snupn (snupn)


Basic Information

Item Value
gene id snupn
gene name snupn
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053119.1
NCBI id CM020916.1
chromosome length 42187026
location 11205454 ~ 11215493 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039809719.1
GGAACACAGTATTTCTGCACAAGTTCAGAAGTTTGCTCGGTAACTCCGGGTTAGTGTGCTGCATTTAGTCGGCCAACTAAAAGTCGCCTGGTGGGAAAAGATGACAACGTGACGTTTCAGCAGCAGCCTCCCTGAATGTccaagAGTCCCCATGGATGACCTGACCCAAGCCCTCTCGGCCAGCTTCGCTGTGTCCAAGGAGCCCAACACCACAGCCGCCCCTCACCCTCGGCTGGCCCAGTATAAGAGCAAGTACAGCGTGCTGGAGCAGAGCGAGCGGCGGCGGCGCTTTCTTGAACTGCAGAAGAGCAAAAGGTTAAACTACGTCAACCATGCGCGGCGTCTGGCTGATGGGGACTGGACGGGGGCAGACAGCGATGGAGAGGAGGACAAGGAGAAAACAGAGGAGGGGGGACAGGAGCAAGATGGccaaacagaggaagaggagatggAGATTGAGAGGAGGAAGCTGCCAAAACATTATGCAAACCAGCTCATGCTGTCAGAGTGGCTGGTGGATGTGCCATCTGAACTTGACACCGATTGGCTGATGGTGGTCTGTCCTATCGGGAAACGATCCCTCATTGTTGCCTCCAAGGGTTCCACTGCATCGTACACTAAAAGCGGCTACTGTGTGAACCGTTTTCCCTCCCTGCTGCCCGGCGGGAACCGACACAACTCGGCCATGGGTAAAGACTACACGATCCTGGACTGCATTTACAGCGAGGTGGACAGAACGTACTACATCCTGGATGTCATGTGCTGGAGAGGCCACCCGGTCTACGACTGCCCGACTGACTTCCGTTTCTACTGGCTCCAGTCCAAAGTCCAGGAGACGGACGGCCTATCAGAAATCGCCAAACGCAATCCTTTCCGGTTTGTGAGCCTCCAAAGCACAGATTGCACAGCAGAGCTGATTCAGAAAGCCCTGGCAGCGGAGTATAGCTTCGGCGTGGACGGTCTGCTCTTCTACCACCGGCAGACCCACTACACCCCCGGCAGCACCCCTCTGGTGGGCTGGCTTCGCCCCTACATGGTCACTGATATCCTGGGCATAGAGGTCCCCGTAGGACCCCTCACCACCAAGCCTGAGTACGCCTGCCACCAGCTGCAGCAGATCCTGGAACACAAGAAAACCTCAAGTGAAGTCCGCCCGGCCAACAGAAGTGGAGGCTATGAGTTAGAGTACCTGTCCACACCAAGCCTGGACAGTGGGGACACTCTCAACTTTCTGAATCAAAAGCCAATAAGGGAAGCTCACATGGAGATCTGAGTGGGAGGCTTAACGAGATGCAAATTGCTAACTCTGGGTTTCTGAGTGGTGGCGGCCCACATATGGCTCTTTAGAATATCTGCTGAATGGTTTTGCAGATCTGACCAATTGCAAAGCATGGCTAATTCTAATCCGGTACTGCTCAGGACGCCCTCAGAGTGCCGATTAGTAGAGCTATGctctatatgtgtgttttttaaatggctAAAAACTCTGCCATTTACATGTTGTACCTGTTGCAGAACTCTGAAACAGATTTGTTTCTTTGTGAGTAATTGCACAGTCATTAATCACTATAATTACTTAGTCACAGTGTGTCATGCAGCTCCCTTTCATAACACCATAGGTAGTCACGTGTTCAAAAAAATAGGACGAGAGGTTTCTTATGCGAGATATGCACAGTGCAGCACGGTAAATGTTGTGGTGAGGGGTTTTGCTCCTCTGCCCTTAAAACAGATCTCGCTTAAGAAACATCCTTACTGTTGTCAGTTGTTTGCAGACTTTCTAAAACTATCATCGATGCTTAGCCGGCAAAAACTTTTCAACAGATTATCATTCGTCATAATGGAGAGTTGCACTCAGTGATTTGGAAGTTGAGGTGTTGCTGACTGGTCAGACCCTGTGAGTTGGGAGCATGCTGAACAGCAGCAGCGACATGGacttttacaatttaatgttgaatttaaaattgtttaGATGATGTTTTTAAAGCGTATGTTtctcaataaatgtttttttttttttatcggcCTA

Function

symbol description
snupn Predicted to enable RNA binding activity and nuclear import signal receptor activity. Predicted to act upstream of or within protein import into nucleus and snRNA import into nucleus. Predicted to be located in cytoplasm and nucleus. Orthologous to human SNUPN (snurportin 1).

NR:

description
snurportin-1 isoform X1

GO:

id name namespace
GO:0006606 protein import into nucleus biological_process
GO:0006370 7-methylguanosine mRNA capping biological_process
GO:0061015 snRNA import into nucleus biological_process
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0004484 mRNA guanylyltransferase activity molecular_function
GO:0008565 obsolete protein transporter activity molecular_function

KEGG:

id description
K13151 SNUPN, RNUT1; snurportin-1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039809719.1 True 2026 mRNA 0.50 9 11205454 11215493

Neighbor

gene id symbol gene type direction distance location
sin3aa sin3a coding downstream 35531 11146670 ~ 11169923 (-)
wdr61 wdr61 coding downstream 95146 11101049 ~ 11110308 (-)
ireb2 ireb2 coding downstream 124149 11062695 ~ 11081305 (-)
sv2 LOC103366734,LOC105926231 coding downstream 165682 11027303 ~ 11039772 (-)
LOC120563889 NA coding downstream 233925 10963692 ~ 10971529 (-)
cspg4 cspg4 coding upstream 49675 11265168 ~ 11342369 (-)
LOC120564089 NA coding upstream 1037091 12252584 ~ 12258264 (-)
kras kras,LOC105900436,LOC103038241,LOC107595236 coding upstream 1337990 12553483 ~ 12563371 (-)
bhlhe41 bhlhe41,LOC102793158 coding upstream 1369818 12585311 ~ 12587491 (-)
itpr2 itpr2 coding upstream 1384888 12600381 ~ 12660168 (-)
G83974 NA non-coding downstream 144150 11061067 ~ 11061304 (-)
G83942 NA non-coding downstream 193052 11011298 ~ 11012402 (-)
G83941 NA non-coding downstream 194216 11010862 ~ 11011238 (-)
G83911 NA non-coding downstream 280436 10924503 ~ 10925018 (-)
G83854 NA non-coding downstream 664793 10537831 ~ 10540661 (-)
G84050 NA non-coding upstream 154906 11370399 ~ 11370649 (-)
G84051 NA non-coding upstream 179055 11394548 ~ 11394883 (-)
G84053 NA non-coding upstream 307216 11522709 ~ 11523000 (-)
LOC120563423 NA non-coding upstream 646868 11862361 ~ 11862788 (-)
G84082 NA non-coding upstream 671409 11886902 ~ 11887621 (-)
oaz2a oaz2,LOC104929548,LOC101470759,LOC102200097,LOC106531198 other downstream 292237 10823286 ~ 10913217 (-)
LOC120564603 NA other downstream 490609 10706219 ~ 10714845 (-)
scamp2 LOC103379909,LOC103364404,LOC104932119 other downstream 542776 10643916 ~ 10662678 (-)
G83826 mfge8,LOC104961859 other downstream 773310 10389244 ~ 10432144 (-)
tdg.2 LOC104948407,LOC103366417 other downstream 1025453 10174471 ~ 10180001 (-)
G84083 NA other upstream 672534 11888027 ~ 11888398 (-)
G84123 cat,LOC102293651,LOC102204975,LOC102775586,LOC102293936 other upstream 926030 12141523 ~ 12144546 (-)
G84530 LOC100696427,LOC106963151,LOC107104182,LOC107388919,LOC104956556,LOC102796452,LOC102202152 other upstream 2015124 13230617 ~ 13231095 (-)
prr5a prr5,LOC103371545 other upstream 2031335 13246828 ~ 13256093 (-)
LOC120564547 fbxl14,LOC103380143,LOC107388938 other upstream 2110480 13325973 ~ 13385205 (-)

Expression


Co-expression Network