fan1 (fan1)


Basic Information

Item Value
gene id fan1
gene name fan1
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053119.1
NCBI id CM020916.1
chromosome length 42187026
location 19417626 ~ 19423222 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039809862.1
TCCGCTGGTTAAGCCTGAGAAGCGAGAACGAGAAGCGGGATTGTTATTATCGTGAGCGCTCCTCTACGGTATGTTGGCTCATGTTTTGACATTTGGCAGTcttttatattaatgttttgtCGTTTTTCTAAGAAGCAACAAACTACAAATGTGTGACAATATAAAATGAAGCGTTTCTTTTTGAGCTAACGTAAGAGCTAGAGCTATATCATTAACGTTATCCATCGACCCTGTCCACACCGATAATTCTCCTCAGAGTAACGTTATGCAACAAAGAAAATCTGCTAAAAACTTAGCAGCTTTTCATCGAGCAGCACAACTTCCGCCTGCATCATGACCGAGAGAGCCAACAGAGACAAACTCAAGCGAAGTTTGTCATTGTCCAAGAGTAAGAAGAAAGGAAATGTCAAAAGTGGGATTTCTGCCAGTGCTGCCACCACAACTCCTATCACCTCATTCTTCAGCAGCCAGCCTCCACCTAAACTGTCCTGCCCTCTGTGTGCCCAGTTGGTACCAAGATTCAAGATCAATGAGCACATTGATTTGCAATGTCAGAACTTTGAGAGAGGAGACAGCATTGTCGCCTCAGCAAGTGATAGTGTTTTGCCAAGCATCCAGCTGTCACCCAGAAGGAATCCCCCAAAGTCTCCAGAGCTGGATCCAAAGAAGGAAGAAGAGATCAAAGAGACAAGCCCCTATTTCAAAAGGAATAATTCTCAGCAGGCACCACGGGAGATAAAAGGAAAAAGTGTGGTCAGGACCATTGACCTGGGAAGTCTCTCCTCCAAGTTATCAATGAAATCTCATAAGGTATCTGAGAGGACACAGAAGGAGGATAAACATGCCAAGATGTGTCCTGAAAACAAGATATATTCTTCTGAGGCACTTAGCAGCTCACAGAAGGAAAATCAGAGTTTAGAAGACAAAAAAGACTACGTGGCAGTCATTGACCTTACACAAACTAGTGCAGACACTCCATTGGAAGATCTCACATGTTCAGACAAAGGATGTCATCTTGAATACAAACCATTTAAATCAGAGACTTTTGAAAAACGAGTTGCTCCAAAGCTGcgctcttcttcctccaaactaTCAAAGAGAAAGATGGGAACAACTTCCACTGGCAGGTCTGATTCcagaaagaaagcaaaataTGAGGGGAGCAGCAGGGAGCCAGAGGAGGTGTTGTCTAGTTGTCTAGTTGTGGCAGAGATGACTGATACGGACCAGCTTAAAACTGAGGTACCTTCTACCACCCTTTGTGACCACCATCTGAGTTCAGAGGAAACATATGAGAAAGGTGCGGCAGCGATCAATAGTAATTCACTGGCAAAGTTGGGTGCTGAGAACATCAGCAGTGACCAGGTTGTCGAGAGCTCGCATCCCCAATGGCTTCCCTACTACCTCCGTAACTTCCGGACTGTACTACAGGCTGTCCTGGAGAATGAGGACGACAGGTCATTgtttaaccaggatgacatgtCACTCGTACATGCATTTGAGAAACTCTCAGTCATGGGGCAGAAGCTGTATGTCAGACTCTTTCAGAGGAAACTGAAGTGGCTCCAAGTAAATAAACTGGATTATGAAGAGATATGCAGTGATCTGGGACCTGTTGCTCAGGAGCTGGTTCAAGGTGGTTTTCTACAAACAGAGAGCGACCTTCAGGACTTGGGGGAGGCTCTGGAACTCCTGCCTGCTCCTGAACTCAAAGCTCTGGCTAAGACTTTCCATCTGGGTAATTCTGGGACTCAGAAACAGCAGCTAGTGGACGGACTTCTCCGTCTTAGCAGGCAAAAGTCCTTCTTCTCTCTGACCCCTGCTCAGAACAACATTGGGGCTGTTATTCTCAAAAGGGCAAAGCAGCTGGCAAGTTCCTGTGTGCGCCTGTGTCGTGGTCCTCGGGCTGTCTTTTCTCGtattcttctcctcttctctctgacgGACACCatggatgaggaggaggtggcAGGTGGTGGGCAGAGCCAGCTCTTCACCATTCTGCTGGTTAACTCAGGACGTCTGGCCTTTCCAGACTACACAGTGCAGCGCACAGCCAAGGTGTTCCAGGACAGAGAGGATCTTATCAGATATGAAGCATCCATGCGAGCCCTGCAAGAGGTAGTCTCAGCTATGCAGGGAGGTCAGTGGGAAGAGGCCATGGAGCTTTACACTGCTGCCAAAAGTGTCTGGCAGGAGCTGAGGAAAAACCATGACCTCAgTCACCAGGAGGAGCTGCCTGTGTTTCTGCGCAGCTTCACTACAGGATGGGCTTATACTCGGATCTTATCCAGAGGGGTAGAGATCTTGCAGAGGCTACGTCGCTATGAGGAGGCAGTAGAGGAGCTGCAGTCCTTACTGTTGCAGTCCATTTGCTGTCCTGACAGCCGAGGACGATGGTGGGACAGACTGGCGCTAAACCTTCACCAGCACCTAAAACAACCTGAGCAAGCTATTTGTGCTATCAGAGATGGGCTGTCAGACCCTTTGGTGCGAACTGGACATAAACTTTCTCTTCATCAGAGAGCTGTGAGGATGAAAGAGTCTGCCAGCTTGAAGAAGTATCACCTGCACCTAAAAGACCTGCCCACTATTCAAGTCCAAGATGTCACACATGTGACCATCCGGGGACAGTTGTTCCCTCATGAGGGGGGCATGGGGAAATCGAAGTTCCTTTTACAAGCAAATGGAGAGGGGGAAGAGGGTGCTAATGCCACTGTTATATGCTCTGTGGAAGAGCTGTCTTTAGCACATTACCGTCAAGAAGGCTTTGACCAAGGGATCCATGGAGAGGGCTCAACATTCTCAACCTTGTTTGCTCTTCTGCTATGGGACATCATTTTTATGGAGGGTATTCCAGACGTTTTCAGAAATCCATACCAGACATGTCCACTGGATCTGTACACTGACTGTTTCTATGAGAACAGAAAAGAGGCGATCGATGCTCGTGTGCAGTTACTAAGGGAGTCATCTGTGGAAACTCTGCATGACATGTTAGAAGATGTCTGGACCTCCCAGGAGGGTAAAGTGTGTTCACTGGTCAACTGGGAGCTTTTCTCATCCCTTCACCAGGCGCAGTCTCTCGTGTCATGCCTGGGTGGAGCCTTCTTAGGAGGGGTAATAAGACGAATGTCGAAAGACTACAGACACTGCCGTGGAGGTTTGCCTGATCTAGTGGTGTGGAACACCTCAAACAACAGTTACAAGCTGGTGGAGGTGAAGGGGCCCACTGATCGGCTGTCCCAGAAGCAACAGATATGGCTGGATGAGCTGCAGAAGCTGGGGGCTGATGTGGAGGTGTGTCACGTGACAGCTactggagccagaggagctcgTCTGGAATAAATAGACACAGGAAAACTGACTGATAAGACTTTGTTGCTAATTATTCAGAGTGTGTGTAAAATGGAAACCTCAGCACACAGAAACTCTGAATAAAATCTGGGAGCTTTT

Function

symbol description
fan1 Predicted to enable flap-structured DNA binding activity; nuclease activity; and ubiquitin-dependent protein binding activity. Predicted to be involved in double-strand break repair via homologous recombination; interstrand cross-link repair; and nucleotide-excision repair, DNA incision. Predicted to act upstream of or within DNA repair. Predicted to be active in nucleus. Is expressed in female organism. Human ortholog(s) of this gene implicated in karyomegalic interstitial nephritis. Orthologous to human FAN1 (FANCD2 and FANCI associated nuclease 1).

NR:

description
fanconi-associated nuclease 1

GO: NA

KEGG:

id description
K15363 FAN1, MTMR15; fanconi-associated nuclease 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039809862.1 True 3453 mRNA 0.48 13 19417626 19423222

Neighbor

gene id symbol gene type direction distance location
LOC120564004 LOC103363835,LOC104931412,LOC104960084 coding downstream 1689 19397238 ~ 19415937 (-)
LOC120564015 rfx7,LOC100694937 coding downstream 59382 19341610 ~ 19358244 (-)
LOC120564050 LOC104931415,LOC103363123,LOC104960120 coding downstream 78511 19323799 ~ 19339115 (-)
rsl24d1 rsl24d1 coding downstream 94955 19318887 ~ 19322671 (-)
LOC120564048 LOC103363116,LOC100694407,LOC102201394 coding downstream 103963 19296993 ~ 19313663 (-)
duox2 duoxa2 coding upstream 11027 19434249 ~ 19436656 (-)
zgc:101540 LOC100694233,LOC102305394,LOC102779799,LOC101472508,LOC102208223 coding upstream 114280 19537502 ~ 19547183 (-)
LOC120564200 NA coding upstream 125840 19549062 ~ 19557179 (-)
atp8b4 atp8b4 coding upstream 158565 19581787 ~ 19598362 (-)
parp16 parp16 coding upstream 200443 19623665 ~ 19629890 (-)
G86400 LOC101161482 non-coding downstream 33619 19383619 ~ 19384007 (-)
G86395 NA non-coding downstream 42687 19371007 ~ 19374939 (-)
G86394 NA non-coding downstream 48570 19368759 ~ 19369056 (-)
G86337 pfcyp19b-tstr non-coding downstream 149189 19268211 ~ 19268437 (-)
G86253 NA non-coding downstream 285460 19131851 ~ 19132166 (-)
G86430 NA non-coding upstream 102465 19525687 ~ 19527137 (-)
G86432 NA non-coding upstream 107354 19530576 ~ 19531622 (-)
G86519 NA non-coding upstream 124938 19548160 ~ 19548961 (-)
G86529 sqrdl non-coding upstream 178259 19601481 ~ 19603243 (-)
G86517 NA non-coding upstream 186183 19609405 ~ 19618046 (-)
G86402 LOC103363837 other downstream 29051 19387822 ~ 19388575 (-)
arpp19b arpp19,LOC100693429,LOC102791975,LOC106919339,LOC101065895 other downstream 100148 19315385 ~ 19317478 (-)
LOC120564082 svip other downstream 257139 19156758 ~ 19160487 (-)
G86194 tph1 other downstream 406710 19007196 ~ 19010916 (-)
syt7a LOC102215913,LOC101470916,LOC102782335,LOC103466506,LOC103141308,LOC107388681,LOC100690092 other downstream 721528 18614588 ~ 18696098 (-)
cep152 cep152,LOC104960117 other upstream 134230 19557452 ~ 19573688 (-)
G86638 NA other upstream 829417 20252639 ~ 20259259 (-)
LOC120564033 LOC103358331,LOC102195670 other upstream 1383660 20806882 ~ 20829235 (-)
LOC120563850 NA other upstream 1454446 20877668 ~ 20887626 (-)
dnajb9a dnajb9,LOC100706374,LOC102775779,LOC102215328 other upstream 1946309 21369531 ~ 21372509 (-)

Expression


Co-expression Network