scamp2 (LOC103379909,LOC103364404,LOC104932119)


Basic Information

Item Value
gene id scamp2
gene name LOC103379909,LOC103364404,LOC104932119
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053119.1
NCBI id CM020916.1
chromosome length 42187026
location 10643916 ~ 10662678 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039809213.1
CGCCTGCGCTGTACTTTCATTCGAGGAAGTGGTAGAAGAGGCAACTCAAACGACGTAGAAGAGTTTGTTGCTTATTCCCTGTTCAGAGAGGACAAACCGGCCCGCAGCCTTTTCAAAATGTCGGGATTTGATAGCAACCCGTTCGCAGAGCCTGCCAACGACAACCCTTTcaatGACCCTTCGGTCACACAAGTGACCACCTCCAACATAGAGCCAGTGGACCAGTACAACCCTTTCCCTGCCCATCCCACAGACAACCTAGCTTCTCATACCACTCCAGCCTCCACCGCTCCCTACCAGCCTGCTGTGTTACAGCCGTCTACAGAGCCCAGTCCGCAGgcgactgctgctgcagctcagGCCAATCTGCTGAGGCAGCAGGAAGAGCTGGAGAGAAAAGCTGccgagctggaccgcagagagCAGGAGATACAGAGCAGAGGCCCCACAGGTAAAGAGAACAACTGGCCTCCACTTCCCAAGAGCTTCCCAATTAAACCATGTTTCTATCAGGACTTCTCAGAAGAAATCCCCCCAGAGTCCCAGAGAGTCTGCAAGATGATATACTATCTCTGGATGTTCAACTGTGTGACTCTGTTCCTCAACCTGCTGGCCTGTTTGGCCTTCTTCACTACTGAAACGTCCTATGGTGTGGATTTTGGTCTCTCCATTCTCTGGCTCATCCTCTTTGCTCCCTGTTCCTTCCTCTGCTGGTACCGGCCTATCTACAAGGCCTTCAAGACTGACAGctccttcagcttcttcttcttcttctttgtgtttttctgccaAGTGGTGATCTTCATCATCCAGTCTGTAGGCATCCCCAAGTGGGGCAACAGTGGTTGGATCACTGCCTTCACTGCCATGAGTACAAACAAAGCCGTGGGAGCCATCATGATTATAGTGGCCATCCTCTTCACCATCTGCGCTGTGCTGTCAGTCATCCTGCTCAAGATGGTCCACAGCATATACCGCCGGACCGGGGCCAGTTTCCACATGGCGCAGCAGGAATTCTCGCAGGGCGTCTTCACCAGTAGAACCTTCCAAACAGCTGCTGCTGGAGCAGCATCCTCCGCTGCACAGGGAGCCTTCCAGAGAAACTAACTAATGGAAGACCGAGAGAAGCTCCATTTAACAGGTCATGGTCTATATGTTATCAGGTCTAGAtgattcagtaaaaaaaaaaaaaaaagggtaaaatGAATCAGGAA
>XR_005640086.1
CGCCTGCGCTGTACTTTCATTCGAGGAAGTGGTAGAAGAGGCAACTCAAACGACGTAGAAGAGTTTGTTGCTTATTCCCTGTTCAGAGAGGACAAACCGGCCCGCAGCCTTTTCAAAATGTCGGGATTTGATAGCAACCCGTTCGCAGAGCCTGCCAACGACAACCCTTTcaatGACCCTTCGGTCACACAAGTGACCACCTCCAACATAGAGCCAGTGGACCAGTACAACCCTTTCCCTGCCCATCCCACAGACAACCTAGCTTCTCATACCACTCCAGCCTCCACCGCTCCCTACCAGCCTGCTGTGTTACAGCCGTCTACAGAGCCCAGTCCGCAGgcgactgctgctgcagctcagGCCAATCTGCTGAGGCAGCAGGAAGAGCTGGAGAGAAAAGCTGccgagctggaccgcagagagCAGGAGATACAGAGCAGAGGCCCCACAGGTAAAGAGAACAACTGGCCTCCACTTCCCAAGAGCTTCCCAATTAAACCATGTTTCTATCAGGACTTCTCAGAAGAAATCCCCCCAGAGTCCCAGAGAGTCTGCAAGATGATATACTATCTCTGGATGTTCAACTGTGTGACTCTGTTCCTCAACCTGCTGGCCTGTTTGGCCTTCTTCACTACTGAAACGTCCTATGGTGTGGATTTTGGTCTCTCCATTCTCTGGCTCATCCTCTTTGCTCCCTGTTCCTTCCTCTGCTGGTACCGGCCTATCTACAAGGCCTTCAAGACTGACAGctccttcagcttcttcttcttcttctttgtgtttttctgccaAGTGGTGATCTTCATCATCCAGTCTGTAGGCATCCCCAAGTGGGGCAACAGACTTTTCATCCTTCAGCCTCTAGCctgctgcctctctgtctgctgGTTACTCTTGGTTGGATCACTGCCTTCACTGCCATGAGTACAAACAAAGCCGTGGGAGCCATCATGATTATAGTGGCCATCCTCTTCACCATCTGCGCTGTGCTGTCAGTCATCCTGCTCAAGATGGTCCACAGCATATACCGCCGGACCGGGGCCAGTTTCCACATGGCGCAGCAGGAATTCTCGCAGGGCGTCTTCACCAGTAGAACCTTCCAAACAGCTGCTGCTGGAGCAGCATCCTCCGCTGCACAGGGAGCCTTCCAG

Function

NR:

description
secretory carrier-associated membrane protein 2-like

GO:

id name namespace
GO:0015031 protein transport biological_process
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K19995 SCAMP; secretory carrier-associated membrane protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039809213.1 True 1214 mRNA 0.51 9 10643916 10662678
XR_005640086.1 False 1151 transcript 0.53 10 10644032 10662678

Neighbor

gene id symbol gene type direction distance location
map1ab map1a,LOC101157288,LOC107093210 coding downstream 11131 10546775 ~ 10632785 (-)
acanb NA coding downstream 176242 10449340 ~ 10467674 (-)
LOC120564668 abhd2 coding downstream 246476 10386325 ~ 10397440 (-)
tdg.1 tdg,LOC103366448 coding downstream 470574 10166324 ~ 10173342 (-)
si:dkey-10o6.2 LOC104921785,LOC100704824,LOC102313177,LOC101482952,LOC102782089,LOC102213179 coding downstream 494810 10141783 ~ 10149106 (-)
trex4 LOC104932121 coding upstream 21175 10683853 ~ 10686618 (-)
LOC120563355 NA coding upstream 31206 10693884 ~ 10705324 (-)
LOC120564602 NA coding upstream 54487 10717165 ~ 10879648 (-)
ppib ppib coding upstream 267290 10929968 ~ 10934791 (-)
adpgk adpgk coding upstream 273026 10935704 ~ 10946782 (-)
G83854 NA non-coding downstream 103255 10537831 ~ 10540661 (-)
G83819 NA non-coding downstream 271737 10368773 ~ 10372179 (-)
G83786 pdia3,LOC100304813 non-coding downstream 276034 10361594 ~ 10367882 (-)
G83784 pdia3 non-coding downstream 282509 10359835 ~ 10361407 (-)
G83781 LOC106535632,LOC105926242,LOC107092206,LOC107388379,LOC103366310,LOC106927940 non-coding downstream 289507 10350483 ~ 10354409 (-)
G83911 NA non-coding upstream 261825 10924503 ~ 10925018 (-)
G83941 NA non-coding upstream 348184 11010862 ~ 11011238 (-)
G83942 NA non-coding upstream 348620 11011298 ~ 11012402 (-)
G83974 NA non-coding upstream 398389 11061067 ~ 11061304 (-)
G84050 NA non-coding upstream 707721 11370399 ~ 11370649 (-)
G83826 mfge8,LOC104961859 other downstream 211772 10389244 ~ 10432144 (-)
tdg.2 LOC104948407,LOC103366417 other downstream 463915 10174471 ~ 10180001 (-)
pik3c2a pik3c2a,LOC102781015 other downstream 513959 10078071 ~ 10129957 (-)
ppp1r15b LOC104921782,LOC104967023,LOC106964268,LOC103156571,LOC103465711,LOC102222546 other downstream 571406 10067916 ~ 10072510 (-)
LOC120563773 LOC102779219 other downstream 593382 9894777 ~ 10050534 (-)
LOC120564603 NA other upstream 43541 10706219 ~ 10714845 (-)
oaz2a oaz2,LOC104929548,LOC101470759,LOC102200097,LOC106531198 other upstream 160608 10823286 ~ 10913217 (-)
ptpn9a ptpn9 other upstream 510875 11173553 ~ 11260961 (-)
G84083 NA other upstream 1225349 11888027 ~ 11888398 (-)
G84123 cat,LOC102293651,LOC102204975,LOC102775586,LOC102293936 other upstream 1478845 12141523 ~ 12144546 (-)

Expression


Co-expression Network