bhlhe41 (bhlhe41,LOC102793158)


Basic Information

Item Value
gene id bhlhe41
gene name bhlhe41,LOC102793158
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053119.1
NCBI id CM020916.1
chromosome length 42187026
location 12585311 ~ 12587491 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039809860.1
GCGCTCTAACCACATCACCGACGGCTTTGCAAAGTGGCAGCTCAGAGAACTATAGATATCAGTCTGAAGCGAAGCTCCACCGGAGGACACGCACTGTGCATCATCTCCCCCAGCCGTCCGTGTGTGGGTCGTAGAATAACAAACATTCCCTGAAGAAGATCGGGAGCGGACAACCAGCAGCAGAGCAGTGATGGATGAAAGAATACCGCATTTACAGGACAGACAGTTCATGGAGCACGCTGATTTTTTGGGGGTGGATTACCCCTCTCTCTACATGTGCAAATCCAAAAGAGGAATAAAACGAGAGGATGGTGGGAAGGATGCATACAAGTTACCACACCGGTTGatagagaagaagaggagagacagaatcAACGAATGTATTGGCCAGCTTAAGGATTTGTTACCCGAACATCTGAAGCTGTCGaCGCTCGGGCATTTGGAGAAAGCAGTTGTCCTGGAGTTAACGTTGAAACATTTAAACGCACTGActgctgtcactgagcagcAGCATCAGAAGATTATAGCGCTGCAGAATGGGGACCGGTCGATGAAATCTTCCATTCATGCAGATCTGGATGCGTTCCACTCCGGGTTCCAGGCCTGTGCCAAAGAGGTCTTGCAGTACCTGAGTCAGTTTGAGAACTGGACGACGCGAGAGCAGAGGTGCGCGCAGCTCATCAGCCACCTTCACAAGGTGTTGGCGCAGTTCCAGTCCGGCGCGCCGCCGCTCCAGCACCAGCTACCCGCCGGGGACGCACAGGATGGCCACAAAGCCGACAGCCAGGCCAACTGTGTCCCGGTCATCCAGAGGACCCAAGGCGGGGAGCTTAACGAGAATGACACAGACACGGACAGCGGATACGGGGGCGAGGCTGAAAAGGGCGACGGCAAAGATAAAGAATGTGAGCGCAATAAGGCGCAGGGATACAAGGCAGTGAAGATCAAGCAAGAGTTTGGAGATGATCGCGCtgccaaaaaaacaaagatgaaCTGGCCTGGGAACGGGTTAGGTGGCACAGACCCCACCAGACCCGATCTGGCGTTTATGAACTCTCTGATGGGAATAAGCAGTGTGGGACAGCAGACGCCTATTTGCATGCCTTTCTACTTCATCAACCCCTCGGCCGCGGCGTCTTACATGCCTTTTTTCGACAAAAGCAACATTGAAAAGTACATGTACCCAGCGGCAGCTCTGGCATCCCCTTTCCCCTGGCTGTACCCTGCACACGCGTCAGCAGCGGCGGCCGCGGCGGCTGCTGCAGCTCTACCCGGCTTGTCTGTGCACTTTGGAGCCTCTGCTCAGTCCAAGGACTGCCACAGTCCAGACAGCGACGAGTCACACGAGGCTGAGTTAGGTTCACCTAAGGAGCGCGAGGAAAGTCCCGCGAGTGACGACGGGGAGGATGACGTAGCTGATGCGTCCCAAGAAAGCAAGAATAGCCCACATGATCAGTTTTCTGCTTGTCAGACGAGCTAATTTGTCTGTTACCTTTCcgtgcattctttttttttt

Function

symbol description
bhlhe41 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Acts upstream of or within negative regulation of transcription, DNA-templated; response to cold; and sleep. Predicted to be active in nucleus. Is expressed in several structures, including brain; cardinal system; pleuroperitoneal region; shield; and swim bladder bud. Orthologous to human BHLHE41 (basic helix-loop-helix family member e41).

NR:

description
class E basic helix-loop-helix protein 41-like

GO:

id name namespace
GO:0045892 negative regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0003677 DNA binding molecular_function
GO:0046983 protein dimerization activity molecular_function

KEGG:

id description
K03730 BHLHB3, DEC2; class B basic helix-loop-helix protein 3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039809860.1 True 1516 mRNA 0.54 5 12585311 12587491

Neighbor

gene id symbol gene type direction distance location
kras kras,LOC105900436,LOC103038241,LOC107595236 coding downstream 21940 12553483 ~ 12563371 (-)
LOC120564089 NA coding downstream 327047 12252584 ~ 12258264 (-)
cspg4 cspg4 coding downstream 1242942 11265168 ~ 11342369 (-)
snupn snupn coding downstream 1369818 11205454 ~ 11215493 (-)
sin3aa sin3a coding downstream 1415388 11146670 ~ 11169923 (-)
itpr2 itpr2 coding upstream 12890 12600381 ~ 12660168 (-)
eea1 eea1 coding upstream 102202 12689693 ~ 12712352 (-)
nudt4a nudt4,LOC100689726,LOC101064765,LOC102791978 coding upstream 124962 12712453 ~ 12727343 (-)
ube2na ube2n coding upstream 142864 12730355 ~ 12736681 (-)
nr1h4 nr1h4 coding upstream 154651 12742142 ~ 12758791 (-)
G84130 NA non-coding downstream 379780 12205241 ~ 12205531 (-)
G84129 LOC104959604 non-coding downstream 384476 12177943 ~ 12200835 (-)
G84127 NA non-coding downstream 415116 12169668 ~ 12170195 (-)
G84118 NA non-coding downstream 415664 12160379 ~ 12169647 (-)
G84115 NA non-coding downstream 422291 12157250 ~ 12163020 (-)
G84244 NA non-coding upstream 99543 12687034 ~ 12687287 (-)
G84243 NA non-coding upstream 99992 12687483 ~ 12688635 (-)
G84294 NA non-coding upstream 242865 12830356 ~ 12834571 (-)
G84320 rfx4 non-coding upstream 298172 12885663 ~ 12885917 (-)
G84321 NA non-coding upstream 299100 12886591 ~ 12886903 (-)
G84123 cat,LOC102293651,LOC102204975,LOC102775586,LOC102293936 other downstream 440765 12141523 ~ 12144546 (-)
G84083 NA other downstream 696913 11888027 ~ 11888398 (-)
ptpn9a ptpn9 other downstream 1324350 11173553 ~ 11260961 (-)
oaz2a oaz2,LOC104929548,LOC101470759,LOC102200097,LOC106531198 other downstream 1672094 10823286 ~ 10913217 (-)
LOC120564603 NA other downstream 1870466 10706219 ~ 10714845 (-)
G84530 LOC100696427,LOC106963151,LOC107104182,LOC107388919,LOC104956556,LOC102796452,LOC102202152 other upstream 643126 13230617 ~ 13231095 (-)
prr5a prr5,LOC103371545 other upstream 659337 13246828 ~ 13256093 (-)
LOC120564547 fbxl14,LOC103380143,LOC107388938 other upstream 738482 13325973 ~ 13385205 (-)
mafb maf,LOC104941368,LOC104940469,LOC101071510,LOC101484138,LOC103380135,LOC102219741,LOC106520304 other upstream 986340 13573831 ~ 13618786 (-)
zgc:77752 NA other upstream 1443613 14031104 ~ 14037716 (-)

Expression


Co-expression Network