LOC120564446 (prl)


Basic Information

Item Value
gene id LOC120564446
gene name prl
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053119.1
NCBI id CM020916.1
chromosome length 42187026
location 22230931 ~ 22233599 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039809411.1
AGCTCCACTCATCTGGTTCGCCACTACAAGACAGAAACCATGGATAAGGGTAAGATGGCAAGATGACAaattaaatacatgtttttatttatatgtttttctatgttttttagTGACAACGTTTTTTCCCCTCCCCCCTCAGTTTTGTTTGCTGTTCTTACACTACTGTACGTGGAGCTTTCAATGAGGGTTGTCACTGCCCCGATCTGTGCCTATGGACAGGCTGGATGCCATGCTCCTTCCCTGGCAGATCTCTTTGAGAGGGTCATACAACAGTCTTCAAGAATGCATGGCATCTCCAGTGATCTGCACTCTGAACTTGAGCAATATTTCTTTCCCAGGAAGAACATCCTAGGAAAACACAAGTGCCACACATATGGCATACTAACACCAGACGATAAGGAGAATGCACAAAGGCTAGGGCGAGAACAACTGACAGAGGTGATCCTCAGTCTGCTGGCGGCCTGGAGTGACCCCCTGTCTCAACTCCACAGCAGCATGTCTCAGGATCAGAATCAAAACTTCAACCACCACAGCTACAGCAAGGCACTGGAGATCAGTGATATGGTGCATGAGCTGAGGGAGGGAGTGGCAATAATGGCTGAGAAGATGAAGCTATTGGGAGTGCTTGGTAACACTATGGGTTACATCTCTCCTGAGAGTTTGTTTCCCTCTTCTGCCTTTACCTTCTACAAACAAGGAGAACTCAACTCAGTGGACCATCATGATCTACTCTACTGCTTCCGCAGAGACTCCAACAAAGTCAAAAATTATCTCCGGATCCTGAAATGCACCATCCTTCCTGGACTGGACTGTTAATAGTGATAGCAAAGAGGTCTACTTTAGTATCTTCAAAATTTGGCTGGCTATAAAAGAGTCTTTGTTTCTCATTTGCTTTGAACCACACATGTTcttactgtactgtaatgtgtgtattttctgtatAGGATTGTGCGTGCCTCTTGCATTATTAGTGTTTTTAGGTAATTAAACACGTTAGGGTTTGAGCATTGAGCATGAA
>XM_039809412.1
AGCTCCACTCATCTGGTTCGCCACTACAAGACAGAAACCATGGATAAGGTTTTGTTTGCTGTTCTTACACTACTGTACGTGGAGCTTTCAATGAGGGTTGTCACTGCCCCGATCTGTGCCTATGGACAGGCTGGATGCCATGCTCCTTCCCTGGCAGATCTCTTTGAGAGGGTCATACAACAGTCTTCAAGAATGCATGGCATCTCCAGTGATCTGCACTCTGAACTTGAGCAATATTTCTTTCCCAGGAAGAACATCCTAGGAAAACACAAGTGCCACACATATGGCATACTAACACCAGACGATAAGGAGAATGCACAAAGGCTAGGGCGAGAACAACTGACAGAGGTGATCCTCAGTCTGCTGGCGGCCTGGAGTGACCCCCTGTCTCAACTCCACAGCAGCATGTCTCAGGATCAGAATCAAAACTTCAACCACCACAGCTACAGCAAGGCACTGGAGATCAGTGATATGGTGCATGAGCTGAGGGAGGGAGTGGCAATAATGGCTGAGAAGATGAAGCTATTGGGAGTGCTTGGTAACACTATGGGTTACATCTCTCCTGAGAGTTTGTTTCCCTCTTCTGCCTTTACCTTCTACAAACAAGGAGAACTCAACTCAGTGGACCATCATGATCTACTCTACTGCTTCCGCAGAGACTCCAACAAAGTCAAAAATTATCTCCGGATCCTGAAATGCACCATCCTTCCTGGACTGGACTGTTAATAGTGATAGCAAAGAGGTCTACTTTAGTATCTTCAAAATTTGGCTGGCTATAAAAGAGTCTTTGTTTCTCATTTGCTTTGAACCACACATGTTcttactgtactgtaatgtgtgtattttctgtatAGGATTGTGCGTGCCTCTTGCATTATTAGTGTTTTTAGGTAATTAAACACGTTAGGGTTTGAGCATTGAGCATGAA

Function

symbol description
prl Predicted to enable hormone activity. Acts upstream of or within ion homeostasis; multicellular organismal response to stress; and negative regulation of apoptotic process. Predicted to be located in extracellular region. Predicted to be active in extracellular space. Is expressed in adenohypophyseal placode; female organism; hypophysis; male organism; and peptide hormone secreting cell. Human ortholog(s) of this gene implicated in carotid artery disease. Orthologous to human PRL (prolactin).

NR:

description
PREDICTED: prolactin

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039809411.1 True 1021 mRNA 0.44 4 22230931 22233599
XM_039809412.1 False 928 mRNA 0.45 5 22230931 22233599

Neighbor

gene id symbol gene type direction distance location
nell2a nell2 coding downstream 19091 22091533 ~ 22211840 (-)
twf1a twf1,LOC102795415 coding downstream 201858 22013911 ~ 22029073 (-)
LOC120563465 adamts20 coding downstream 269864 21874973 ~ 21961067 (-)
prickle1a prickle1,LOC104925408,LOC104962552 coding downstream 437050 21765682 ~ 21793881 (-)
LOC120564741 LOC104962548,LOC102797891,LOC101479938,LOC102194218,LOC102291278 coding downstream 496837 21726086 ~ 21734094 (-)
szl LOC103380347,LOC103353239 coding upstream 1137 22234736 ~ 22236927 (-)
mov10l1 mov10l1 coding upstream 6466 22240065 ~ 22265797 (-)
tubgcp6 tubgcp6,LOC107089493 coding upstream 167150 22400749 ~ 22428938 (-)
plxnb2b plxnb2 coding upstream 198238 22431837 ~ 22554892 (-)
parvb parvb coding upstream 473287 22706886 ~ 22725459 (-)
G87254 NA non-coding downstream 124676 22105880 ~ 22106255 (-)
G87249 NA non-coding downstream 148393 22070958 ~ 22082538 (-)
G87232 NA non-coding downstream 222536 22005499 ~ 22008395 (-)
G87148 NA non-coding downstream 505273 21724923 ~ 21725658 (-)
G87123 cntn1 non-coding downstream 681072 21546658 ~ 21549859 (-)
G87320 nuak1 non-coding upstream 54345 22287944 ~ 22355196 (-)
G87329 appl2 non-coding upstream 154396 22387995 ~ 22390216 (-)
LOC120563633 NA non-coding upstream 343418 22577017 ~ 22682276 (-)
G87400 NA non-coding upstream 527586 22761185 ~ 22837866 (-)
G87464 NA non-coding upstream 915520 23149119 ~ 23149344 (-)
LOC120564778 LOC103358851,LOC101480430,LOC100706913,LOC102797593 other downstream 491587 21735006 ~ 21739344 (-)
G87140 NA other downstream 517377 21713042 ~ 21713554 (-)
dnajb9a dnajb9,LOC100706374,LOC102775779,LOC102215328 other downstream 858422 21369531 ~ 21372509 (-)
LOC120563850 NA other downstream 1343305 20877668 ~ 20887626 (-)
LOC120564033 LOC103358331,LOC102195670 other downstream 1401696 20806882 ~ 20829235 (-)
LOC120564428 NA other upstream 113571 22347170 ~ 22366978 (-)
parvg parvg other upstream 455562 22689161 ~ 22706296 (-)
LOC120564579 LOC103366737 other upstream 1177911 23411510 ~ 23422457 (-)
G87538 NA other upstream 1260731 23494330 ~ 23498659 (-)
G87624 LOC103358853,LOC104921025 other upstream 1505383 23738982 ~ 23741190 (-)

Expression


Co-expression Network