tdg.1 (tdg,LOC103366448)


Basic Information

Item Value
gene id tdg.1
gene name tdg,LOC103366448
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053119.1
NCBI id CM020916.1
chromosome length 42187026
location 10166324 ~ 10173342 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039809225.1
GTTGACCGGCAGGGCTGTCATGTCTTTGTTGCCTCTGTTGCACCTCATATGTTGTGAATAGAAGAACGGGATAGATGGAAACATAACAGTCATATGTACAGAAGAAACTAATTTAAACCTTACCCACAACAGTCAAACCACCCAAAAGATGGAAGACAAGCTGAATGGATTCCCTGTTGTCTCCCCGGAGTATCTTCAACAGTGGGTTCAGTCTGCACAGCAGTTTCAAGCTCTCCAGGCCCAATATTCAGGCTTCAACCACAATCATCAGTCTCACTATCCGGAGGAGCTGCCAGGAGAGACAGCCATGGCACACATGGGTTATCCAGAACCCATGATGGATCAGCAGGAACCAGCCAACCTGGCAAAACCCCCAGCCAAAAAGAGAGGCAGACCAGCTCAACCCAAGGAACCCAAGGCTCCCAAACCACCAAAAGTCCCCAAGGCACCAAAGCCACCTAAGGACCCAAATGCACCTAAAGCCAAACCTGGTCCTAAGCCCAAGAAGGCCACTGAGGCTCAGGCAGATGGCAAGCAAGAGAAGATTGATGAGAGCTTCAAGAAGGTTAAGAGGAAAATTGACCGCTTCAAGGGAATGTCAGAGGAGgaagtcatgacaaaaactctACCAGACCTGCTGGAATACAACCTGGACTATGTCATTATTGGTATTAATCCAGGACTGATGGCAGCTTTCATTGGACGGTGGTTTCCAGGCCCTGGAAATCATTTTTGGAAGTGCCTGTTTCTGTCTGGATTTACTGAGGAGCAACTCAACCATATGCATGACACCACTCTGCCTGTCAAATACAAAATGGGCTTCACCAACATGGTGGCCAGGGCGACACCAGGGAGCAAAGACCTCTCAAGTAAAGAGTTGCGTGAAGGTGGCAAAATTCTTGTagagaagctgaagaaattcaaGCCTCTAATTGCTGTTTTTAATGGAAAATgCATCTATGAAATGTTCTGCAGAGAGATGTTTGGTAAAAAACCAAAGAAACTTGATTTTGGTTTGCAGCCACACAAGATCCCCGACTGTGACGTGGCCCTGTATCTGATGCCTTCGTCCAGCGCTCGTTGTGCTCAGTTCCCTCGTGCTCAGGACAAAGTCCACTTCTACATCAAACTGAGGGAGCTCCGAGATGAGCTAAAGGGTCTCCAAAAAAGTACTGAGATCGAGGAGGTTGACTACAGGTTTGACCTGAAATTGGCTAAGGAGGATGCCAAGAGGATGGCGATAAAGGAGGAGCAGTACGATCCTGGTTATGAAGATGCCTACGGTGGAGCATATGCAGAGGGTCCAGCCCAAAGCCAGACAAACGGTCACTGTACATTCTCAAATGTAGAAAACGCAGAAGGAGCACAGGAGGCGACCACGTCACAAATACCAGGCCAGCTCCCAGACGGACAGTGGATGACCCAGTCCTTTGCAGACGAGATCCCAGACATCAGCGGTGGAGCAAAGGATGGCAGCGTATGAGGAAAAGACTTATTTTGTCGGGTTTTTAgatctttttcctttttaatagtGTCCAAGTGGAATATACACCCATAGATggactttttgttttgtttttagaggTTTTGCAGAATATTCTTTCtgcactttttattttgtttgtggtCTTGATGACCATCTTCATGGCAGTCTTTTTAAATATGTGAAATCAGGGACTTGACAATGATGCTCGACTGTGCTTGGGGAAGGTCATGTATTTAAAcgtttgtttttgcctttgtactgtactgtactgcacTGTCATGCAGTAAGTGTATACCTTCACGTCTACTGTTTTGACAGTAGCTAATACTCAACTCCAGATGGTTATTTAATAAGCTTGATTGATCCGTGTGAAGCCTGTATGATCCTCTGTGAATTGAGGCTTTAGCTAGCAAATAATGTTTTACATTCATGGTGCTATGAACTGACCACGATGCAAAGTGATCACTCGATGAAACCAGACTCGTCGTGTACGATTGAGGTTCCACAGAGGGAATTCCTGGCACGCCTTTCAATATAATGTTACAAAACTCAAACAGGttatattttaatcttttatcATCACGTTTTTTGATTTTAGGAATTGTAGaattatgttttgtatgtttatgAAAATGTCATTCACAAGGAATTTTACGAAACATTGGTCCATTAAAATGCCTTGATGATG
>XM_039809226.1
GTTGACCGGCAGGGCTGTCATGTCTTTGTTGCCTCTGTTGCACCTCATATGTTGTGAATAGAAGAACGGGATAGATGGAAACATAACAGTCATATGTACAGAAGAAACTAATTTAAACCTTACCCACAACAGGGTTCAGTCTGCACAGCAGTTTCAAGCTCTCCAGGCCCAATATTCAGGCTTCAACCACAATCATCAGTCTCACTATCCGGAGGAGCTGCCAGGAGAGACAGCCATGGCACACATGGGTTATCCAGAACCCATGATGGATCAGCAGGAACCAGCCAACCTGGCAAAACCCCCAGCCAAAAAGAGAGGCAGACCAGCTCAACCCAAGGAACCCAAGGCTCCCAAACCACCAAAAGTCCCCAAGGCACCAAAGCCACCTAAGGACCCAAATGCACCTAAAGCCAAACCTGGTCCTAAGCCCAAGAAGGCCACTGAGGCTCAGGCAGATGGCAAGCAAGAGAAGATTGATGAGAGCTTCAAGAAGGTTAAGAGGAAAATTGACCGCTTCAAGGGAATGTCAGAGGAGgaagtcatgacaaaaactctACCAGACCTGCTGGAATACAACCTGGACTATGTCATTATTGGTATTAATCCAGGACTGATGGCAGCTTTCATTGGACGGTGGTTTCCAGGCCCTGGAAATCATTTTTGGAAGTGCCTGTTTCTGTCTGGATTTACTGAGGAGCAACTCAACCATATGCATGACACCACTCTGCCTGTCAAATACAAAATGGGCTTCACCAACATGGTGGCCAGGGCGACACCAGGGAGCAAAGACCTCTCAAGTAAAGAGTTGCGTGAAGGTGGCAAAATTCTTGTagagaagctgaagaaattcaaGCCTCTAATTGCTGTTTTTAATGGAAAATgCATCTATGAAATGTTCTGCAGAGAGATGTTTGGTAAAAAACCAAAGAAACTTGATTTTGGTTTGCAGCCACACAAGATCCCCGACTGTGACGTGGCCCTGTATCTGATGCCTTCGTCCAGCGCTCGTTGTGCTCAGTTCCCTCGTGCTCAGGACAAAGTCCACTTCTACATCAAACTGAGGGAGCTCCGAGATGAGCTAAAGGGTCTCCAAAAAAGTACTGAGATCGAGGAGGTTGACTACAGGTTTGACCTGAAATTGGCTAAGGAGGATGCCAAGAGGATGGCGATAAAGGAGGAGCAGTACGATCCTGGTTATGAAGATGCCTACGGTGGAGCATATGCAGAGGGTCCAGCCCAAAGCCAGACAAACGGTCACTGTACATTCTCAAATGTAGAAAACGCAGAAGGAGCACAGGAGGCGACCACGTCACAAATACCAGGCCAGCTCCCAGACGGACAGTGGATGACCCAGTCCTTTGCAGACGAGATCCCAGACATCAGCGGTGGAGCAAAGGATGGCAGCGTATGAGGAAAAGACTTATTTTGTCGGGTTTTTAgatctttttcctttttaatagtGTCCAAGTGGAATATACACCCATAGATggactttttgttttgtttttagaggTTTTGCAGAATATTCTTTCtgcactttttattttgtttgtggtCTTGATGACCATCTTCATGGCAGTCTTTTTAAATATGTGAAATCAGGGACTTGACAATGATGCTCGACTGTGCTTGGGGAAGGTCATGTATTTAAAcgtttgtttttgcctttgtactgtactgtactgcacTGTCATGCAGTAAGTGTATACCTTCACGTCTACTGTTTTGACAGTAGCTAATACTCAACTCCAGATGGTTATTTAATAAGCTTGATTGATCCGTGTGAAGCCTGTATGATCCTCTGTGAATTGAGGCTTTAGCTAGCAAATAATGTTTTACATTCATGGTGCTATGAACTGACCACGATGCAAAGTGATCACTCGATGAAACCAGACTCGTCGTGTACGATTGAGGTTCCACAGAGGGAATTCCTGGCACGCCTTTCAATATAATGTTACAAAACTCAAACAGGttatattttaatcttttatcATCACGTTTTTTGATTTTAGGAATTGTAGaattatgttttgtatgtttatgAAAATGTCATTCACAAGGAATTTTACGAAACATTGGTCCATTAAAATGCCTTGATGATG

Function

symbol description
tdg Enables several functions, including G/U mismatch-specific uracil-DNA glycosylase activity; anion binding activity; and metal ion binding activity. Involved in base-excision repair, AP site formation; mismatch repair; and regulation of DNA N-glycosylase activity. Located in nucleoplasm and plasma membrane.

NR:

description
PREDICTED: G/T mismatch-specific thymine DNA glycosylase-like isoform X1

GO:

id name namespace
GO:0006281 DNA repair biological_process
GO:0016799 hydrolase activity, hydrolyzing N-glycosyl compounds molecular_function

KEGG:

id description
K20813 TDG; thymine-DNA glycosylase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039809225.1 True 2174 mRNA 0.45 11 10166324 10173342
XM_039809226.1 False 2102 mRNA 0.44 10 10166324 10173342

Neighbor

gene id symbol gene type direction distance location
si:dkey-10o6.2 LOC104921785,LOC100704824,LOC102313177,LOC101482952,LOC102782089,LOC102213179 coding downstream 17218 10141783 ~ 10149106 (-)
rps13 rps13,LOC107586033,LOC107700620 coding downstream 89360 10072964 ~ 10076964 (-)
LOC120564824 NA coding downstream 92902 10073293 ~ 10073422 (-)
LOC120563691 NA coding downstream 285734 9765862 ~ 9880590 (-)
psma1 psma1 coding downstream 585872 9576588 ~ 9580452 (-)
LOC120564668 abhd2 coding upstream 212983 10386325 ~ 10397440 (-)
acanb NA coding upstream 275998 10449340 ~ 10467674 (-)
map1ab map1a,LOC101157288,LOC107093210 coding upstream 373433 10546775 ~ 10632785 (-)
trex4 LOC104932121 coding upstream 510511 10683853 ~ 10686618 (-)
LOC120563355 NA coding upstream 520542 10693884 ~ 10705324 (-)
G83669 nucb2 non-coding downstream 31579 10132747 ~ 10134745 (-)
G83613 NA non-coding downstream 273569 9891384 ~ 9892755 (-)
G83610 NA non-coding downstream 277652 9888444 ~ 9888672 (-)
G83609 LOC107690399,LOC105905572,LOC104946089 non-coding downstream 279358 9882235 ~ 9886966 (-)
G83606 NA non-coding downstream 385210 9780635 ~ 9781114 (-)
G83699 NA non-coding upstream 10894 10184236 ~ 10184640 (-)
G83703 LOC103379807,LOC105006114,LOC103366387,LOC101079219 non-coding upstream 16477 10189819 ~ 10191806 (-)
G83744 api5 non-coding upstream 29389 10202731 ~ 10204403 (-)
G83746 NA non-coding upstream 42061 10215403 ~ 10277798 (-)
G83759 NA non-coding upstream 117454 10290796 ~ 10294507 (-)
pik3c2a pik3c2a,LOC102781015 other downstream 36367 10078071 ~ 10129957 (-)
ppp1r15b LOC104921782,LOC104967023,LOC106964268,LOC103156571,LOC103465711,LOC102222546 other downstream 93814 10067916 ~ 10072510 (-)
LOC120563773 LOC102779219 other downstream 115790 9894777 ~ 10050534 (-)
LOC120564711 NA other downstream 614905 9542670 ~ 9551419 (-)
cav1 cav1 other downstream 2305096 7848065 ~ 7861228 (-)
tdg.2 LOC104948407,LOC103366417 other upstream 1129 10174471 ~ 10180001 (-)
G83826 mfge8,LOC104961859 other upstream 215902 10389244 ~ 10432144 (-)
scamp2 LOC103379909,LOC103364404,LOC104932119 other upstream 470574 10643916 ~ 10662678 (-)
LOC120564603 NA other upstream 532877 10706219 ~ 10714845 (-)
oaz2a oaz2,LOC104929548,LOC101470759,LOC102200097,LOC106531198 other upstream 649944 10823286 ~ 10913217 (-)

Expression


Co-expression Network