rpl27a (rpl27a)


Basic Information

Item Value
gene id rpl27a
gene name rpl27a
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053119.1
NCBI id CM020916.1
chromosome length 42187026
location 9506566 ~ 9511368 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039809321.1
TCTCGCACAAAACCGCGTGGATTACAAATCCCGTTCCTCTTTCAACTAGCCTCCAAGATGCCCACCAAGAAGACCAAGACCAGGAAGCTCCGAGGTCACGTCAGCCACGGACATGGTCGCATTGGCAAACACAGAAAGCATCCTGGAGGTCGTGGTAATGCTGGTGGTATGCATCACCACAGAATCAACTTTGACAAATACCATCCGGGGTACTTTGGTAAGGTGGGCATGAGACATTACCACCTGAAGAGAAACACGACCCACTGCCCCACCATCAACCTGGACAAGCTGTGGACGCTGGTGAGCGAGCAGACCAGGGTCAACTATGGCAAGAAGCCTGACGGACCTGCACCCATCATTGATGCTGTGCGCGCTgGCTACTACAAAGTTCTGGGCAAAGGCAAGCTGCCCAAGCAGCCTGTGATCGTAAAGGCCAAGTTCTTCAGCCGACGGGCTGAGGAGAAGATCAAGGAAGTGGGAGGAGCCTGTGTGCTGATGGCATAATGCTCCTGTCAGTGTGTTTTTGCAGAAATAAACTGTATAAATGGAAACTG

Function

symbol description
rpl27a Predicted to be a structural constituent of ribosome. Predicted to act upstream of or within translation. Predicted to be located in ribosome. Predicted to be part of large ribosomal subunit. Orthologous to human RPL27A (ribosomal protein L27a).

NR:

description
unnamed protein product

GO:

id name namespace
GO:0006412 translation biological_process
GO:0005840 ribosome cellular_component
GO:0003735 structural constituent of ribosome molecular_function

KEGG:

id description
K02900 RP-L27Ae, RPL27A; large subunit ribosomal protein L27Ae

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039809321.1 True 554 mRNA 0.52 5 9506566 9511368

Neighbor

gene id symbol gene type direction distance location
akip1 NA coding downstream 463 9502922 ~ 9506103 (-)
znf143b znf143,LOC102798782 coding downstream 23275 9469193 ~ 9483291 (-)
wee1 wee1 coding downstream 38563 9461000 ~ 9468003 (-)
swap70b LOC104925108,LOC103366672,LOC106529858 coding downstream 47826 9418154 ~ 9458740 (-)
admb NA coding downstream 111791 9391018 ~ 9394775 (-)
psma1 psma1 coding upstream 65220 9576588 ~ 9580452 (-)
LOC120563691 NA coding upstream 254494 9765862 ~ 9880590 (-)
rps13 rps13,LOC107586033,LOC107700620 coding upstream 561596 10072964 ~ 10076964 (-)
LOC120564824 NA coding upstream 561925 10073293 ~ 10073422 (-)
si:dkey-10o6.2 LOC104921785,LOC100704824,LOC102313177,LOC101482952,LOC102782089,LOC102213179 coding upstream 630415 10141783 ~ 10149106 (-)
G83477 NA non-coding downstream 144274 9359788 ~ 9362292 (-)
G83472 NA non-coding downstream 160981 9345176 ~ 9345585 (-)
G83471 LOC103366927 non-coding downstream 163340 9342081 ~ 9343226 (-)
G83445 NA non-coding downstream 267388 9238209 ~ 9239178 (-)
LOC120563400 NA non-coding downstream 389982 9114597 ~ 9116584 (-)
G83538 NA non-coding upstream 436 9511804 ~ 9512027 (-)
G83606 NA non-coding upstream 269267 9780635 ~ 9781114 (-)
G83609 LOC107690399,LOC105905572,LOC104946089 non-coding upstream 370867 9882235 ~ 9886966 (-)
G83610 NA non-coding upstream 377076 9888444 ~ 9888672 (-)
G83613 NA non-coding upstream 380016 9891384 ~ 9892755 (-)
cav1 cav1 other downstream 1645338 7848065 ~ 7861228 (-)
met met other downstream 1673695 7738914 ~ 7832871 (-)
G83064 LOC100699133 other downstream 2215139 7287895 ~ 7291427 (-)
LOC120563994 LOC103354574,LOC102783264,LOC102204057,LOC100698332,LOC104935123,LOC102307694,LOC101486521 other downstream 2308758 7174022 ~ 7197808 (-)
faap24 LOC102781697 other downstream 4023033 5477224 ~ 5483533 (-)
LOC120564711 NA other upstream 31302 9542670 ~ 9551419 (-)
LOC120563773 LOC102779219 other upstream 383409 9894777 ~ 10050534 (-)
ppp1r15b LOC104921782,LOC104967023,LOC106964268,LOC103156571,LOC103465711,LOC102222546 other upstream 556548 10067916 ~ 10072510 (-)
pik3c2a pik3c2a,LOC102781015 other upstream 566703 10078071 ~ 10129957 (-)
tdg.2 LOC104948407,LOC103366417 other upstream 663103 10174471 ~ 10180001 (-)

Expression


Co-expression Network