nr1h4 (nr1h4)


Basic Information

Item Value
gene id nr1h4
gene name nr1h4
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053119.1
NCBI id CM020916.1
chromosome length 42187026
location 12742142 ~ 12758791 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039809442.1
CATCCATTTCTCCCTGACCTCAACTAGTCACACATGCTCTCACTGGAGCCCAGACACAAGCAGCTTAATGTTCATGAGCAAATATTGATTGAGCTGTAACTCACGGCATGGATATCAGAAACAAGACTGAAAAAGAGGAAAGTTAGCGGGCAGGAATTTAACATTAACTGACTGGGAAAAGAAGTAAACAGAAACCTACCTTTACCACTACCcagtccaatctgagttttctgagTTGGTGCCCGACGACCATCCTGAATGAATGAGTGGTGCCCCGACATCAATGTGGTGGGACCAATCCCACCCAGCGATGAATTCTCTATCTCAGAGAGCCCCCACTTGTTTGATATTCTGGCAGATCAAGGAAGCCCTCTCCTGCAGGATCCCGACATCTTACCCTTCACCAGCTATCCAAGCATGCAATACCCGTGCATAGAGCCGACCATGTCTTCCACACCATACTACTCCAGTCAGAACTACTACCCACAGTACAATGGAGATGAATGGTATTCACACACGGGGATATATGAACTGAGGAAAGGACCGCTGGAGGTCAGCTTTGATGCTGAGATGGAGGATGTGTCTGCTGTGGTGCCTGCTGTGTGCAAGAGGACCCGGCACATGTCGCAGGCTGGAAGGGTCAAAGGGGAGGaactgtgtgtggtgtgtggagaCAAGGCCTCTGGATACCACTATAACGCTCTTACCTGTGAGGGATGTAAAGGTTTTTTCAGACGGAGCATAACCAAGAACGCTGTGTACAAATGCAAGAGTGGCGGAAACTGTGAGATGGACATGTACATGCGCCGAAAATGCCAGGAGTGTCGGCTAAGAAAGTGCAAGGAGATGGGCATGCTGGCTGAATTGAAGCCTTCATCACCGCTGGCAGGCCTGCTGACAGAGATCCAGTGTAAGTCTAAAAGGCTGCGGAAGAACACCAAGGCCTCCCCGGGACAGTCGACTGGAGACGAGACAGAGGGGGCGGAcaacacagacaacaaacagGTCACCTCAACCACTAAACTGTCAAAGGAAAAAGTTGAAATCACCAAAGAGCAGCAGGCGCTCGTGAAATCCATCGTAGATGCTTACAACAGACATCAAATTCCTCAAGACGTGACCAAAAAGCTGCTTCAAGAACAGTACAGCGCAGAGGAAAACTTCCTCCTATTGACAGAAATGGCAACAAATCAAGTTCAAGTTCTGGTGGAGTTTACAAAAAATATTCCAGGCTTTCTCTCTCTGGATCGTGAGGATCAGATCGCTCTGCTGAAGGGTTCGGCTGTGGAAGCCATGTTTCTACGCTCAGCTCAGGTTCTCAGCAAAAGGATGCCCAACGGATACAAGGAAGTTTTAAAGGAGAGGGTACGCAATAGTGGTATGTCAGAGGAATTCATGACACCCATGTTCAACTTTTACAAAAGCATCGATGAACTCCAAATGGTGCAGGAGGAACAGGCTCTTCTAACCGCCGTAACCATCCTGACACCAGATCGGCCTTACGTGAAGGATTATCAGGCTGTGGAGAGACTTCAGGAGACCATGCTGGTCGTGCTGAGGAAGCTGTGTGTCCTGCAACACCCACAGGACCCACAGTACTTTGCTCGTCTCCTGGGCCGTCTGACGGAGCTGAGAACACTCAACCACTACCACGCAGAGATGCTAACATCCTGGAGAATGAACGACCAAAAATTTACACCGCTGCTCTGTGAGATCTGGGATGTGCAGTGACACACCAGGAATAGCGAAGAAAGCGCTAACCTAGGGATGATAACATGAACATTTCAACTTGCAAGACAAAGTCATGGTCCAACTACAGTGCATATTTATACTGGATGATGTGAGGATGTAATGTGACCTGTTGATGGCATTAGTCATACATCAGTGAATGTATCAGTGAATGGCTGAATGGTTTGTGTTTATTCTGCTCATGGTTTTTTTTAGGGCTCACAGCATCTTCATGTCTATCTACTGTGTGAGTCAGCCAACTCAGACTGGTCTCATTGTTGAGATGTTTGAAATAGTAAGAGAGTTCTCAGTGCAAAGAGGAAACTCTTCAAGGGATGGGATTTGGCACActtctgtttactgtttaccTCAGGATAAACATCTTGAAGTCCCAATGTGATTAGCTTGACAAGTACAAACACTGAAACTTATTCAAAGCAAAGGTGCTAATAAGAAGTGTAAAGTTTAGATTACATTTAGTTTAAAAATGGctacacttattttttatttgtgaaaCTCATAGTACTTGCTACAAAGGCTACTTGCTGTAAATACACACAAGTTGTATGTTTTCAATAAATAACAAGAGTAACAGAAAAAGGTTTAGGTTGGAACATTCTTCAGAATATTTTCATACCTGTTATATTACTATTAATGAgtagacatacagacataacATCTGCTACTTGTGGAAAATAATGATTAATGTTTCTCTTTAATCTTTCTGAAACTgtctaaataaactaaactgaaatATGTTCAAATTACCccaaaacattgtaaaaatatTAATAGCTAAGGGTTTCCCTGATAAAATGTGGTCTTCCACTTCCACTATATAACCTGCAACaactaacaaaaacaatgaCTTCCTACGCCTTTTTTATGTTATGCCTATATTTAACCCTCTGCTAATATTTCATTTCAGTGGGTATCAGAACAAATGCAAATCAATTACAGGACCATAGCTGTGTTTTTGTACGTTTGGCCAATTTTCTATaattaaagaatatttaacactg
>XM_039809443.1
ATCCATTTCTCCCTGACCTCAACTAGTCACACATGCTCTCACTGGAGCCCAGACACAAGCAGCTTAATGTTCATGAGCAAATATTGATTGAGCTGTAACTCACGGCATGGATATCAGAAACAAGACTGAAAAAGAGGAAAGTTAGCGGGCAGGAATTTAACATTAACTGACTGGGAAAAGAAGTAAACAGAAACCTACCTTTACCACTACCcagtccaatctgagttttctgagTTGGTGCCCGACGACCATCCTGAATGAATGAGTGGTGCCCCGACATCAATGTGGTGGGACCAATCCCACCCAGCGATGAATTCTCTATCTCAGAGAGCCCCCACTTGTTTGATATTCTGGCAGATCAAGGAAGCCCTCTCCTGCAGGATCCCGACATCTTACCCTTCACCAGCTATCCAAGCATGCAATACCCGTGCATAGAGCCGACCATGTCTTCCACACCATACTACTCCAGTCAGAACTACTACCCACAGTACAATGGAGATGAATGGTATTCACACACGGGGATATATGAACTGAGGAAAGGACCGCTGGAGGTCAGCTTTGATGCTGAGATGGAGGATGTGTCTGCTGTGGTGCCTGCTGTGTGCAAGAGGACCCGGCACATGTCGCAGGCTGGAAGGGTCAAAGGGGAGGaactgtgtgtggtgtgtggagaCAAGGCCTCTGGATACCACTATAACGCTCTTACCTGTGAGGGATGTAAAGGTTTTTTCAGACGGAGCATAACCAAGAACGCTGTGTACAAATGCAAGAGTGGCGGAAACTGTGAGATGGACATGTACATGCGCCGAAAATGCCAGGAGTGTCGGCTAAGAAAGTGCAAGGAGATGGGCATGCTGGCTGAATGCCTGCTGACAGAGATCCAGTGTAAGTCTAAAAGGCTGCGGAAGAACACCAAGGCCTCCCCGGGACAGTCGACTGGAGACGAGACAGAGGGGGCGGAcaacacagacaacaaacagGTCACCTCAACCACTAAACTGTCAAAGGAAAAAGTTGAAATCACCAAAGAGCAGCAGGCGCTCGTGAAATCCATCGTAGATGCTTACAACAGACATCAAATTCCTCAAGACGTGACCAAAAAGCTGCTTCAAGAACAGTACAGCGCAGAGGAAAACTTCCTCCTATTGACAGAAATGGCAACAAATCAAGTTCAAGTTCTGGTGGAGTTTACAAAAAATATTCCAGGCTTTCTCTCTCTGGATCGTGAGGATCAGATCGCTCTGCTGAAGGGTTCGGCTGTGGAAGCCATGTTTCTACGCTCAGCTCAGGTTCTCAGCAAAAGGATGCCCAACGGATACAAGGAAGTTTTAAAGGAGAGGGTACGCAATAGTGGTATGTCAGAGGAATTCATGACACCCATGTTCAACTTTTACAAAAGCATCGATGAACTCCAAATGGTGCAGGAGGAACAGGCTCTTCTAACCGCCGTAACCATCCTGACACCAGATCGGCCTTACGTGAAGGATTATCAGGCTGTGGAGAGACTTCAGGAGACCATGCTGGTCGTGCTGAGGAAGCTGTGTGTCCTGCAACACCCACAGGACCCACAGTACTTTGCTCGTCTCCTGGGCCGTCTGACGGAGCTGAGAACACTCAACCACTACCACGCAGAGATGCTAACATCCTGGAGAATGAACGACCAAAAATTTACACCGCTGCTCTGTGAGATCTGGGATGTGCAGTGA
>XM_039809445.1
TGGCATTTGGCCATTGCCATTTTGGTTATGCGAAACTGGAAGTTATTACAAGTGATCCTAAAGGTAAACTGTCTGAACCaattttcatggcaatccatccaacagtttcTGGAAATAATTCATGTAAATGTACCATCGACATTTAAAATCATAAGTAACTAAAGCATAACAATAAattcacacacacttacacaggagaaaagttaaatatatagaaaaaatatatagaaatagtCCTATATATAGTTTCTGTCCATGCAAATACGATTACAAATAGTTTGGTGAGAGGATGATCCGTacatttattgtcacaacaaCCAATCAACTAACTGCTATTATAGGCTGACTGCACAAGACACACCTCCAACCTGTCCAAGTGAGTTGTAACATAACACCACGTGCTGCAAACCAGTTAGCAAAAAAGCAGGGAAGTGAAATACATGTAGCAAGCAAAAATAACAGATCAATGTTTGAAATGTCCATCTTCTGTCACTCCAAGTGGTTGTGGTACAAATGCAACGTTGACTGAGCCAaccgaaaaaagaaaaagaaaaaacaagacgaaaaactgaacattattcCAGGATCACTGTTGCACTtttaaataatcaattaatcttaaCACATTTTGAACATGACGGTTAGTCAAAGGGGAACAGTACAGAGTTTATCTGATAAGGCGTCttacaaaaatgtttggctGTCACAATCCTTGATAAATCTAGATATTTCTAAACCAATCTGATCTAAAATTtgaaagaaaatacaaacatgTAGGCGGAAAATAAATACCCTGcacctgcaaaagaaaatgtatggATGCACATGATAAATATTTTACAATCTCACCATACAGTAGCAGTCAGTTGGTACCATTGCCCAAATCTGGAAATGACTATACATATCATAGCCAGCTACTTGGGACGATGTCAGTAAATGTGACTTTGTGGTTAATGAGTAGCCGTGGCAACCTTTGCTCCTCTTGGGATTTCTCAAGCAAGCGCCAAGGAGTTCAGTACTTGATCTGCCGTTCTCCCATCTTTCCCATCAAAAGAAATAAATGGAAGCTGATTTGTTAGTTAGAAGCGAAGGAAGGACTGGTCTACAAAACACAGCTGGACTGTTGGGATCAGAGACTAAAGACTCTGAatagtttgtgtgtttggttgcACAGAGATGGCCATGGTCCAGACCAAGTCTTCAAGAGATATTCTGGCAGATCAAGGAAGCCCTCTCCTGCAGGATCCCGACATCTTACCCTTCACCAGCTATCCAAGCATGCAATACCCGTGCATAGAGCCGACCATGTCTTCCACACCATACTACTCCAGTCAGAACTACTACCCACAGTACAATGGAGATGAATGGTATTCACACACGGGGATATATGAACTGAGGAAAGGACCGCTGGAGGTCAGCTTTGATGCTGAGATGGAGGATGTGTCTGCTGTGGTGCCTGCTGTGTGCAAGAGGACCCGGCACATGTCGCAGGCTGGAAGGGTCAAAGGGGAGGaactgtgtgtggtgtgtggagaCAAGGCCTCTGGATACCACTATAACGCTCTTACCTGTGAGGGATGTAAAGGTTTTTTCAGACGGAGCATAACCAAGAACGCTGTGTACAAATGCAAGAGTGGCGGAAACTGTGAGATGGACATGTACATGCGCCGAAAATGCCAGGAGTGTCGGCTAAGAAAGTGCAAGGAGATGGGCATGCTGGCTGAATTGAAGCCTTCATCACCGCTGGCAGGCCTGCTGACAGAGATCCAGTGTAAGTCTAAAAGGCTGCGGAAGAACACCAAGGCCTCCCCGGGACAGTCGACTGGAGACGAGACAGAGGGGGCGGAcaacacagacaacaaacagGTCACCTCAACCACTAAACTGTCAAAGGAAAAAGTTGAAATCACCAAAGAGCAGCAGGCGCTCGTGAAATCCATCGTAGATGCTTACAACAGACATCAAATTCCTCAAGACGTGACCAAAAAGCTGCTTCAAGAACAGTACAGCGCAGAGGAAAACTTCCTCCTATTGACAGAAATGGCAACAAATCAAGTTCAAGTTCTGGTGGAGTTTACAAAAAATATTCCAGGCTTTCTCTCTCTGGATCGTGAGGATCAGATCGCTCTGCTGAAGGGTTCGGCTGTGGAAGCCATGTTTCTACGCTCAGCTCAGGTTCTCAGCAAAAGGATGCCCAACGGATACAAGGAAGTTTTAAAGGAGAGGGTACGCAATAGTGGTATGTCAGAGGAATTCATGACACCCATGTTCAACTTTTACAAAAGCATCGATGAACTCCAAATGGTGCAGGAGGAACAGGCTCTTCTAACCGCCGTAACCATCCTGACACCAGATCGGCCTTACGTGAAGGATTATCAGGCTGTGGAGAGACTTCAGGAGACCATGCTGGTCGTGCTGAGGAAGCTGTGTGTCCTGCAACACCCACAGGACCCACAGTACTTTGCTCGTCTCCTGGGCCGTCTGACGGAGCTGAGAACACTCAACCACTACCACGCAGAGATGCTAACATCCTGGAGAATGAACGACCAAAAATTTACACCGCTGCTCTGTGAGATCTGGGATGTGCAGTGA
>XM_039809446.1
ATGGCCATGGTCCAGACCAAGTCTTCAAGAGATATTCTGGCAGATCAAGGAAGCCCTCTCCTGCAGGATCCCGACATCTTACCCTTCACCAGCTATCCAAGCATGCAATACCCGTGCATAGAGCCGACCATGTCTTCCACACCATACTACTCCAGTCAGAACTACTACCCACAGTACAATGGAGATGAATGGTATTCACACACGGGGATATATGAACTGAGGAAAGGACCGCTGGAGGTCAGCTTTGATGCTGAGATGGAGGATGTGTCTGCTGTGGTGCCTGCTGTGTGCAAGAGGACCCGGCACATGTCGCAGGCTGGAAGGGTCAAAGGGGAGGaactgtgtgtggtgtgtggagaCAAGGCCTCTGGATACCACTATAACGCTCTTACCTGTGAGGGATGTAAAGGTTTTTTCAGACGGAGCATAACCAAGAACGCTGTGTACAAATGCAAGAGTGGCGGAAACTGTGAGATGGACATGTACATGCGCCGAAAATGCCAGGAGTGTCGGCTAAGAAAGTGCAAGGAGATGGGCATGCTGGCTGAATGCCTGCTGACAGAGATCCAGTGTAAGTCTAAAAGGCTGCGGAAGAACACCAAGGCCTCCCCGGGACAGTCGACTGGAGACGAGACAGAGGGGGCGGAcaacacagacaacaaacagGTCACCTCAACCACTAAACTGTCAAAGGAAAAAGTTGAAATCACCAAAGAGCAGCAGGCGCTCGTGAAATCCATCGTAGATGCTTACAACAGACATCAAATTCCTCAAGACGTGACCAAAAAGCTGCTTCAAGAACAGTACAGCGCAGAGGAAAACTTCCTCCTATTGACAGAAATGGCAACAAATCAAGTTCAAGTTCTGGTGGAGTTTACAAAAAATATTCCAGGCTTTCTCTCTCTGGATCGTGAGGATCAGATCGCTCTGCTGAAGGGTTCGGCTGTGGAAGCCATGTTTCTACGCTCAGCTCAGGTTCTCAGCAAAAGGATGCCCAACGGATACAAGGAAGTTTTAAAGGAGAGGGTACGCAATAGTGGTATGTCAGAGGAATTCATGACACCCATGTTCAACTTTTACAAAAGCATCGATGAACTCCAAATGGTGCAGGAGGAACAGGCTCTTCTAACCGCCGTAACCATCCTGACACCAGATCGGCCTTACGTGAAGGATTATCAGGCTGTGGAGAGACTTCAGGAGACCATGCTGGTCGTGCTGAGGAAGCTGTGTGTCCTGCAACACCCACAGGACCCACAGTACTTTGCTCGTCTCCTGGGCCGTCTGACGGAGCTGAGAACACTCAACCACTACCACGCAGAGATGCTAACATCCTGGAGAATGAACGACCAAAAATTTACACCGCTGCTCTGTGAGATCTGGGATGTGCAGTGA

Function

symbol description
nr1h4 Enables bile acid binding activity and nuclear receptor activity. Acts upstream of or within regulation of transcription, DNA-templated. Predicted to be located in nucleus. Is expressed in intestinal bulb and liver. Human ortholog(s) of this gene implicated in extrahepatic cholestasis; hepatocellular carcinoma; and progressive familial intrahepatic cholestasis 5. Orthologous to human NR1H4 (nuclear receptor subfamily 1 group H member 4).

NR:

description
PREDICTED: bile acid receptor isoform X1

GO: NA

KEGG:

id description
K08537 NR1H4, FXR; farnesoid X receptor

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039809442.1 True 2750 mRNA 0.44 10 12742142 12758791
XM_039809443.1 False 1706 mRNA 0.49 10 12743161 12758790
XM_039809445.1 False 2592 mRNA 0.44 9 12743161 12756888
XM_039809446.1 False 1392 mRNA 0.50 9 12743161 12755712

Neighbor

gene id symbol gene type direction distance location
ube2na ube2n coding downstream 5461 12730355 ~ 12736681 (-)
nudt4a nudt4,LOC100689726,LOC101064765,LOC102791978 coding downstream 14799 12712453 ~ 12727343 (-)
eea1 eea1 coding downstream 29790 12689693 ~ 12712352 (-)
itpr2 itpr2 coding downstream 81974 12600381 ~ 12660168 (-)
bhlhe41 bhlhe41,LOC102793158 coding downstream 154651 12585311 ~ 12587491 (-)
slc17a8 slc17a8 coding upstream 1841 12760632 ~ 12774255 (-)
si:dkey-103i16.6 LOC103374744,LOC101471570 coding upstream 155847 12914638 ~ 12931212 (-)
LOC120564143 NA coding upstream 182205 12940996 ~ 12944236 (-)
LOC120564144 LOC103374492 coding upstream 207173 12965964 ~ 12974409 (-)
LOC120563354 LOC104941983,LOC103374494 coding upstream 243329 13002120 ~ 13014975 (-)
G84243 NA non-coding downstream 53507 12687483 ~ 12688635 (-)
G84244 NA non-coding downstream 54855 12687034 ~ 12687287 (-)
G84236 NA non-coding downstream 128866 12580603 ~ 12613276 (-)
G84130 NA non-coding downstream 536611 12205241 ~ 12205531 (-)
G84129 LOC104959604 non-coding downstream 541307 12177943 ~ 12200835 (-)
G84294 NA non-coding upstream 71565 12830356 ~ 12834571 (-)
G84320 rfx4 non-coding upstream 126872 12885663 ~ 12885917 (-)
G84321 NA non-coding upstream 127800 12886591 ~ 12886903 (-)
G84324 NA non-coding upstream 133235 12892026 ~ 12893439 (-)
G84326 rfx4 non-coding upstream 138268 12897059 ~ 12898557 (-)
G84123 cat,LOC102293651,LOC102204975,LOC102775586,LOC102293936 other downstream 597596 12141523 ~ 12144546 (-)
G84083 NA other downstream 853744 11888027 ~ 11888398 (-)
ptpn9a ptpn9 other downstream 1481181 11173553 ~ 11260961 (-)
oaz2a oaz2,LOC104929548,LOC101470759,LOC102200097,LOC106531198 other downstream 1828925 10823286 ~ 10913217 (-)
LOC120564603 NA other downstream 2027297 10706219 ~ 10714845 (-)
G84530 LOC100696427,LOC106963151,LOC107104182,LOC107388919,LOC104956556,LOC102796452,LOC102202152 other upstream 471826 13230617 ~ 13231095 (-)
prr5a prr5,LOC103371545 other upstream 488037 13246828 ~ 13256093 (-)
LOC120564547 fbxl14,LOC103380143,LOC107388938 other upstream 567182 13325973 ~ 13385205 (-)
mafb maf,LOC104941368,LOC104940469,LOC101071510,LOC101484138,LOC103380135,LOC102219741,LOC106520304 other upstream 815040 13573831 ~ 13618786 (-)
zgc:77752 NA other upstream 1272313 14031104 ~ 14037716 (-)

Expression


Co-expression Network