tspan18b (tspan18)


Basic Information

Item Value
gene id tspan18b
gene name tspan18
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053119.1
NCBI id CM020916.1
chromosome length 42187026
location 19885911 ~ 19954815 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039809814.1
GCTGCTGAGCCGCTCCGCTTTCAGTGACTTCACAAAACTGTTTGCATACCAATCTCCCCTCAACACTGCGTGCTTGTCCAAATTGGGATCGCAGATCTGGGAGCGGTGGATTGTATTAGTTGGACGCTGGGCACAATTCACCTCCGTGGACATCCCAGCTGAtcggcattttttttttgtttcatttcaatACTTCTCCAGCAGTCCCAGGCTTCTCAAATCGTCCTTTTAGTAACATTTCGCAGGGAAACATCTAGTCACAGACAGAGGTTTCGGCACTGAGCTGCGCTTTGAGCCCATgaaaacaggagaggagagagaaccgAGAGAAGTCATCAGCATCACCTGAACAAAGAAGAGGCACAAGCAGATACACATGgggcAGGGAGAGGCTTCAGCACGGGGGACAACCATGGAGGGGGACTGTCTCAGCTGCATCAAGTACCTCATGTTTGTCTTCAATTTCCTCATCTTTCTGGGGGGCTCTTTCCTCCTGGGAGTGGGAGTGTGGGTACTGGTGGACCCCACAGGATTCAGGGAAATTGTAGCAGCCAACCCGCTGCTATTCACTGGTGTCTACATCGTCCTGGGCATGGGAGGCATGCTCTTCCTTCTGGGCTTCCTTGGCTGCTGTGGAGCCATCCGCGAAAACAAGTGTCTGCTCCTCTTTTTCTTCATGctcatcctcctcatcttctTAGCAGAGCTGGCTGCTGCCATCCTGGCCTTCATATTTCGGGAGCATctgACCAGAGAGTACTTCACCAAGGAGCTAAAGAGACACTATCAGGGCTACAACAACACTGACGTCTTCACCTCCACATGGAATGCCATCATGACTACATTTGACTGCTGCGGAGTGAACAGCCCAGAGGACTTTAAGGACAGCCGGTTCAGGCTGATCAACCAAAATCATATGGTGCCAGAAGCCTGCTGCCAGCGTTCCAGTCAAACCGGGGAGTTGGCCTATATCGGCCAGGAGCAGTGCTTAACAGGCAATATGATGTTCCGCAATAACAAGGGCTGTTACTCTGCAGTAGTTGACTACTTTGAACTGTACATCTATGTGGCTGGAGCGCTGGCCATTGTGGTGCTGACCATTGAGCTCTTTGCCATGGTCTTTGCAATGTGTCTCTTTAGGGGAATCCAATAGAGCTGCTCCATCTGTGAACTTCTTTTAAGAAAAAAGGGAATTtagaagaaaagaacaaaatggACACTTGTAAATTTGTTGATCTCTTTTTCTATTGGCTAATTGGTAGAAAAACAAACTCTCAAACTCTTGTACTTCACAGCTGGACTTTTGAGGTACTGGgtggcaaaaaaacaacacgtgtgcgcacacacacacatacacacacacacacacacacacacacacacacacactcgcacacacacacacacaaaccatagAGAAAGTGGGAGATCAGAGACAAAACTGATGTAAAAAGAATTGTGTGTAAAGTGGAAACAGTAATTTTTTGGACCAGGTCTAGCACAGACTGGTGAAAGTGGACCAGGCATGAGGACCAGGTGAAGCCTGAGCAGAAGGCACTGCACTGACTTTTGGATGAAGACTATTTATATTAAGTAAAGTTGgcttaactgtaaaaaaaaagagagaaaaaaagaagtgttttATATACACTTTGGCTGTTACCTTTTTCCTGCTCATACTGTATAGTGTAACACTCCCTCCCACCGTACGCCTTTTTTACAGCCACTCTTCTgctgtattattgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtactggatGCTGTTTTTGAATGTGTATGAACTAGGTTGTGAGCATGTGCGTGTGGCTCTTCATGACCCCTCCCAAGCTTTAAAGCCAACCTctgatttttttctatttgtatgGTGATGTTTATTGCAGTAGTGGTTATAATGTGGTTTTAGGTGGTgaaatgtatgtgtatgcatttgTATTAGATTCTTGAAAAGTCAGTGACATAAATGGCATTCTAAATga
>XM_039809815.1
CGCTCTGCAACAAACTCTGAGCCCATgaaaacaggagaggagagagaaccgAGAGAAGTCATCAGCATCACCTGAACAAAGAAGAGGCACAAGCAGATACACATGgggcAGGGAGAGGCTTCAGCACGGGGGACAACCATGGAGGGGGACTGTCTCAGCTGCATCAAGTACCTCATGTTTGTCTTCAATTTCCTCATCTTTCTGGGGGGCTCTTTCCTCCTGGGAGTGGGAGTGTGGGTACTGGTGGACCCCACAGGATTCAGGGAAATTGTAGCAGCCAACCCGCTGCTATTCACTGGTGTCTACATCGTCCTGGGCATGGGAGGCATGCTCTTCCTTCTGGGCTTCCTTGGCTGCTGTGGAGCCATCCGCGAAAACAAGTGTCTGCTCCTCTTTTTCTTCATGctcatcctcctcatcttctTAGCAGAGCTGGCTGCTGCCATCCTGGCCTTCATATTTCGGGAGCATctgACCAGAGAGTACTTCACCAAGGAGCTAAAGAGACACTATCAGGGCTACAACAACACTGACGTCTTCACCTCCACATGGAATGCCATCATGACTACATTTGACTGCTGCGGAGTGAACAGCCCAGAGGACTTTAAGGACAGCCGGTTCAGGCTGATCAACCAAAATCATATGGTGCCAGAAGCCTGCTGCCAGCGTTCCAGTCAAACCGGGGAGTTGGCCTATATCGGCCAGGAGCAGTGCTTAACAGGCAATATGATGTTCCGCAATAACAAGGGCTGTTACTCTGCAGTAGTTGACTACTTTGAACTGTACATCTATGTGGCTGGAGCGCTGGCCATTGTGGTGCTGACCATTGAGCTCTTTGCCATGGTCTTTGCAATGTGTCTCTTTAGGGGAATCCAATAGAGCTGCTCCATCTGTGAACTTCTTTTAAGAAAAAAGGGAATTtagaagaaaagaacaaaatggACACTTGTAAATTTGTTGATCTCTTTTTCTATTGGCTAATTGGTAGAAAAACAAACTCTCAAACTCTTGTACTTCACAGCTGGACTTTTGAGGTACTGGgtggcaaaaaaacaacacgtgtgcgcacacacacacatacacacacacacacacacacacacacacacacacactcgcacacacacacacacaaaccatagAGAAAGTGGGAGATCAGAGACAAAACTGATGTAAAAAGAATTGTGTGTAAAGTGGAAACAGTAATTTTTTGGACCAGGTCTAGCACAGACTGGTGAAAGTGGACCAGGCATGAGGACCAGGTGAAGCCTGAGCAGAAGGCACTGCACTGACTTTTGGATGAAGACTATTTATATTAAGTAAAGTTGgcttaactgtaaaaaaaaagagagaaaaaaagaagtgttttATATACACTTTGGCTGTTACCTTTTTCCTGCTCATACTGTATAGTGTAACACTCCCTCCCACCGTACGCCTTTTTTACAGCCACTCTTCTgctgtattattgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtactggatGCTGTTTTTGAATGTGTATGAACTAGGTTGTGAGCATGTGCGTGTGGCTCTTCATGACCCCTCCCAAGCTTTAAAGCCAACCTctgatttttttctatttgtatgGTGATGTTTATTGCAGTAGTGGTTATAATGTGGTTTTAGGTGGTgaaatgtatgtgtatgcatttgTATTAGATTCTTGAAAAGTCAGTGACATAAATGGCATTCTAAATga

Function

symbol description
tspan18 Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane.

NR:

description
tetraspanin-18 isoform X4

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K17353 TSPAN18; tetraspanin-18

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039809814.1 True 2100 mRNA 0.46 9 19885911 19954448
XM_039809815.1 False 1826 mRNA 0.46 9 19885911 19954815

Neighbor

gene id symbol gene type direction distance location
caprin1b caprin1 coding downstream 73038 19799132 ~ 19812873 (-)
nat10 nat10 coding downstream 87773 19788711 ~ 19798138 (-)
LOC120563329 NA coding downstream 124001 19753404 ~ 19761910 (-)
LOC120563845 LOC103375932,LOC108230170,LOC106526839 coding downstream 178784 19700154 ~ 19707127 (-)
trnap-agg_7 NA coding downstream 202994 19682846 ~ 19682917 (-)
cd82b LOC103355222 coding upstream 32968 19987783 ~ 20012310 (-)
LOC120564329 tp53i11 coding upstream 61354 20016169 ~ 20059123 (-)
si:dkey-29p10.4 NA coding upstream 120676 20075491 ~ 20083600 (-)
LOC120564471 LOC104960979,LOC103355225,LOC103150264,LOC103466396,LOC106915861 coding upstream 133313 20088128 ~ 20115384 (-)
bncr NA coding upstream 297984 20252799 ~ 20255338 (-)
G86575 lmo2 non-coding downstream 62538 19821540 ~ 19823373 (-)
G86566 NA non-coding downstream 108868 19774307 ~ 19777043 (-)
G86549 NA non-coding downstream 160718 19723973 ~ 19725193 (-)
G86543 LOC104950121,LOC106908881,LOC103380454 non-coding downstream 190096 19694995 ~ 19695815 (-)
G86540 LOC103375930 non-coding downstream 206822 19674923 ~ 19679089 (-)
G86605 NA non-coding upstream 59523 20014338 ~ 20015812 (-)
G86652 reln non-coding upstream 286618 20241433 ~ 20241850 (-)
G86660 NA non-coding upstream 296075 20250890 ~ 20264206 (-)
G86686 NA non-coding upstream 447929 20402744 ~ 20461823 (-)
G86761 NA non-coding upstream 744000 20698815 ~ 20699637 (-)
cep152 cep152,LOC104960117 other downstream 312223 19557452 ~ 19573688 (-)
G86402 LOC103363837 other downstream 497336 19387822 ~ 19388575 (-)
arpp19b arpp19,LOC100693429,LOC102791975,LOC106919339,LOC101065895 other downstream 568433 19315385 ~ 19317478 (-)
LOC120564082 svip other downstream 725424 19156758 ~ 19160487 (-)
G86194 tph1 other downstream 874995 19007196 ~ 19010916 (-)
G86638 NA other upstream 297824 20252639 ~ 20259259 (-)
LOC120564033 LOC103358331,LOC102195670 other upstream 852067 20806882 ~ 20829235 (-)
LOC120563850 NA other upstream 922853 20877668 ~ 20887626 (-)
dnajb9a dnajb9,LOC100706374,LOC102775779,LOC102215328 other upstream 1414716 21369531 ~ 21372509 (-)
G87140 NA other upstream 1758227 21713042 ~ 21713554 (-)

Expression


Co-expression Network