si:dkey-29p10.4


Basic Information

Item Value
gene id si:dkey-29p10.4
gene name NA
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053119.1
NCBI id CM020916.1
chromosome length 42187026
location 20075491 ~ 20083600 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039809626.1
CCTCTACTGCTTGGCATCGCGGAAACAGAAACTTCAAAAATTCAGCCAAAACAAAATGGGAGCGTCGTTGGACACTCCGGCAAGGTGTCCTCTGTGCAACGAGCTGACCCGGGACCCCATCACTCTGAAATGTAACCACCGGTTCTGCCAACGGTGTATCGGAGACTTGTGGAGTGTTGCCCCGAACGGGCCGTACCACTGCCCGGAGTGGAGGTGTAAAACAGTGTACCAGACTCTGCCGTTTGATAGCAAACGGCTGCCAAACAACAATCCGTGGATTCAGCCTCGCAGCGCTGCAGGCACATCCAGTAATGATGAACAAAACACATTTGACTCCACATTGCGGAGGCCCTCACTCACCAGCCGACTTCTCGGGAAGAGAAAAGCCAGCACACCTGTATCAGAGCCACCTGACACAAAGCGATCAACTGTGGCGTCTCCCCGCGAGTGGTCCAATGACACCGACACTGCCACCACTTCCTTCTCAGATAAACCTGGGCAGTCGACTAGTGTGGAGACATCCAAGAAAGCAGTGCACCTAGAATCTACACTGTCGGAGAGTGGTGATGGCACATCCTCCAGTGACAACTCTGATGGTAAGGCAGTACCTGCAAGTGATGTGCCACATGACATCTCAATCCAGCAGAACCAGCATAAATCACTAGAAGTTGTCTCATTGGATGACTCTGACACATCCAATGAAGTAGATATATGTGATGCACCTGCTCTTGCAACCCCCAAGAAAGACACACAAGTGACAGGAATTCATGTGTCGCCAAAGAAACCTGCCACATCTGCCAACTCTGATTCCTTTCCTGGGGTCTCAACTCCTGGTAAAGGTAAGTCTCCTGTACACCATGTCAGCAAGTCTCCCCTGATATCCACCAAACATCCTGTTGATGCTCCAGGATCCCCAATTCGTGTTGCCATCTTCCCGGGGTCAGAGAGCCAAAATGCCACCCCTGTGCGCTGCCATTATTGCCCTAAAACTAGGTATCAGCCCGCTGTTAAGACCTGTCTGGTGTGCGGAGCTTCCATGTGTACAGAGCACCTGCGTCCCCACCTGGACTCCCCTGTTTTTCAGAATCACACCCTGGTCCCTCCCATGGAGGATTTTTCTCCCTGGAGGTGCCAGGAGCACCAGGAGATAAACCGTATCTACTGTCGgcagtgtggagtgtgtgtgtgcacagtgtGTACTGTCATAGGCTCACACCGCAACCACGTCTGTATCAGCATCAGGGATGCAGAGATAGAGCTCAGGGGGAACCTAAAAGAAGAAATTAAGCAACTTCAGGCAGCTGAGCAGGAAGTGAAGAACAGGGTGACTGAACTCGCACAGAAGAAAGATTCCTTTAGAGTGGTTTTGAGTGAGGCTCGAGCAGGGGTGCAGCAGCAGTACGGAGCCATCCGAGAGGCCTTGGAGCAAGAGGAGCAATCAGCTCTTCAGTGTGTGACAAAGGAGGAGAACAGGGTTCTGGGGGGACTAGATGAGAAACTCGGCCACCTCCGGAGCTCCCTGCAATCCATCCAGCAAGGCCTTCACAGCCTGGAGGGACTGGCTGATGCAAAGGGAGACAAACGCATCATGGACCAGGTCTTCATTATGGAATACAGCAAGGTAGCCCAACTGGCTAGTAGCATGGGGGGCTGTGCGGACCAGTTCGAGGCCCCAGAGGAAGTGGATCGGGCTCGGCTGAAATGTCTGCAGAAGTGGACCGAGAAACGTCTGGACACAGTCGTCATCACTGTGCCAGGCAAATACAGAGACCTCTACAGACTGCTATATGGCACCACTCCTATCTTGGATGCAGATACAGCCCACCCcaagctgcagctgtctgataacaacaggaaggtgacctACAGCGAATCCCAGCAGGCCTACACAGAGCAGGAGGCTCGCTTCAGCTCCTTCCCACAGGTCCTGGCCTCCTGTTCCCTGGAGGGAGGGTGCTGGTACTGGGAGGTGGATGTGTCTATGGATGAGGGTCGCTGGAAGGTGGGGCTGTGTGAGGGTCAGATAGAGAGGAAAGGCCAAAAGGACAACTCTCGTCTGGGCTTCAACTCCTACTCCTGGTGCCTGGCCTGTGACAAAAAGAAGATGGAAGCTCTGCATAACAAGGTGGCGGTTCCTGTAGATGCAGGCGGGCTGCAGAGGGTAGGAGTGTTCCTCGACTTTGAGGAGGGTATTTTATCATTCTTTAATGTGACACCAGGGGGCAGTCTAGCTTTAATGCATTCATACAAACACAGGTTCACTGACCCTCTGTACCCAGCCTTGTCTGTGTCTAAAACACACCTGGCCATCTGTGATCTCTTTCAGTCATAAACCATGCAATACTGGTATGTCAATTGAGCTGGAAATTTACAGAATACATGGCAGCGCAGTGatgtttttatatgtaaaaACTATTTCATCATCGAAAAATTTACTAATCTGTAAAATTCtctatacactgtatataatgCTCTACTTTTGCAAAAATCCTAGAGGCCATTCCTAGAGGCCATTcattatacatttttacatGCAGCATATTTTTGTAACAGGATTTTAAGTTTCATATGCTTCTGATTTTACATTGTCAAAGAACAAAATGAGCAAGATTTTACATGGGATGAATGTTATCAGTGCAGATCAATAAAAAAGTTGATATTTCcattttgaatgttttaaaAATTTTCAAAATTTTCTTGACGTCTtaactttacagtaataaaatGTCAGTTTCGAAAGCAAAGTAAAA
>XM_039809628.1
CCTCTACTGCTTGGCATCGCGGAAACAGAAACTTCAAAAATTCAGCCAAAACAAAATGGGAGCGTCGTTGGACACTCCGGCAAGGTGTCCTCTGTGCAACGAGCTGACCCGGGACCCCATCACTCTGAAATGTAACCACCGGTTCTGCCAACGGTGTATCGGAGACTTGTGGAGTGTTGCCCCGAACGGGCCGTACCACTGCCCGGAGTGGAGGTGTAAAACAGTGTACCAGACTCTGCCGTTTGATAGCAAACGGCTGCCAAACAACAATCCGTGGATTCAGCCTCGCAGCGCTGCAGGCACATCCAGTAATGATGAACAAAACACATTTGACTCCACATTGCGGAGGCCCTCACTCACCAGCCGACTTCTCGGGAAGAGAAAAGCCAGCACACCTGTATCAGAGCCACCTGACACAAAGCGATCAACTGTGGCGTCTCCCCGCGAGTGGTCCAATGACACCGACACTGCCACCACTTCCTTCTCAGATAAACCTGGGCAGTCGACTAGTGTGGAGACATCCAAGAAAGCAGTGCACCTAGAATCTACACTGTCGGAGAGTGGTGATGGCACATCCTCCAGTGACAACTCTGATGGTAAGGCAGTACCTGCAAGTGATGTGCCACATGACATCTCAATCCAGCAGAACCAGCATAAATCACTAGAAGTTGTCTCATTGGATGACTCTGACACATCCAATGAAGTAGATATATGTGATGCACCTGCTCTTGCAACCCCCAAGAAAGACACACAAGTGACAGGAATTCATGTGTCGCCAAAGAAACCTGCCACATCTGCCAACTCTGATTCCTTTCCTGGGGTCTCAACTCCTGGTAAAGGATCCCCAATTCGTGTTGCCATCTTCCCGGGGTCAGAGAGCCAAAATGCCACCCCTGTGCGCTGCCATTATTGCCCTAAAACTAGGTATCAGCCCGCTGTTAAGACCTGTCTGGTGTGCGGAGCTTCCATGTGTACAGAGCACCTGCGTCCCCACCTGGACTCCCCTGTTTTTCAGAATCACACCCTGGTCCCTCCCATGGAGGATTTTTCTCCCTGGAGGTGCCAGGAGCACCAGGAGATAAACCGTATCTACTGTCGgcagtgtggagtgtgtgtgtgcacagtgtGTACTGTCATAGGCTCACACCGCAACCACGTCTGTATCAGCATCAGGGATGCAGAGATAGAGCTCAGGGGGAACCTAAAAGAAGAAATTAAGCAACTTCAGGCAGCTGAGCAGGAAGTGAAGAACAGGGTGACTGAACTCGCACAGAAGAAAGATTCCTTTAGAGTGGTTTTGAGTGAGGCTCGAGCAGGGGTGCAGCAGCAGTACGGAGCCATCCGAGAGGCCTTGGAGCAAGAGGAGCAATCAGCTCTTCAGTGTGTGACAAAGGAGGAGAACAGGGTTCTGGGGGGACTAGATGAGAAACTCGGCCACCTCCGGAGCTCCCTGCAATCCATCCAGCAAGGCCTTCACAGCCTGGAGGGACTGGCTGATGCAAAGGGAGACAAACGCATCATGGACCAGGTCTTCATTATGGAATACAGCAAGGTAGCCCAACTGGCTAGTAGCATGGGGGGCTGTGCGGACCAGTTCGAGGCCCCAGAGGAAGTGGATCGGGCTCGGCTGAAATGTCTGCAGAAGTGGACCGAGAAACGTCTGGACACAGTCGTCATCACTGTGCCAGGCAAATACAGAGACCTCTACAGACTGCTATATGGCACCACTCCTATCTTGGATGCAGATACAGCCCACCCcaagctgcagctgtctgataacaacaggaaggtgacctACAGCGAATCCCAGCAGGCCTACACAGAGCAGGAGGCTCGCTTCAGCTCCTTCCCACAGGTCCTGGCCTCCTGTTCCCTGGAGGGAGGGTGCTGGTACTGGGAGGTGGATGTGTCTATGGATGAGGGTCGCTGGAAGGTGGGGCTGTGTGAGGGTCAGATAGAGAGGAAAGGCCAAAAGGACAACTCTCGTCTGGGCTTCAACTCCTACTCCTGGTGCCTGGCCTGTGACAAAAAGAAGATGGAAGCTCTGCATAACAAGGTGGCGGTTCCTGTAGATGCAGGCGGGCTGCAGAGGGTAGGAGTGTTCCTCGACTTTGAGGAGGGTATTTTATCATTCTTTAATGTGACACCAGGGGGCAGTCTAGCTTTAATGCATTCATACAAACACAGGTTCACTGACCCTCTGTACCCAGCCTTGTCTGTGTCTAAAACACACCTGGCCATCTGTGATCTCTTTCAGTCATAAACCATGCAATACTGGTATGTCAATTGAGCTGGAAATTTACAGAATACATGGCAGCGCAGTGatgtttttatatgtaaaaACTATTTCATCATCGAAAAATTTACTAATCTGTAAAATTCtctatacactgtatataatgCTCTACTTTTGCAAAAATCCTAGAGGCCATTCCTAGAGGCCATTcattatacatttttacatGCAGCATATTTTTGTAACAGGATTTTAAGTTTCATATGCTTCTGATTTTACATTGTCAAAGAACAAAATGAGCAAGATTTTACATGGGATGAATGTTATCAGTGCAGATCAATAAAAAAGTTGATATTTCcattttgaatgttttaaaAATTTTCAAAATTTTCTTGACGTCTtaactttacagtaataaaatGTCAGTTTCGAAAGCAAAGTAAAA

Function

NR:

description
tripartite motif-containing protein 16-like

GO: NA

KEGG:

id description
ko03030 DNA replication
ko03420 Nucleotide excision repair
ko03430 Mismatch repair
ko04110 Cell cycle
ko04111 Cell cycle - yeast

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039809626.1 True 2750 mRNA 0.49 7 20075491 20083600
XM_039809628.1 False 2681 mRNA 0.49 8 20075491 20083600

Neighbor

gene id symbol gene type direction distance location
LOC120564329 tp53i11 coding downstream 16368 20016169 ~ 20059123 (-)
cd82b LOC103355222 coding downstream 63181 19987783 ~ 20012310 (-)
tspan18b tspan18 coding downstream 120676 19885911 ~ 19954815 (-)
caprin1b caprin1 coding downstream 262618 19799132 ~ 19812873 (-)
nat10 nat10 coding downstream 277353 19788711 ~ 19798138 (-)
LOC120564471 LOC104960979,LOC103355225,LOC103150264,LOC103466396,LOC106915861 coding upstream 4528 20088128 ~ 20115384 (-)
bncr NA coding upstream 169199 20252799 ~ 20255338 (-)
LOC120563520 NA coding upstream 171766 20255366 ~ 20256420 (-)
LOC120563522 NA coding upstream 172844 20256444 ~ 20257777 (-)
LOC120563518 plcz1,LOC104942417,LOC106523397,LOC108229959 coding upstream 192277 20275877 ~ 20293118 (-)
G86605 NA non-coding downstream 59679 20014338 ~ 20015812 (-)
G86575 lmo2 non-coding downstream 252118 19821540 ~ 19823373 (-)
G86566 NA non-coding downstream 298448 19774307 ~ 19777043 (-)
G86549 NA non-coding downstream 350298 19723973 ~ 19725193 (-)
G86543 LOC104950121,LOC106908881,LOC103380454 non-coding downstream 379676 19694995 ~ 19695815 (-)
G86652 reln non-coding upstream 157833 20241433 ~ 20241850 (-)
G86660 NA non-coding upstream 167290 20250890 ~ 20264206 (-)
G86686 NA non-coding upstream 319144 20402744 ~ 20461823 (-)
G86761 NA non-coding upstream 615215 20698815 ~ 20699637 (-)
G86853 NA non-coding upstream 824789 20908389 ~ 20908590 (-)
cep152 cep152,LOC104960117 other downstream 501803 19557452 ~ 19573688 (-)
G86402 LOC103363837 other downstream 686916 19387822 ~ 19388575 (-)
arpp19b arpp19,LOC100693429,LOC102791975,LOC106919339,LOC101065895 other downstream 758013 19315385 ~ 19317478 (-)
LOC120564082 svip other downstream 915004 19156758 ~ 19160487 (-)
G86194 tph1 other downstream 1064575 19007196 ~ 19010916 (-)
G86638 NA other upstream 169039 20252639 ~ 20259259 (-)
LOC120564033 LOC103358331,LOC102195670 other upstream 723282 20806882 ~ 20829235 (-)
LOC120563850 NA other upstream 794068 20877668 ~ 20887626 (-)
dnajb9a dnajb9,LOC100706374,LOC102775779,LOC102215328 other upstream 1285931 21369531 ~ 21372509 (-)
G87140 NA other upstream 1629442 21713042 ~ 21713554 (-)

Expression


Co-expression Network