taf3 (taf3,LOC103371965)


Basic Information

Item Value
gene id taf3
gene name taf3,LOC103371965
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053119.1
NCBI id CM020916.1
chromosome length 42187026
location 21062518 ~ 21071325 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039809222.1
CTGATTTGTGCGCATGTGCGACGAGGATGGGTCTATCGATGGAATCAAGATGGCGACTCTGGCGAAAGCGCCAATATATTTACTGAAGTAGATGTCCCAAATTAACCGCGTTAGCGGGTTTTCTCAAGCCCCTAAGGGGTTCCGTGAAACATGAAGACTGGGAGTATGTTTTGGAAGAGGAACTGACCGGGATTAATACCGTAACAAAGTCAGCGAGATGTGCGAGAGCTATGCCCGCTCGCTGCTGCGTGTTTCGGTGGCGCAGATCTGCCAGGCTCTGGGCTGGGATGCGGTTCAGCTCACTGCGTGCGATCAGCTGTCCGATGTGCTGCATCGATATATCCAGCAGTTGGCCAGGGTCTGCCATCGGTACTCTGAGCTCTATGGAAGAACAGATCCAGTCCTGGATGATGTCAGCCAGGCTTTCAGACTGCTGGGGGTGAGTCTGAGTGAACTGGAGGATTACGTCCACAACCTAGAGCCTGTGCCCTTCGCCCAACAAACGCCGCTCTTTCCTGTCAGCAAAAACAACGTCCTGCAGTTTCCCCAGCCTGGAGCCCGAGATGCAGAGGAAAGGAAGGATTACATTCCAGATCACATGCCACCCCTGGTCTCCTTACAAGAAGaagaggaggaggaagaagtcCTTGCTGACATGGGCACCTCAGCCGAAGCTATGCAGGTGGCACtggaagaggatgaggaggaaatGGACGAAGATGAGACGGTCAACGATGAGAACCATCCACTGAAGAGGCACCTGGACAGTCCTGATGCCGCTATGGGCATGATGCCTACCTCCAAGAGACCACGCATGTACCCTGGCCTCAGCCCAGAATGGGGGGTTGAACCCAGGGAGCCCCTTACCTCTCTCAACCCTCAACGTGTTCCTCCAGGTATGCTGCCCTCTCATGATAGCCTTGACCCCCTGTCACCTGAAACACCTTCTGGAGCCCTGCCTTCCTTCAGACCTCAGCCGGTAGTACCAAAACACTCTGATCAAAAGGGCCTCAACACTCCAGGAAGAAAGCCTAAGGTCTCATCCCCTGGCAGACAACGGACTAAGTCCCCTAAAGGGGTTATTCCTGTTCCGGTGGGTGGTAGTCCCATCCATTCTCCAAAACCGTctaaggaaaagaagaaatcCCCAGGGAGGACGAAGAGTCCTAAAAGCCCCAAGAGCCCAAAGGTGGGTTCAGCCAAAGCATCCCAACCGCAGAGCAAGACCGATCTTGTGCATAAGCTACCGCTGTCTGCGCTGAGTGAGCGGATGGGCAAAGAGAACATCCATATGCGTCAAAATATAGAGGACCGGGAGTTAGCTGAGGGCCCTTTCAAGAAACTAGAGCCTGATAATGCAGCCATCGATGACTCCATTGATGCTGTGATTGCCAGAGCTTGTGCTGAGCGGGAGCCTGATCCTTTTGCTTTCTCTTCGGGTTCTGATTCAGATAGCAATGGATTCTCCAGCCCCAGGAGGCTGACCATAATGGAACCGTCTACACCTAAACTCTTGATTGGGGGAAGCATCTCTGTAAAAGACACATCAACACCACTTCACctacaggcacacacaggccTAGGAAATTGGACTATGGATGATTCCATCAATGAGGTGATCCGAAAGGTCAACCAGGGGGGTCCGTCCGCTCCCCCACCGAACCAAGGAGACTGTGTCTCATCAGGATCGGCCTCCCCACCTACTCCTGAACCTTTACTCAAGGTGTTTGAGGAGAAGAACAAGATTGTGTCATCAGTAGATGTCAAGAAAAAGCTGAAGAAGGAGCTCAAAACTAAaatgaagaagaaggagaaagacaAGCCGAAAGACAAAGACCGAGAAAAGGATAAGGGCAAGCTGAAAGAGAAGAACAAGGATAAGAACAGGGATAAAAACAAGGACTTTTCCAAGGATGGCAAGATGCCCTGGAAAGAGTTTGGAGTGAAGGATGATGAGCACTTCCTTCAGCGAGACTTTACTCTGCCTGAGGGCTCCATCAAGATAAAAACCAGAGATGGAGATGGACctaagaaggagaaggagaaacacaaagacaaaaagaaggataaagaaaaaagtaaaaaggacAAAGATAAGAGGGACAAGGGTAAAGACAGGAGCAAGGACGACAGGCAGAAGCAATCTGCGTTAGCCCCCTTTGCTCTGGGTGAAATCCCACAACTGTTCAGCCCCTCTGCCTGCCTGCGCATCCCCTCCATGCTTCCTCCTTTGGCCCCGATCCTCCAGGATAAGGACATAAAGAGCAAGGAGAAGGACAAGAAGAAAGAcaagaaggagaaaaagaaaaagaaggacaAGGAGAAGGATAAGGATAAGGAGCGAGAGAAGGccaaagaaaaggagagggagaaagaagagaagcggaaagaaaaggagagggaaaaggaaaaacgagaaaaggagaaagaaaaagagagaattcGATTGGAGAAgGTGAAAGTAGAAACTCCAGCAGCTCTACCATCTCCAGTCATCCCCAGACTGACGCTCAGGGTGGGGGCAGGCCAGGACAAAATTGTTATCAGCAAGGTGGTTCCAAATTCAGAGCCCAAGACGCCAGCACCCAAGACCCCAGCGGCCAAGTCTGGACCTGGGAATCGCCCTCGGACGCCCCCACCAACCCCAGTACTCTGCCCAGTCGTACCCACTCTGCCCCCAGCTCCCTCTCCACTTCCACCAGCGCCTGCCCCTTCATCGTTGCTCTCCCCTGGCCCTATGCTCTCTCCCGCTGCATCCTTCAAAACACCGGTCCGCAGCGTAGTAACTGAGACTGTCAGTACCTATGTGATCCGAGATGAATGGGGTAACCAGATCTGGATTTGTCCTGGATGTAACAAAGCTGATGATGGCAGTCCCATGATAGGATGTGATGACTGTGATGATTGGTATCATTGGCCTTGTGTTGGGATCCTTACAGCCCCTCCTGAGGATCAGCAGTGGTTCTGTGTTAAATGTTCCAGTAAGAAGAAGgacaaaaaacacaagaaaaggAAACACAAACTGCATTGAGACTATGCAAAAAAGCACATATTTTGGACTTTTTTGGACTTGAAGCCATCACTGAACACTCGTGGCactgctgtaaaataaaaaaagaaagtttaaaATTGTGGCTGATACTAACATctgatgatttttttaatgatgTCAGCCATCATGCATTGTGAGTTGGTAAGAAAAAAGGCTTAAACCAGCACATATCCAGCCTTAGTTCTCATGTGGTTTTTCCTTTTCACCTGTAAATTGTTTACTTGTTGATTTGGATGTCCGGTCTTTGGAGATCATGACAATTATGTTTGTATAAGGAGACCATGACAATTTGTCCAAGATGAGAGCTCAACAAAGCAGAGAACCAGAGAACAACTAACATCCATTGTCTTTATTTCTGTTCTGTGGCCGTTTCTTTTGTGGCAACACAAAATGAATGACCGCCAAGTCAAACCTTAACCCCAGTTTTCTGCAGTATCATTGAAATGTCATGTATATAATGATGATGGCATCAGGTGTGTATAAATGTGTCAATACCAACTTCCAAGCCAAGTACATTTTGTTCTTAGGTATTCTGACTTGTTAAATCCATTTTCAGATATTTTAACGCAAATGATTTTCTGTAATTTctgtacattttttaaatttaaagtttgtatttttattttttcttcatatgGATTTGTCCTGGAGTTAATACTGTAGCTGTGCTTGTTATGTAATTCATTTCGCTGATATTTCAATATTAAAGATGAACAGTCTGTGTACTCACAGACTTTAAGATGTAAATCTCATTACCATCAAAATTCTACCTGACATTTAACCACTTCTGTGCAtccttattttgtttttaacctGGACAGACATATCTACATTTTTTCCAGTAgctgattggttgtgtttgctTGAAAAAATAGAATAGATTGGAAATATTTTAACAAACCAGTGTTGAATTTTGAGCCTGCTAATTTCAGACAGTGTGCAGTTGGTTACAAATCAAATCCAAGATCCTCTCTTGCAGCAGTCTGTGCAATGCATTAGCCTAGATTTGGGACTATTCTGCTGAGTTGTCATCCTGCACTTCACCTACGTGAGATATGTGGTGGAGTGCTTGGCAGTCACTTTGCACAGGGTTGCGTTTCCAAAGATTGATTGTGGATTGTGCGCTTTTCTCTTAGAATTGTGTCTGACAATGTCTCCTGTGCCATTTGCAGCAGAgttgtttttgcttttccccTCAATGACCACATGGTGTCATTCTTTATGCACAGACACTGTAGCATGCTGCTCATGACATGTACAGACACCACGGCATGCTTACAAAAAAACAGCTCACAAACCCCGTTATGAATGTAAGAAATGTGACAGGTAGCTTAATTGATGCATGTGGAATCCTTATCTTGCAAGTAAAACCAGCTCCAGAAGTGCCATCATTCATGGAAGGACCCATAGACTGGAAATAGGATTTATACCCTTCCAGAAGACTTAGAGTTCTATAGAAGAGAATGTGAGATTGTAAATTGTGTGTCCCCATTTATCAGTGGAATATAATTTTGTGTGGGGCAGGTTTTGCATGTTTGATCTAACCTTTTCCATTCTTTGAAGTCAAGTGCTGTTTTGCAACTGTTATATCTATAGCAGAAGGTTTTATTACCAGTCAAGTCTGACTTCACATTTTGAACTCTGAAAGGTTTAGATGTTTATCAGATTCTCTGTGCTTTTATTCATTTCTGGGAACAGTCAGTGCTGGCTGGACCTCAGAAATCTACTCAGTTGATATTATAGCatatcagaaatgtattttggtgcaAAACCATTCAATAATTTATAAGCCGTAGCAGTACTTTAAAATCAATTATTTGACAGAGTGGTGCATTGTTCTGAATGAGCTGTCAGAGAGCTCATAGGAAAACCTGAGAAAAGCTCATTAAAGTGATTCAACCTTC

Function

symbol description
taf3 Enables transcription cis-regulatory region binding activity. Acts upstream of or within hemopoiesis and regulation of muscle organ development. Predicted to be part of transcription factor TFIID complex. Orthologous to human TAF3 (TATA-box binding protein associated factor 3).

NR:

description
PREDICTED: transcription initiation factor TFIID subunit 3

GO:

id name namespace
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K14650 TAF3; transcription initiation factor TFIID subunit 3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039809222.1 True 4956 mRNA 0.46 7 21062518 21071325

Neighbor

gene id symbol gene type direction distance location
LOC120563607 celf2,LOC104940643 coding downstream 2984 21026854 ~ 21059534 (-)
dhtkd1 dhtkd1,LOC102784200 coding downstream 37972 21004383 ~ 21024546 (-)
camk1db LOC104963721,LOC101175563,LOC105938601,LOC102229393,LOC106946080 coding downstream 60124 20982554 ~ 21002394 (-)
LOC120564353 cdk17,LOC106573057 coding downstream 89352 20940954 ~ 20973166 (-)
hal hal,LOC102785645 coding downstream 131442 20919230 ~ 20931076 (-)
tasor2 NA coding upstream 1741 21073066 ~ 21098386 (-)
LOC120564685 net1,LOC103371968,LOC102297003 coding upstream 49104 21120429 ~ 21134219 (-)
LOC120564432 LOC103371976 coding upstream 80175 21151500 ~ 21158504 (-)
slc35b4 slc35b4,LOC102781124 coding upstream 89026 21160351 ~ 21165666 (-)
LOC120564647 LOC103366875,LOC101162597,LOC101469130,LOC102779886,LOC103134408 coding upstream 104265 21175590 ~ 21183883 (-)
G86853 NA non-coding downstream 153928 20908389 ~ 20908590 (-)
G86761 NA non-coding downstream 362881 20698815 ~ 20699637 (-)
G86686 NA non-coding downstream 600695 20402744 ~ 20461823 (-)
G86660 NA non-coding downstream 798312 20250890 ~ 20264206 (-)
G86652 reln non-coding downstream 820668 20241433 ~ 20241850 (-)
G86976 NA non-coding upstream 31305 21102630 ~ 21103379 (-)
LOC120563411 NA non-coding upstream 69182 21140507 ~ 21146513 (-)
G87030 LOC103366871,LOC104946806,LOC106525492,LOC108230167 non-coding upstream 173685 21245010 ~ 21251759 (-)
G87107 nrcam,LOC101067328 non-coding upstream 391380 21462705 ~ 21466246 (-)
G87120 NA non-coding upstream 415207 21486532 ~ 21512528 (-)
LOC120563850 NA other downstream 174892 20877668 ~ 20887626 (-)
LOC120564033 LOC103358331,LOC102195670 other downstream 233283 20806882 ~ 20829235 (-)
G86638 NA other downstream 803259 20252639 ~ 20259259 (-)
cep152 cep152,LOC104960117 other downstream 1488830 19557452 ~ 19573688 (-)
G86402 LOC103363837 other downstream 1673943 19387822 ~ 19388575 (-)
dnajb9a dnajb9,LOC100706374,LOC102775779,LOC102215328 other upstream 298206 21369531 ~ 21372509 (-)
G87140 NA other upstream 641717 21713042 ~ 21713554 (-)
LOC120564778 LOC103358851,LOC101480430,LOC100706913,LOC102797593 other upstream 663681 21735006 ~ 21739344 (-)
LOC120564428 NA other upstream 1275845 22347170 ~ 22366978 (-)
parvg parvg other upstream 1617836 22689161 ~ 22706296 (-)

Expression


Co-expression Network