sinhcaf (fam60a,LOC107388928,LOC103376222,LOC104940447)


Basic Information

Item Value
gene id sinhcaf
gene name fam60a,LOC107388928,LOC103376222,LOC104940447
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053119.1
NCBI id CM020916.1
chromosome length 42187026
location 13159313 ~ 13166108 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039809640.1
ATGGAGGTGTGGATACGACGCATGCGCACTATGTTCACAACTATTCAGACCCGTCCACAAGCGCAGACATCAACAAGAGCGGGTTACTGATGCGGGTTGATTTTCATAATAGTCACATCGTAACGACGCGCTCTAAGGACTACTTTGTATCAGCTTCACGCAGCTTGCAACAAGATGTTTGGCTTTCATAAGCCAAAAATGTACAGGAGTTTGGACGGCTGCTGCATCTGCCGCGCAAAGTCGTCAAGCTCTCGTTTCACGGACAGTAAGCGGTACGAGAAAGACTTCAGGAGCTGTTTTGGACTGAGTGAAACGCGATCTGGAGAAATCTGTAACGCCTGTGTGCTGCTGGTGAAACGATGGAAAAAGCTACCTGTGGGAACCAAGAAGAACTGGAACCATGTTGTTGATGCCAGAGGAGGTCCCAGCCTAAAGATAACTTCCAGGCCCAAGAAGATAAAGTCCATCTCCAAGAAAGCCCGGCCGAGCCAGATCAGCAGGCTGCAGAAAGAGCTTAAAAGAAACAATTCAGATGCTCACAGCACCACCTCCAGTACCTCCCCAGCTCAGTCTCCGAGCTACAGCAACCTGTCAGATGACGGCTCAGACACTGAGCTCAGCCCTGGATCCAGCCGCTCCCCTGTTTTCTCATTTCTGGACCTCACTTACTGGAAGAGGCAAAAGGTGTGCTGTGGAATAATCTACAAGGGGCGCTTTGGGGAGGTGCTCATTGACCCCCATTTGTTCAAACCATGCTGCCGCAACaaacggcagcagcagcaagaggaggaggaagaagaggaggaggaggaagatgaggaggaagaggtggaGATAGAGGAGGGCCAGGTGGGCGTGGATGTCAGCGGGCATAAATCCCAGACAGAAGAGGAAGTGAAGGAGACACCAAGGTGTGAGGAAAATGCAGAGCCTGCACAGCTATGTGTAACCGTGACAACACCTCCAACCAGGAGCGGGGCAGTGATGGAGGACGGGTGGTAAAGTCAAAACTCCACCTTGCACACATCTCTGAAGAAATCTTGGGGTGCTGTTTTTTTCTCAAGCACTTACAGAAAGAAGTTGCCTCAGATTGCCTTCAATCATAAAGCAGCTGGAAATCCTTTGGTCTTCTCCATAATAACTTTGGaggtttgtttattttgtttaaatggTAACTTATGAACTgttgttttttcactttgtcTCTTATGTTGTATTTAATATTCATGCCATCCTGATGATTAGACCGTCATCTGTGGTGTTTTTGATCTACTTTAGATGAAATGCTGGAGCTCTACTTTGCTGGTACATTGAAAATATTTGATTCCAAAACGCAATAGATCATCATCTTACTCACAGAAAGAAGGTGCtacttgaaatacattactcaACATTTCAAACATACAGCTGAACCCATTCTCAATGTGTATCTTTTACAAGCATACATGTTAAGATTGACTAATATAATGACATTACTTTTGCTTTCTTTGTTAAGAGTAGATATCTCTTTTTTGAAATGGTGGATATCTCGTTTTGGAATGAATGACACTTTACATTGACAGAGCACAGACCTGTACAGTAGcccttgtgtttgtgtcttttcaCATTGACATCCATTCCTATCAAAGAGTCTGTGTTTGTAGACCGTCTCTGTGTGCAAATACGTGTGTGGGTCCCATTTAAATAAGGCCTATTCACAGCTTCAACAGCAAATACACCAGCCTTAATTATGTGTTACAGACAGTGCTAGCGTTAATTCTGGATTAAGGAACACAAAGGGACAGTAGCTATATTTATTGTGGCCTCAGCAACACATACTGTAGTGCATTTTGCATGAATGGCAAAGCCCACTCATCCAAAAGACCTAGCCTAATGATCTGATGCATGAGTCTACTAAAATTGCATGGCCTTATATGAACTGTAAatcttacttttatttttttggatcCATTTCTCTGAagttttaacttatttttatatgtaaggtaaaaaaaaaagcaaaaatagaAATGTCTTTGCATAATAATACCACATAATACAACAGCAAAACACACAATGGGTCTATAGTCATTCAACAATATCAATATCAGTGATTCCCGACATTCCTGGGTCAGTATAGATAAAACACTTTATACAAGTTGAAATTCTATGCCATTGCCTCTTATATACCACAAATGTGTTGTTATatatagcctaatattactTTATTTATCAAACGAAAGCCAAAGCACATTGAAATTCACCCAATGTCAAATCAAATCAGGTTTTCTATGGACACTTGTGCTTGTCCGAGGtcatttgtatgtatgtttatgGTATTCTAAACAGAACACTAATATGAAAATTCATACATGTGATGTTGTAGTTGGGAGCAGAGGGGATGTTATGTACATAATGGGTTGGGTGAGCCATATGGCTCATATATGggtttcattatttatttatttcatatttatttgtatCACTGCATCCCCGCTTAGAAGTGTAATACTATGAATTATTTTCATCTTTAGCTTATACGTAGAATGGTTTTGTACTTCAGAAATCGAATGTAATTCTCTCGCaggctttttttaacattgcgTTGAATTACTGGTTGTCAATATTTGTGAAATGTTAAGTATTTATTTACTCATCAGTTGAGTTGCGTGCAACCTAACTTATTCTGTACCATCACTTTGGATCTGTATCATGTAGACTGAGACGAATGATAGATTGCAACCAAACTGTACTTTCCCCTTTTAGCCTGTAGCTGAAAAATGTTACAGAATTGTAGGACACCTAACTCTAGATTTGCATGTACTGTTGCTATGCATTTACTTAGCTTACAAGTTAGACAAAgcggttttgtattttttataaatcatgtacgTTTTTTACTTGTCCCTTAATAAAAGTACTTTTGTGAGTTTTCTGGAA

Function

NR:

description
PREDICTED: protein FAM60A-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039809640.1 True 2919 mRNA 0.40 6 13159313 13166108

Neighbor

gene id symbol gene type direction distance location
kxd1 kxd1 coding downstream 1217 13155411 ~ 13158096 (-)
LOC120563727 LOC104940840,LOC103375251,LOC104940445 coding downstream 6609 13147847 ~ 13152704 (-)
LOC120564327 LOC104941984,LOC100534567,LOC102302869 coding downstream 132945 13016565 ~ 13026368 (-)
LOC120563354 LOC104941983,LOC103374494 coding downstream 144338 13002120 ~ 13014975 (-)
LOC120564144 LOC103374492 coding downstream 184904 12965964 ~ 12974409 (-)
LOC120564344 LOC104940834,LOC103371551 coding upstream 1210 13167318 ~ 13187582 (-)
armc10 armc10 coding upstream 22369 13188477 ~ 13192744 (-)
LOC120563974 lrrc17 coding upstream 38568 13204676 ~ 13209541 (-)
fam185a fam185a coding upstream 46701 13212809 ~ 13216422 (-)
LOC120564726 LOC103371554,LOC106926584,LOC106963159,LOC101069521 coding upstream 51829 13217937 ~ 13225042 (-)
G84378 NA non-coding downstream 113284 12977962 ~ 13046029 (-)
G84384 NA non-coding downstream 118867 12991027 ~ 13040446 (-)
G84376 NA non-coding downstream 175253 12972389 ~ 12984060 (-)
G84370 NA non-coding downstream 210390 12948661 ~ 12948923 (-)
G84369 NA non-coding downstream 210704 12948274 ~ 12948609 (-)
G84446 NA non-coding upstream 27161 13193269 ~ 13193706 (-)
LOC120563976 NA non-coding upstream 34835 13200943 ~ 13201663 (-)
G84532 NA non-coding upstream 69065 13235173 ~ 13235410 (-)
G84533 NA non-coding upstream 70543 13236651 ~ 13236861 (-)
G84528 NA non-coding upstream 105144 13271252 ~ 13272529 (-)
G84123 cat,LOC102293651,LOC102204975,LOC102775586,LOC102293936 other downstream 1014767 12141523 ~ 12144546 (-)
G84083 NA other downstream 1270915 11888027 ~ 11888398 (-)
ptpn9a ptpn9 other downstream 1898352 11173553 ~ 11260961 (-)
oaz2a oaz2,LOC104929548,LOC101470759,LOC102200097,LOC106531198 other downstream 2246096 10823286 ~ 10913217 (-)
LOC120564603 NA other downstream 2444468 10706219 ~ 10714845 (-)
G84530 LOC100696427,LOC106963151,LOC107104182,LOC107388919,LOC104956556,LOC102796452,LOC102202152 other upstream 64509 13230617 ~ 13231095 (-)
prr5a prr5,LOC103371545 other upstream 80720 13246828 ~ 13256093 (-)
LOC120564547 fbxl14,LOC103380143,LOC107388938 other upstream 159865 13325973 ~ 13385205 (-)
mafb maf,LOC104941368,LOC104940469,LOC101071510,LOC101484138,LOC103380135,LOC102219741,LOC106520304 other upstream 407723 13573831 ~ 13618786 (-)
zgc:77752 NA other upstream 864996 14031104 ~ 14037716 (-)

Expression


Co-expression Network