cry1b (LOC103363998,LOC102799801,LOC100703716)


Basic Information

Item Value
gene id cry1b
gene name LOC103363998,LOC102799801,LOC100703716
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053119.1
NCBI id CM020916.1
chromosome length 42187026
location 27229826 ~ 27240938 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039809245.1
TGATGTTGTCTTGCTCTTGCGTGTCAGACGGGTTTACCACACAGAGATTCACCAGGCGTTACAATTTACATACAATGTTTAACGTGTTAGTGAGGTTAAGCGCGCGTTAACTTTGTAGACTATCACTACAAACCGGAAATATTTTCTACTTTTTGCGAGATAGCTTGTGTTTCACCGCTTCGTGCGACAGCTTACGCAAATATCAAAACAATTTAGACATCGCTGCTGGCCTCCTCCTCGGAACGCAATTCCGTTAAATGTGTTTACTTAATCGTTGTTACTAATCAAGACAAGAATTGTGCCGTTTTTCTCGCGTCTGCTGTGGGTACCTGGCCTCTGTCACACATGCAGCCGCTGGCGAGGAGACTCAACTCTGTGGATACATTTATGGAGCAAGGTTTATCCACTGACCAGGTTAAAAGCGTCTTCGTTCTCGGACGTGAATGGACATTTGACTATTTTGTTACCTAAACAACGCAAGAGGAcgtctttttgttgtttttaagaaccccccccccctccgctTTTTCTAACCTCCGCCGGGGATAGTAAAGAAGACAGGCGACATGGTGGTCAACACCATCCACTGGTTTAGGAAGGGACTGCGGCTGCACGACAACCCGTCTCTACGGGACTCTATCCGGGATGCGGACACCCTGCGCTGCGTTTACATCCTGGACCCCTGGTTCGCAGGGTCCTCCAACGTGGGCATCAACAGATGGAGGTTTTTGTTGCAATGCTTAGAGGACTTGGATGCCAGCCTGCGCAAACTCAACTCCCGCTTGTTTGTCATCAGAGGCCAGCCTACAGATGTCTTCCCTCGGATGTTTAAGGAATGGCAGATTAACCATTTATCTTATGAGTATGACTCTGAGCCGTTTGGCAAGGAACGTGATGCTGCCATCCAAAAACTAGCCAGCGAGGCTGGGGTCGAGGTCACAGTGCGGACTGCACACACCCTGTACAATCTGGACAAGATCATAGAACTCAATGATGGTCAGTCTCCTCTTACCTACAAGCGCTTCCAGGCCCTCATTAACCGTATGGATGCTGTGGAGCTGCCTGCAGACATGATAACTTTGGATGCAATTAAAAATTGTGCCACACCCATCGGTGAACACCATGATGACAAGTTCGGGGTGCCCTCCCTGGAAGAGCTTGGTTTTAAGACAGAGGGCCTAACCACGGCAGTATGGCCAGGTGGAGAAACAGAAGCCCTCATCAGGCTAGAGCGGCATCTGGAGAGAAAGGCATGGGTGGCAAACTTTGAACGTCCACGTATGAATGCCAACTCCCTGCTATCCAGTCCCACAGGCCTCAGCCCCTACCTGCGCTTTGGATGTCTCTCCTGTCGGCTCTTCTACTTCAAACTTGATGATCTGTACAGGAAGGTCAAGAAGAACAGCACCCCACCTCTTTCCTTGTATGGCCAGCTGCTGTGGAGGGAGTTCTTCTATACGACTGCTACCAACAACCCCTGCTTTGACAAGATGGAGGGAAACCCTGTTTGTGTAGCGATCCCATGGGACCGAAACCCACAGGCGTTGGCCAAGTGGGCAGAGGGACGGACAGGCTTTCCCTGGATAGACGCCATTATGACCCAGCTGAGGCAGGAGGGGTGGATCCATCATTTGGCAAGGCACGCTGTGGCCTGCTTCCTCACCAGGGGGGACCTCTGGGTCAGCTGGGAGGAAGGCATGAAGGTGTTTGAAGAGTTGCTTATAGATGCGGACTGGAGTGTCAATGCTGGCAGCTGGATGTGGCTTTCTTGCAGTTCATTTTTCCAGCAGTTTTTCCACTGCTACTGCCCTGTGGGATTTGGACGACGCACAGACCCCAATGGGGACTACATACGGCGTTATTTGCCCATATTGAGAGGGTTTCCAGCCAAATACATCTATGATCCTTGGAATGCCCCAGAGGAAGTCCAGAAGGCAGCCAAGTGCATCATAGGAGTCCACTACCCCGGGCCCATGGTGAACCATGCTGAGGCCAGCCGGATCAACATAGAGCGGATGAAGCAAATTTACCAGCGGCTTTCCAGCTACAGAGGACTGGGCCTGCTGGCAACAGTACCTGCCAATCCCAACAACGGTGCAAATGGCAGTAATGTCAGAGGAGTCAACACGGGGACCAGTCAAGGTCCTGGAGGGTCCACTGAAGGCATCTTCAAGTACCCGTTAACATCTCGAACAGAAAGAGGACACTCCACACAGAAGCGGCGCCGTGAAGAGGTTCCAACCCAAAGCAACTGTAAATCCTGGAGAGAGAGCAAATAGTATGCAAAAGGCAGAATACAAAGGGTCCCTCTGGCAGTCTGGATCAAAGGGATGGCACTGCAGGATACCTCTCCTGCAGTGCTCTCAGCTGACACACAGTAACTGTAACTTTAACTAACAATCCATAACATTCATGGTCTCAGGATCAGAGACATCACACATCTCAGGAACAGAGGAAGGAATTCAGAGGAAATACTAATATCGAAGACAAAGAACCTTTGAACTGCAGGgtataaaagacaaaaacaattgATCTATGAAAGCTTGACATCTCAGGGTGTTGTGAGTCAATTATTGTCTTCATCTACAGTATGTCActgtaaaactgttgaaaccaCTAATCATAATCACCCTTTGTTCCCCTCAACACCCACATGAGTCAGGCCAGGACATAATTTGGGTGAAACTGTGTCATTCGGCCGATTATTAAATCAGCCAAATGTTTATCAAGGCATCAGTTCTCCTAGATAGTGAGCTGAACATTTTGCTAATGTTCGGCTTCGGTATTTCAAATGTCAAAATCTGGTTCCGATCTGAGTGATGGGAACTTAAGACACAATCCGGAGAGACTGACACAAGATGATCTGGATAACATACAGTTGTAATTTTTCTCAAAAGCAATCATCCAAACATTTCATATACTTATATTAAAGTCACACTGTCaggaattgtttgtttttttcagagtTTTAGTACATAAAATTCTGATGTGTAGTTGTAATGAATATTAGAAGCAAGACTATCAGGTTTGATAATAAAGCAGGCCTTACAAATGCCATCATACATTAACtacatatttattgtttttatttccaaCTTTTGCATATTTGGTTCTGTGGTTTCACAACTCCTATTGTAAATAATGTGTTACCAAAACTCAAAATGTTCTAAGGGCTGTACCACAAAGCGAGATTAGTGGATTAGCGAGGTATTTTGAGTCTAAAGCCAGGGTTTTCCTTGTCACAAAGGTGGCTCTCTTTAAATCTGGCTAGATTGCCGGGGTAACTTATGATGCATGACTAACCTGGTCCGGACCAGTTTTTGATTGGTTCATGTTGCTCTCACTGAATGTGTTTGTAATGTTTTCTGGTCACTTGCCCATGCTGGTTTTAAAAGAGGCTTCTATAAAtcatacaataatatatataatatattattattaactatgacattaatttGCATATGAAATGTGGTACAATTCCTTCAAACCATAACTATAccactttttatgtttttatgcttGGTCCTGATTTGGTGAAGTCCGTTTTACGCTGCTGGTATATTGCAGCTAATAGAACACCATACATACACATTAGAAAGTTGAttagtttaatttatttcaccttttattttttacaggcaAATCATGAagaacaggttcttatttaCAATGGCGGCCTGGCAAGTGACAAAGCCACTTAGGGGAAAGGAAgtctattgttttatttatcacaGATAATATTCAATCAGTAAGTACATTTAACTTTGACTAAAAACCATAGTGATTTCCATGTCTCCATTATGGGACAGTGTAAGACCTAAATGCAGTTCTTGAGTATAATGTTTAAATCTGCTGCATCGAGTTTTAAGTGTCAGAGCTGTAGAATGAGCAGAAGTCACATTAGAAATAAACGGTCAGCATTAAGAGTGCATTGAGTggtaaaaataattatatatacactTATGAATGTCATTTTCTTCCAGCATTCCTCTCCCGCCTGTTcaataaacatattctttgaaTGTTGTGCTTTTAAGTGATTTGCATAAAGAAAACTTGTACTCATGATACCTCATGCAGCTTGTccatctgatatatactgtacctaTCCACATGTAAACTacctttttatagtttttttctcaaattgtATCAATTTCTACCAATGTGTTTTCACTGAGACATTAAAGAGTTTTTTGTTAAGCAGTGTCAAAAAAGCCTATTGAGTTACTGTGACTGAAGGttgttaaacaataaaacatgagaAAGTCCA

Function

NR:

description
cryptochrome-1-like

GO: NA

KEGG:

id description
K02295 CRY; cryptochrome

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039809245.1 True 4273 mRNA 0.44 11 27229826 27240938

Neighbor

gene id symbol gene type direction distance location
si:ch73-62b13.1 LOC104935271,LOC103361117,LOC104951776 coding downstream 26901 27190915 ~ 27202925 (-)
etfbkmt etfbkmt coding downstream 86515 27135856 ~ 27143311 (-)
washc4 kiaa1033 coding downstream 151993 27061216 ~ 27077833 (-)
lrrc10 lrrc10 coding downstream 178999 27049172 ~ 27050827 (-)
fnbp4 fnbp4 coding downstream 185953 27034049 ~ 27043873 (-)
uri1 NA coding upstream 414526 27655464 ~ 27669472 (-)
LOC120564488 LOC101485419,LOC102777949,LOC104949269,LOC102291458,LOC100702099 coding upstream 432660 27673598 ~ 27675858 (-)
ccdc113 NA coding upstream 545734 27786672 ~ 27790974 (-)
tbxas1 tbxas1 coding upstream 558068 27799006 ~ 27811080 (-)
tspan33b LOC104940279,LOC100694777,LOC101482493,LOC106573176,LOC105926564 coding upstream 935864 28176802 ~ 28192660 (-)
G88305 NA non-coding downstream 59559 27169988 ~ 27170267 (-)
G88274 NA non-coding downstream 168690 27060552 ~ 27061136 (-)
G88272 cnot2,LOC104938479 non-coding downstream 172894 27055670 ~ 27056932 (-)
G88245 NA non-coding downstream 225641 27002954 ~ 27004185 (-)
LOC120563588 slc15a5 non-coding downstream 228368 27000941 ~ 27001458 (-)
G88380 panx2 non-coding upstream 116141 27357079 ~ 27358179 (-)
G88381 panx2 non-coding upstream 118858 27359796 ~ 27362901 (-)
G88391 selenoo non-coding upstream 135921 27376859 ~ 27378018 (-)
G88405 NA non-coding upstream 179499 27420437 ~ 27424635 (-)
G88467 NA non-coding upstream 458682 27699620 ~ 27699935 (-)
zgc:153031 LOC100703984,LOC102237950,LOC106523206,LOC105917737 other downstream 454 27223962 ~ 27229372 (-)
G88249 mthfs other downstream 215415 27013237 ~ 27014411 (-)
ptprjb.1 NA other downstream 537582 26653636 ~ 26692244 (-)
phrf1 NA other downstream 1582826 25630776 ~ 25647000 (-)
G87897 NA other downstream 1633065 25596353 ~ 25596761 (-)
G88379 panx2 other upstream 114034 27354972 ~ 27355776 (-)
LOC120564276 LOC103371718,LOC104949276,LOC102797857,LOC100696892 other upstream 383052 27623990 ~ 27650062 (-)
LOC120564781 NA other upstream 571307 27812245 ~ 27824961 (-)
tspan9a tspan9,LOC103365760,LOC106534164,LOC101481610,LOC108237543 other upstream 898348 28139286 ~ 28382715 (-)
G89085 NA other upstream 3481170 30722108 ~ 30722503 (-)

Expression


Co-expression Network