCATCACCACTCCTTAGAACTAGTTCTGGGCGTAACATGGGATTCATCTGTGTTCTCACTGTTAACGGAGAGCACAAGAAACAGAATAGCATTGAGCCCCCAGTGGTGACAGTAAGTAATAACTCCACAACTGGCGACGAAACAAATTAGCTGAAGgaagatcttttttttaaaagtaactaatGATTAAGCATGAACAACATTGTGTTTTTGAAAGTTGAAGTCACGATTAGTTTTGTCGAGGAATGAAGCAAGCTGTGAATCTGCTCTTGAAGCTTTGCCCCAAAGACCCTCATCCTCCCCACTTTACAGGAGACTGTGAAGCGGTTAACCCTTACAGCTGAGTTGTGAACACGGcgagctgagagagagagagcgaaaaAGGGGTTGGCACTTAGCTTTTTTTGAGagtggttttaaaaaataaaaaaaaaagttataaaaaggggcTGAGATTTGGTTATCAGCGAGTGAATGCAGATGACACAGGGGAGTTGAGGGCACAGGCTATGCATGGGCTCCCTGTTAGGTAGGGACACAGATGGCCTGCTTGAGAGGCCGCTTGGCCCACATTCCCTTTAGTGGAGGGCTCCCTGGACTGGCCCCATCCTGCTGGAGGGAAAATTTTGCTGAACCTCTGTATCAGAGGGTAGAGCACTGCCTAACCACGGGGCGCCAGGGCTTTGGGAGATTGTGGCCAAAATCCTGAGAACTAGGGTTAGACTCTTACTCACAGTGCCACTGTGTGGTACCTACAGTAGCTAGCCCTAACACGGAGAGCCACCAAGTAGATACGACAATGACTGGATGGATGAGGATATGTCAAAAAACTAAAGAGGGTAGCAACAGGGTTAAAAGGTCCCTTTGTTCGACCCACGAGGGCTTAAACGAGGCCTTAACATGGACAGATGAGAGAAAGGAGCTCAAGTGAGTGGAGGGGGAGTCTAGCATCAGTGATTGCTAAAAAATATGCAATATTGCATATGACTTGAACCACTGTATGTTATTGCGTGTCCCAAAGGAAGGTGCTGCAAGACAATACCAAGTACTGTAGTAGTGATATAAGGGGCTCTCAGCCTTTAGGGTATGAGATGGACCTCCGACCACCGCCTTTATTCTTTTTGAAGTCTTAATTCTGATCCATGTtcgctctgtctttctctctctcttacccACCCCACCCCTCCTGCTGTTCCCTATTTAACAGTATTTCACAAAAATGAACAAACTCATCCAGGAGAAACCAACACCGAGTCATACAGTGGGTTTTAACATGATGTTGcgcgaaaaaaacaaaaacaaaattgagGCGCTTAAAGGAAGTGAACTGTCCTCTGCAGGTCTGGAAAAATGAAccttaaataaaactgaaaactcAGA

Function

symbol description
cnot4 Enables ubiquitin-protein transferase activity. Involved in protein autoubiquitination; regulation of megakaryocyte differentiation; and ubiquitin-dependent protein catabolic process. Colocalizes with CCR4-NOT complex.

NR:

description
PREDICTED: CCR4-NOT transcription complex subunit 4

GO:

id name namespace
GO:0000166 nucleotide binding molecular_function
GO:0003723 RNA binding molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K10643 CNOT4, NOT4, MOT2; CCR4-NOT transcription complex subunit 4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039809174.1 True 4323 mRNA 0.51 13 21263991 21276898

Neighbor

gene id symbol gene type direction distance location
tmpob LOC103366874,LOC102305331 coding downstream 74384 21185466 ~ 21189607 (-)
LOC120564647 LOC103366875,LOC101162597,LOC101469130,LOC102779886,LOC103134408 coding downstream 80108 21175590 ~ 21183883 (-)
slc35b4 slc35b4,LOC102781124 coding downstream 98325 21160351 ~ 21165666 (-)
LOC120564432 LOC103371976 coding downstream 105487 21151500 ~ 21158504 (-)
LOC120564685 net1,LOC103371968,LOC102297003 coding downstream 129772 21120429 ~ 21134219 (-)
zgc:136858 LOC104946800 coding upstream 561 21277459 ~ 21284740 (-)
LOC120563940 NA coding upstream 7475 21284373 ~ 21297599 (-)
dnm1l dnm1l coding upstream 78682 21355580 ~ 21368976 (-)
LOC120564741 LOC104962548,LOC102797891,LOC101479938,LOC102194218,LOC102291278 coding upstream 449188 21726086 ~ 21734094 (-)
prickle1a prickle1,LOC104925408,LOC104962552 coding upstream 488784 21765682 ~ 21793881 (-)
G87030 LOC103366871,LOC104946806,LOC106525492,LOC108230167 non-coding downstream 12232 21245010 ~ 21251759 (-)
LOC120563411 NA non-coding downstream 117478 21140507 ~ 21146513 (-)
G86976 NA non-coding downstream 160612 21102630 ~ 21103379 (-)
G86853 NA non-coding downstream 355401 20908389 ~ 20908590 (-)
G86761 NA non-coding downstream 564354 20698815 ~ 20699637 (-)
G87107 nrcam,LOC101067328 non-coding upstream 185807 21462705 ~ 21466246 (-)
G87120 NA non-coding upstream 209634 21486532 ~ 21512528 (-)
G87123 cntn1 non-coding upstream 269760 21546658 ~ 21549859 (-)
G87148 NA non-coding upstream 448025 21724923 ~ 21725658 (-)
G87232 NA non-coding upstream 728601 22005499 ~ 22008395 (-)
LOC120563850 NA other downstream 376365 20877668 ~ 20887626 (-)
LOC120564033 LOC103358331,LOC102195670 other downstream 434756 20806882 ~ 20829235 (-)
G86638 NA other downstream 1004732 20252639 ~ 20259259 (-)
cep152 cep152,LOC104960117 other downstream 1690303 19557452 ~ 19573688 (-)
G86402 LOC103363837 other downstream 1875416 19387822 ~ 19388575 (-)
dnajb9a dnajb9,LOC100706374,LOC102775779,LOC102215328 other upstream 92633 21369531 ~ 21372509 (-)
G87140 NA other upstream 436144 21713042 ~ 21713554 (-)
LOC120564778 LOC103358851,LOC101480430,LOC100706913,LOC102797593 other upstream 458108 21735006 ~ 21739344 (-)
LOC120564428 NA other upstream 1070272 22347170 ~ 22366978 (-)
parvg parvg other upstream 1412263 22689161 ~ 22706296 (-)

Expression


Co-expression Network