caprin1b (caprin1)


Basic Information

Item Value
gene id caprin1b
gene name caprin1
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053119.1
NCBI id CM020916.1
chromosome length 42187026
location 19799132 ~ 19812873 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039809699.1
CTTTCTCACCGTCTCAGTTGTCGGTGAGGCCGGCGGGGCGGATCCCACGCtagagtgaaagagaaaataaagcaacacaacaaaaataacaacttggccgttttttttttacattcactaGCAAGCTCCCCTGTGGATATATACCATCAAGATGCCCTCAGCGATGAACGCAAATAGGACAGTGCAGTCTGCCAGCCCAGATGTGGGATCCGCTCCAGGGTCAATGATTAATTTTGCACTTGGTGGACAGTCCGAAGTTATGAAGCAAGTGCTGTGTGTCCTCGACAAGAAGGTCCGCAACATGGAGAAGAAAAAGAGTAAACTGGATGACTATCAAGTCAGGAAGGATAAAGGGGAGAGTCTCAATCAGGACCAGCTGGAGGCCCTCTCCAAATTCCAGGAAATCACAAATAACTTAGAATTTGGCCGAGAGTTGCAGAAGACGTTCATCACACTAGGACAAGATATCCAGAAGGTGGTGAAGAAGTCTGCACGGCGGGAGCAGCTGCAGCGGGAAGAGGCCGAGCAGAGGAGGCTGAAGACTGTTCTGGAGCTGCAGTTCCTCCTGGACCGGCTGGGAGAGGACACTGTGCGGCAGGACCTGAAGCAGGGAGTTGGTGGCTCAACGCCGCTGACAGATGCAGACCTCGCAGCTTTTGACGAGTTCTACAAGCTAGTGGGGCCAGACCGTGATCAAAACGTCAGGTTGGTTGACCAGTATGAAGAAGCATCTGTGCACCTCTGGGAGCTGCTGGAAGGGAAGGACAAGGCTGTGGTTGGAACAACGTACAAGGCACTGAGAGAGACTTTGGACCAGGTTCTGCTGAGTGGGTACTTTGACCGGGTTCCATCTCACCAAAACGgtgtgtgtgaggaggaggaggaggaagaggaagaagaagaagaagaagaagaggaggaggaggaggaggaggaggaagagccagcctcagcagcagcagcagcagcagcagctgaatCGTCAGAAGCAGGAGAGCAGGCTGCTGATCCAGAAACTGAAATAATTGAGGAATTTACAGAGCCCATTGCGATGGAAACAACAGAGTTTATAAACAGACAGTTCATTCCAGACGGCACATACAGCAGCAGTGAGAAGGAGCAAGGGGATGAGTGGACCACGGAAACAGAGGCAGTCAGTGCCATGCAGCAGCAGCCTATGCAGCCTTCGGCATCACCTGTTGCCCTGGAGACCCACCCCTTAAACCTAGCGTCTCCTGTGCCGCCTGCTGACCCCCTGGTCAGGAAGCAGGTGGTGCAGGACTTAATGGCACAGATGCAGGGAACGTACAACTTCATGCAGGACTCTATGCTGGAGTTTGACGGACAGCCCATTGATCCTGCCATTGTCTCAGCGCAGCCTATGAAACCCGCTCAGAACATGGACCTACCACAGATGGTGTGTCCCCCAGTTCACCCAGAGTCCCGGCTATCGCAACCCAACACTGTTCCTGTCCAACCTGAGCCCACACAGGTTCCTATCGTCTCTCCAACTCCGCCCCCTATGTATCAGACCTCACACACGCCAGATCCTCGACCCTCAACAGAAACCATCGACCCCATCCAGACCTCCATGTCCTTGTCGTCAGAGCAGCCTCCTCCCTCTACAGCTCTCCCACCTGTCCCTCAAACTCAAGTTTTCCAGCCTGTTTCCAAAGCTCCACACAGCAGTGGCATCAATGTCAACGCAGCACCATTCCAGTCAATGCAGACAGTGTTCAACCTCAATGCCCCAGTCCCACCAGCTAATGAGACAGAGGCTTTGAACCAGGCCAGCCAATACCAGAACAGCTACAACCAAGCCTTCAGCAGCCAGCCGCAGCATCCTGTGGAGCAGACAGAGATGCAGTCCGAACAACTGCAATCTGTAGTCGGTGCCTTCCATTCCCAAGACCAGTCAGGAGGCCATCCACAGCCTCCCCAGCAGGGCCCAGGCTTCGTCAGGCAGGGTCAGTCCTTCTACAACAGCAGAGGAATGCCTCGTGGTGGACCTCGCAACGCCAGGGGCATGATCAATGGCTACAGAGGCTCATCAAATGGATTCAGAGGTGGCTATGATGGTTATCGTCCTCCTTTTGCCAACAATTCAAACTCTGGTTATGGGCAGACTCAGTTCAACACACCTCGGGATTACTCAAATGGGAATTATCAGAGGGATGGTTACCAACCAAACTACAAGCGTGGAGCTGGTCAGGGACCCAGAGGAGTGTCAAGAGGCAGCTCTCAGGCAATACGATCCTGAAAAGGCCTTTCATAATGACTGTGACTGACTAACTTGCACCACACTGAAAATTCAAGAATGCATTTGCCCCAGCTCACTAatgtccttttttctttttttttgttcttcatcAGTGGTATTTTTCCTGTCTCTTAAATCAAAGTAATGCCTGCTTTGATATTTGGaaatattaaatcatttaaagtCTGAAACACAAGCTGAGCTGTAAATCCAATCATCGATTTACACAAGCAATGTGTTAAAATATTCCTGTAAACTTGAAAGATTTcataagttatttttttgtataaaaaaatgcACCTGCCACTGCTGGTCCAACCCTTGGGAGTTTATTCCCCTTCTCGattcttttgtcattttggtTCTTAAAAGGCGTTTTATGTTCAATGAGCTCCTGTTTCCTTGTTTGTAAATTGATGTTGCTTCATGAGTTTCAATAAAGTTGTGTTGCATACCCAT
>XM_039809702.1
TCTTTCTCACCGTCTCAGTTGTCGGTGAGGCCGGCGGGGCGGATCCCACGCtagagtgaaagagaaaataaagcaacacaacaaaaataacaacttggccgttttttttttacattcactaGCAAGCTCCCCTGTGGATATATACCATCAAGATGCCCTCAGCGATGAACGCAAATAGGACAGTGCAGTCTGCCAGCCCAGATGTGGGATCCGCTCCAGGGTCAATGATTAATTTTGCACTTGGTGGACAGTCCGAAGTTATGAAGCAAGTGCTGTGTGTCCTCGACAAGAAGGTCCGCAACATGGAGAAGAAAAAGAGTAAACTGGATGACTATCAAGTCAGGAAGGATAAAGGGGAGAGTCTCAATCAGGACCAGCTGGAGGCCCTCTCCAAATTCCAGGAAATCACAAATAACTTAGAATTTGGCCGAGAGTTGCAGAAGACGTTCATCACACTAGGACAAGATATCCAGAAGGTGGTGAAGAAGTCTGCACGGCGGGAGCAGCTGCAGCGGGAAGAGGCCGAGCAGAGGAGGCTGAAGACTGTTCTGGAGCTGCAGTTCCTCCTGGACCGGCTGGGAGAGGACACTGTGCGGCAGGACCTGAAGCAGGGAGTTGGTGGCTCAACGCCGCTGACAGATGCAGACCTCGCAGCTTTTGACGAGTTCTACAAGCTAGTGGGGCCAGACCGTGATCAAAACGTCAGGTTGGTTGACCAGTATGAAGAAGCATCTGTGCACCTCTGGGAGCTGCTGGAAGGGAAGGACAAGGCTGTGGTTGGAACAACGTACAAGGCACTGAGAGAGACTTTGGACCAGGTTCTGCTGAGTGGGTACTTTGACCGGGTTCCATCTCACCAAAACGgtgtgtgtgaggaggaggaggaggaagaggaagaagaagaagaagaagaagaggaggaggaggaggaggaggaggaagagccagcctcagcagcagcagcagcagcagcagctgaatCGTCAGAAGCAGGAGAGCAGGCTGCTGATCCAGAAACTGAAATAATTGAGGAATTTACAGAGCCCATTGCGATGGAAACAACAGAGTTTATAAACAGACAGTTCATTCCAGACGGCACATACAGCAGCAGTGAGAAGGAGCAAGGGGATGAGTGGACCACGGAAACAGAGGCAGTCAGTGCCATGCAGCAGCAGCCTATGCAGCCTTCGGCATCACCTGTTGCCCTGGAGACCCACCCCTTAAACCTAGCGTCTCCTGTGCCGCCTGCTGACCCCCTGGTCAGGAAGCAGGTGGTGCAGGACTTAATGGCACAGATGCAGGGAACGTACAACTTCATGCAGGACTCTATGCTGGAGTTTGACGGACAGCCCATTGATCCTGCCATTGTCTCAGCGCAGCCTATGAAACCCGCTCAGAACATGGACCTACCACAGATGGTGTGTCCCCCAGTTCACCCAGAGTCCCGGCTATCGCAACCCAACACTGTTCCTGTCCAACCTGAGCCCACACAGGTTCCTATCGTCTCTCCAACTCCGCCCCCTATGTATCAGACCTCACACACGCCAGATCCTCGACCCTCAACAGAAACCATCGACCCCATCCAGACCTCCATGTCCTTGTCGTCAGAGCAGCCTCCTCCCTCTACAGCTCTCCCACCTGTCCCTCAAACTCAAGTTTTCCAGCCTGTTTCCAAAGCTCCACACAGCAGTGGCATCAATGTCAACGCAGCACCATTCCAGTCAATGCAGACAGTGTTCAACCTCAATGCCCCAGTCCCACCAGCTAATGAGACAGAGGCTTTGAACCAGGCCAGCCAATACCAGAACAGCTACAACCAAGCCTTCAGCAGCCAGCCGCAGCATCCTGTGGAGCAGACAGAGATGCAGTCCGAACAACTGCAATCTGTCGGTGCCTTCCATTCCCAAGACCAGTCAGGAGGCCATCCACAGCCTCCCCAGCAGGGCCCAGGCTTCGTCAGGCAGGGTCAGTCCTTCTACAACAGCAGAGGAATGCCTCGTGGTGGACCTCGCAACGCCAGGGGCATGATCAATGGCTACAGAGGCTCATCAAATGGATTCAGAGGTGGCTATGATGGTTATCGTCCTCCTTTTGCCAACAATTCAAACTCTGGTTATGGGCAGACTCAGTTCAACACACCTCGGGATTACTCAAATGGGAATTATCAGAGGGATGGTTACCAACCAAACTACAAGCGTGGAGCTGGTCAGGGACCCAGAGGAGTGTCAAGAGGCAGCTCTCAGGCAATACGATCCTGAAAAGGCCTTTCATAATGACTGTGACTGACTAACTTGCACCACACTGAAAATTCAAGAATGCATTTGCCCCAGCTCACTAatgtccttttttctttttttttgttcttcatcAGTGGTATTTTTCCTGTCTCTTAAATCAAAGTAATGCCTGCTTTGATATTTGGaaatattaaatcatttaaagtCTGAAACACAAGCTGAGCTGTAAATCCAATCATCGATTTACACAAGCAATGTGTTAAAATATTCCTGTAAACTTGAAAGATTTcataagttatttttttgtataaaaaaatgcACCTGCCACTGCTGGTCCAACCCTTGGGAGTTTATTCCCCTTCTCGattcttttgtcattttggtTCTTAAAAGGCGTTTTATGTTCAATGAGCTCCTGTTTCCTTGTTTGTAAATTGATGTTGCTTCATGAGTTTCAATAAAGTTGTGTTGCATACCCAT

Function

symbol description
caprin1 Enables RNA binding activity. Predicted to be involved in negative regulation of translation and positive regulation of dendritic spine morphogenesis. Located in cell leading edge and cytosol.

NR:

description
caprin-1-like isoform X1

GO: NA

KEGG:

id description
K18743 CAPRIN1, GPIAP1; caprin-1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039809699.1 True 2719 mRNA 0.50 18 19799132 19812872
XM_039809702.1 False 2717 mRNA 0.50 18 19799132 19812873

Neighbor

gene id symbol gene type direction distance location
nat10 nat10 coding downstream 994 19788711 ~ 19798138 (-)
LOC120563329 NA coding downstream 37222 19753404 ~ 19761910 (-)
LOC120563845 LOC103375932,LOC108230170,LOC106526839 coding downstream 92005 19700154 ~ 19707127 (-)
trnap-agg_7 NA coding downstream 116215 19682846 ~ 19682917 (-)
parp16 parp16 coding downstream 169242 19623665 ~ 19629890 (-)
tspan18b tspan18 coding upstream 73038 19885911 ~ 19954815 (-)
cd82b LOC103355222 coding upstream 174910 19987783 ~ 20012310 (-)
LOC120564329 tp53i11 coding upstream 203296 20016169 ~ 20059123 (-)
si:dkey-29p10.4 NA coding upstream 262618 20075491 ~ 20083600 (-)
LOC120564471 LOC104960979,LOC103355225,LOC103150264,LOC103466396,LOC106915861 coding upstream 275255 20088128 ~ 20115384 (-)
G86566 NA non-coding downstream 22089 19774307 ~ 19777043 (-)
G86549 NA non-coding downstream 73939 19723973 ~ 19725193 (-)
G86543 LOC104950121,LOC106908881,LOC103380454 non-coding downstream 103317 19694995 ~ 19695815 (-)
G86540 LOC103375930 non-coding downstream 120043 19674923 ~ 19679089 (-)
G86517 NA non-coding downstream 181086 19609405 ~ 19618046 (-)
G86575 lmo2 non-coding upstream 8667 19821540 ~ 19823373 (-)
G86605 NA non-coding upstream 201465 20014338 ~ 20015812 (-)
G86652 reln non-coding upstream 428560 20241433 ~ 20241850 (-)
G86660 NA non-coding upstream 438017 20250890 ~ 20264206 (-)
G86686 NA non-coding upstream 589871 20402744 ~ 20461823 (-)
cep152 cep152,LOC104960117 other downstream 225444 19557452 ~ 19573688 (-)
G86402 LOC103363837 other downstream 410557 19387822 ~ 19388575 (-)
arpp19b arpp19,LOC100693429,LOC102791975,LOC106919339,LOC101065895 other downstream 481654 19315385 ~ 19317478 (-)
LOC120564082 svip other downstream 638645 19156758 ~ 19160487 (-)
G86194 tph1 other downstream 788216 19007196 ~ 19010916 (-)
G86638 NA other upstream 439766 20252639 ~ 20259259 (-)
LOC120564033 LOC103358331,LOC102195670 other upstream 994009 20806882 ~ 20829235 (-)
LOC120563850 NA other upstream 1064795 20877668 ~ 20887626 (-)
dnajb9a dnajb9,LOC100706374,LOC102775779,LOC102215328 other upstream 1556658 21369531 ~ 21372509 (-)
G87140 NA other upstream 1900169 21713042 ~ 21713554 (-)

Expression


Co-expression Network