rpgrip1l


Basic Information

Item Value
gene id rpgrip1l
gene name NA
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053119.1
NCBI id CM020916.1
chromosome length 42187026
location 1865668 ~ 1905302 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039809879.1
ATTCCCCACAATTCTCTTCACTCGGCGCATGCGTAGTAGCATCATAACGACATGAACTGTTATGTTTTCAGTAGCAACCGTTACCTTGGACTGAATAAAGTCGTTTTAAAAGATTGAAATATGTCCACTCTGATTGATGAGACAGCAGCAGATGTGCCAGTCAGAGACTTCACAGTGAACCTGTCCCGACTCGCAGCAGAGTCATCGGTGTATCAAAATGCTCGGGCGCGACAGGATGTCTCGCGGGTGTCCAGGGAGGAGCTGGAGGACCGGTTCCTGCGCCTCCACGAGGAGACGCTGCTCCTCAAAcagcacattcacacacaggaCGACAAGATCAAGAAGCTGGGCACTAAGCTGATGAAGCTGGTGAAGGACCGGGGCCGTATGGAGCAGCTGGCGGCGGGCGGGCGGTCTCCGGCCCCCAGGGTCCGGGACGTGGAGATGGAGGAGATGATGGAGGATCTGCAGGAGAAAGTGAGGGGACTACAGGCGGAAAACGAGGGCCTGAAACAGCGCCTCCTGGTGGCCAAGCAGCAGCTCATCAACTCGCAGGGCAGGAGACCGGCGCCGTACGGCCGCGTCCCGTCACGGGTTAACTCGGGGGTCAGGAAGCAGCGGgactcctctccttctccaacAAGGCCCAAAAGCACCCGTTCGGAGGGAGGCGGGAGACCTCCGACCGGTCTCTTACCCCGATTCGGACACAGCCTGCTGGAGGAGGCGAGGGCCGAGGTCCGCAACCTGGAGAACGTGATCGAGCTCCAGCGGAGCCACATGGAGGAGATGGAGGCCGCGGCCGAGCTGCTGAGGGAAcagctgaggaggaaggaggctGAATATGAGGAGAGACTTCTGCAGGTCCGACAGCAACAGACCTCCAAACTCAGGTCGCATGTCGACGGCAACGTGACGATGATCAAACTGCAGAAGCAGCTGGCTGAACGGGCCAACGGTGTCACAGAGCTCGAGGGGCGATTTCTACAACTGCAAGAGagTCAGAGGACGCTGAAGCTGAGTCACGACGCAGCGATGCAGAAGGTGGATGAGCTGTCGGCTCAGCTGAAAGACGAGCGGCTGAAGAGTTTGGACCTGGAGAAACGGCTGCAGAGCTCCACCGTATCGGGGAAGAAGCTGGAGCAGctgcaggagagGATCAGTGAAGTGGAGCAGGAGCGAGATCTGCTGAAGGACAACAATGAGAAACTCATCAACAGTGCCTTCGACGTGTCTCGACAGCAGAAATGGCAGATCCAGGAGCAGCAGCTGAAGCTGCAGATCGCCCAGCTAGAGACTGCGCTGAAGGCCGACCTCGTTGACAAAAACGAAATCCTCGACAAGATTAAGGCTGAGAGAGACACAAATGAGAAGCTGACAGAAGAAAATCAGAAACTTCAAATCCAGATTCTGgagcagaagcagcagctggAGGAACTCAACGGCCGTTTGAAAGTCTACAGCAGGGAGAAGGACTACGACGCGGCCGAACTCACGGAGGCGCTGCTGCTCATTAAGAAGCGTAAAACCCAGAGGAGCGGCGATCTGGGCTTCCTGAAGGAGGTGGAGGACGTAGCGAGCGGCGGCGCTGGCGATGGCAGCACGGAGAGGGCCGTCCGAGAGCTGCGAGCCGCTCACGCCGAAACCATCCAGGAACTGGAGAAGACCAGAAACATCCTCAGCATGGAGAGCAAGATCAGCAAAGACTACAAGGCGGAGCTGGAGGTTGTGTTGAAGAAGATGGACGGTAACAAAGTGGAGTATGAGCAGAAGCTGGAGCGACAGGCTGCTCTGCTCGACACCAGGGCCGCCAAGATCAAGAAACTGGAAGCTCAGCTCCGAGACATTGCCTACGGCACCAAAACCTTCGTCTCCAAACAGGACGTCACCGAGGAAGACGAGGCCGACAGGTTTGATGAAAGTCTTCGCCTGGAGAGCGGAGAGAACCTTATGGAGCTTCAGATAGTCAGCGCCGCGCTGTCTCCGTCCGCCCTGCAGGCCCTGGGTGATGGCGAACCCTCCACCTTCTGCACCTACGCCTTCTATCACTTTGAGCTGCACGCCACGCCGGTGGCGGCGGGCCGGACGCCGGCGTACGGCTTCACGTCCCAGTACGTGGTGAGTGTGGACGAGCTCTTCCTGGAGTATCTGCAGCGAGGCTGCGTGAGCGTGGAGCTGCACCAGGCGCTCGGTCTGGACTGGAGGACGCTGGCCAGAGCGCAGATTAGGCTGCAGGCGCTCTTGGAGCGAGACGGGAAAGTCCACGGGACTGCGCCGCTGGTCGGAGCGTCCGATGATTCCCGGTCCTTTGGCTCCGTGGATTACTGGCTGCAGCTGAGGCTCCCGATGACAGAGACCATCCGTCTGTATAAAGAGAAGCTGAAGGCTGCGGGCTACAGCCACACCGCTTTGAACCAGGACGCACAGCCGCCTGGCGTCTGGAACGAGCTCTACGTCACGGTGCAACGCTGCAGAGACCTAAAGACGCCCAGACTCTCAGAGCAGCCGAGCCCCTACGTGGTTTACAAGTTCTTTGACTTCCCCGACTACCCGACCGACACCGTCCACGACTGCTACGAGCCGCGCTTCAACGACCTCAAGTCCTTCTCCATCCCGATGGACGCGGGTCTGGATCGCTACCTGAAGTCTGAGGTCCTTCGGCTCTACGTGTTCGACTacaaagaggagcagatggACACGTACGTGGGGAAGGCCGCCGTGCCTCTGGCGTCGCTTGCCCAGGGCGAAGAGATCAACGGTGTGTTTTTGCTGACGGATCCCTCCGGTCTCCCCGCCGGAAACATTGAAGTGACGCTGAAGTGGAAGTCCCCTTACCTCCCTCCACCCGGCTCCGTCGGGACTGTCGAAGAGCAAAAGTTCATCCcgaaagagaaagaaagcaagcaaacacaacagcacagagtggaggaaaagaagaaagagacacATGTTGCTGAGACGCCGCAAAAAGAAGACAAACACCTTTTTCATCAGCCCATCTCGCTCCCTACATCTGCTGCGTCTAAGGCCCCGCTGCCAAAACTCAGACAGAGGACCAAACTAAAGGACGGACCAGCTGCCAAAAAGGTCACGTTTATAGAAAGCTCAGCTACAGACGCCCAGGTTGGTGAGCGAGAGACGAGACAGACGCCAGTCTCACCTGTTGTGAAGGTTTTGTCCGAGGCGAGTCGGGCTGCTCAAAGCACcgcagaggaagaagaagaagaagaagagtctcACTTCTCTGAAGGTCAGCTGATCCCGGCCAGCTCTCAGTCGTTCTCCGACGACTCTGAAATCTCAGAGGAAATTACAGAAGATGTGGAGGCGTCCCCGAGAGATCCGAGTGAATCCACTCAGTCGGACAGCGATGACTGCATCGTTCACGGGCAGACGGCCGGGAGGAagCCCTCAGAGCGAGTTCTCCTGGAGGTGGTGTCCCTGAGCTTGCGGCCTGACTCTCGGGTGTCCCGGGACAGCAGCGTGGTGCGTCTGTTTGTGGAGTACTCTCTGCTGGATCTGCCCACCGAGGAAACGCCGCTGTCTCTCCCCAAACCCCCGCTGGGAAAGACCATCAGCTACAACTACAGCAAAGTCGTTCCTGTGGACGCCGAGTCCAACGCGGCGCGGCGGCAGCTGCTGAGGAGCGTCCTGCAGGGACGAAGCCCTCAGATGGAGAGAATTCGGTTCACGGTGGTGAGTGAGCcaccagaggaagaggagcaggagagggagtGTGAGGATGTGGGCGTGGCTTTCCTCAGGATCCCCGAAATCCTGGAGAGACAACGAGACCTGACGGAGACCAGCCTGGAtgTGTTGGACGTGGAGGACAGCAGCGAGGTCATCGGCAGTCTGACGGTGTCGGTGGAGGGACTGGAGGCTCTGCAGGCCATCATGGAGGAACAGGACCAGGAGCTTCCATCAGCACTCAACGTCACATGACTCACCCACAGAACTCGAGGTCACATGACTCTCCATCTCAGACACAGGACACGCCCACAGAGAGAAGGTGACACCAGACGCGCTGTGTGTCAGAAACTGAAACAAAGATCATGAGAAGTTCTTCATACCTTCAGGACCCAAACTCTGAGGacgggaaacactgatccacatgttagagaccaaacaactaatacaactcatccattcatccattcattcattcatccgttcatccattcatccgttcatccattcatccaggacATGATCCACACATTAATCCACAATCCCAAACATCTTGACTGAAAAAGTGACTTTCTGTCCGAGTTGTGTTGGCAGATCAACAGCTAGCATGTGGATGTGTcggtaacacacacactcacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacaga

Function

NR:

description
protein fantom

GO: NA

KEGG:

id description
K16550 RPGRIP1L; protein fantom

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039809879.1 True 4407 mRNA 0.57 26 1865668 1905302

Neighbor

gene id symbol gene type direction distance location
nox5 nox5 coding downstream 5710 1789550 ~ 1859958 (-)
LOC120564321 NA coding downstream 38737 1824090 ~ 1826931 (-)
LOC120564320 NA coding downstream 45148 1816911 ~ 1820520 (-)
LOC120564319 NA coding downstream 70916 1791630 ~ 1794752 (-)
chrm4b NA coding downstream 162254 1691369 ~ 1703414 (-)
LOC120563719 NA coding upstream 30786 1936088 ~ 1980407 (-)
LOC120563551 NA coding upstream 109994 2015296 ~ 2019324 (-)
LOC120563554 NA coding upstream 115702 2021004 ~ 2028583 (-)
LOC120563553 NA coding upstream 187519 2092821 ~ 2100613 (-)
LOC120563452 NA coding upstream 246749 2152051 ~ 2152948 (-)
G81609 NA non-coding downstream 2688 1862499 ~ 1862980 (-)
G81592 NA non-coding downstream 148422 1708041 ~ 1717246 (-)
G81581 NA non-coding downstream 149077 1640720 ~ 1716591 (-)
G81586 NA non-coding downstream 182687 1680821 ~ 1682981 (-)
G81580 NA non-coding downstream 224474 1640631 ~ 1641194 (-)
G81627 NA non-coding upstream 29685 1934987 ~ 1935976 (-)
G81643 NA non-coding upstream 134307 2039609 ~ 2040563 (-)
G81651 NA non-coding upstream 201672 2106974 ~ 2168454 (-)
G81652 NA non-coding upstream 201797 2107099 ~ 2107676 (-)
G81660 NA non-coding upstream 223069 2128371 ~ 2136349 (-)
ambra1b ambra1 other downstream 96758 1246936 ~ 1768910 (-)
G81576 NA other downstream 200776 1613394 ~ 1664892 (-)
trnae-uuc_58 NA other downstream 304943 1560654 ~ 1560725 (-)
trnae-uuc_57 NA other downstream 305579 1560018 ~ 1560089 (-)
kcnj11l LOC103374924,LOC108251025,LOC106531031,LOC103466804,LOC106904500,LOC103148617,LOC102236473,LOC100711429,LOC101469628,LOC102296518,LOC102199411 other downstream 317484 1538139 ~ 1548184 (-)
G81655 NA other upstream 205319 2110621 ~ 2112849 (-)
G81726 LOC106531021,LOC102237407,LOC103130839,LOC107099816,LOC101479225,LOC103365994,LOC107389108,LOC106938894,LOC106907116,LOC103466381,LOC101173933 other upstream 765013 2670315 ~ 2678513 (-)
G81738 NA other upstream 779596 2684898 ~ 2685240 (-)
LOC120563733 NA other upstream 846936 2752238 ~ 2819413 (-)
G81832 NA other upstream 1032450 2937752 ~ 2937990 (-)

Expression


Co-expression Network