LOC120564601 (rps17,LOC107389132,LOC108428414)


Basic Information

Item Value
gene id LOC120564601
gene name rps17,LOC107389132,LOC108428414
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053119.1
NCBI id CM020916.1
chromosome length 42187026
location 967695 ~ 984162 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039809734.1
TGTTGTTGTAGTTCCCTCCTCCGGCCGACAGGCGGCGCATGCGCAGCAGATCTCCACTTCTCCTTCGGTGGATTTAAACTTCCTTCGGAAGTCTGCTTGTCCTCTTCTACCAGGCCGATCCAACATGGGACGAGTCAGGACCAAGACGGTGAAAAAGGCCGCAAGGGTCATCATCGAGAAATACTACACCCGACTGGGCAGCGACTTCCACACCAACAAGAGGGTGTGCGAGGAGATCGCCATCATCCCCAGCAAGAAGCTCCGCAACAAGATCGCCGGGTATGTGACACATCTGATGAAGAGGATCCAGAGGGGTCCCGTCAGAGGAATCTCCATCAaactgcaggaggaggagagagagaggagggacaaCTACGTGCCAGAGGTGTCTGCGCTGGACCAGGAGCTGATTGAAGTTGATCCCGACACCAAGGAGATGCTGAAGCTGCTGGACTTCGGCGGTCTGTCCAACCTGCAGGTGACCCAGCCCACTGTCGGTATGAACTTCAAGCAGCCCCGAGGAGTCTAGGCGTCTGTAAAGTATCTTACTAATAAAAACCCTTTTGGGACAAAAAAAACC

Function

symbol description
rps17 Predicted to be a structural constituent of ribosome. Predicted to act upstream of or within translation. Predicted to be located in ribosome. Is expressed in several structures, including alar plate midbrain region; digestive system; eye; immature eye; and midbrain. Human ortholog(s) of this gene implicated in Diamond-Blackfan anemia 4. Orthologous to human RPS17 (ribosomal protein S17).

NR:

description
PREDICTED: 40S ribosomal protein S17

GO:

id name namespace
GO:0006412 translation biological_process
GO:0005840 ribosome cellular_component
GO:0003735 structural constituent of ribosome molecular_function

KEGG:

id description
K02962 RP-S17e, RPS17; small subunit ribosomal protein S17e

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039809734.1 True 580 mRNA 0.54 5 967695 984162

Neighbor

gene id symbol gene type direction distance location
LOC120563705 NA coding downstream 494971 448054 ~ 472724 (-)
LOC120563704 NA coding downstream 526153 381537 ~ 441542 (-)
LOC120563696 LOC102781631 coding downstream 678933 274762 ~ 288762 (-)
LOC120563420 LOC106928452,LOC103152536,LOC101167703,LOC103466313,LOC102224045,LOC107092639,LOC107396773,LOC105929669 coding downstream 745838 218926 ~ 221857 (-)
LOC120563419 LOC107396773,LOC105929669,LOC106928452,LOC101167703,LOC102224045,LOC103152536 coding downstream 764768 200495 ~ 202927 (-)
LOC120563352 LOC102080071,LOC102210666,LOC102302880,LOC101466024 coding upstream 84627 1068789 ~ 1088673 (-)
si:ch211-59o9.10 NA coding upstream 168090 1152252 ~ 1177870 (-)
LOC120563572 NA coding upstream 197344 1181506 ~ 1194264 (-)
sycp3 sycp3 coding upstream 211761 1195923 ~ 1203372 (-)
zgc:101783 NA coding upstream 265635 1249797 ~ 1264054 (-)
G81435 NA non-coding downstream 8100 938390 ~ 959595 (-)
LOC120563618 NA non-coding downstream 54922 902195 ~ 912773 (-)
G81153 LOC100196524 non-coding downstream 113598 844900 ~ 854097 (-)
G81150 NA non-coding downstream 128406 832377 ~ 839289 (-)
G81147 NA non-coding downstream 148653 816816 ~ 819042 (-)
G81447 NA non-coding upstream 22846 1007008 ~ 1007445 (-)
G81448 NA non-coding upstream 24720 1008882 ~ 1009249 (-)
G81450 NA non-coding upstream 31518 1015680 ~ 1109416 (-)
G81446 NA non-coding upstream 38420 1022582 ~ 1032944 (-)
G81456 NA non-coding upstream 78956 1063118 ~ 1064072 (-)
glsl NA other downstream 32351 806744 ~ 935344 (-)
LOC120563708 LOC106561532 other downstream 135951 719054 ~ 831744 (-)
LOC120563709 LOC103365992,LOC102289231 other downstream 167971 726856 ~ 799724 (-)
G81085 NA other downstream 405416 561663 ~ 562279 (-)
G81072 LOC106573129,LOC106561542 other downstream 435801 530249 ~ 531894 (-)
G81445 NA other upstream 19877 1004039 ~ 1045512 (-)
actr6 actr6 other upstream 220632 1204794 ~ 1235228 (-)
ambra1b ambra1 other upstream 262774 1246936 ~ 1768910 (-)
LOC120563578 LOC108241855,LOC108242154,LOC107380983 other upstream 362083 1346245 ~ 1374380 (-)
G81535 NA other upstream 486666 1470828 ~ 1472927 (-)

Expression


Co-expression Network