kxd1 (kxd1)


Basic Information

Item Value
gene id kxd1
gene name kxd1
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053119.1
NCBI id CM020916.1
chromosome length 42187026
location 13155411 ~ 13158096 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039809918.1
CCTATGACCGGAAGTATACAAAACAAGGAAGcgctttgtttttattttatagccAGCTGTCAGATGCACCTTTAGGCTGCAGAAGTCGTTTTAAATCTGCTATTCAAACAGCCAGGGGTCGACGCAAACATCCACCGTGGGAGCTTAGCTTTTTCGTCTTGATTTTCACCATGGTGGAGCCCACAGCATCCGGCGTGTTCTGTAACAGGATGCTGAGCATGGTCAACTCTGAAGATGTGAACGCCATCATCCAGGCTCAGAGACACATGCTTGATCGCTTTGAGAAAACCAATGAAATGTTGATCAACTTTAACGGGCTGTCTAACGTGCGGCTGCAGCAGATGAACGAACGCTTCCTACTCCACACTCGCACCCTCGTGGAGATGAAGAAAGATCTAGACAGCGTCTTCAGGAGGATCAGGACACTAAAAGGGAAGATTGCTAAGCAGTACCCAGAAGCTTTCAGCAATATTCATGAGCCACCCATCCTGGAGGACGACGATGATGAGTTTGACCCAGTTCTCCCTGGTGCTCCCACAACAATTACAACAGCCACCTCGGAGCAGAGCACAGAGTCCTGTGACACAAGTCCAGATGTGATCTCACCCACTGTGAGCAGATGCTCTGAAGATCTGTCTCAAGAGCTGCCTGACACGCCCACCTCCGATTTCCTAGAGACAGCCGTCCTACAGGACGAGGGTCCGGACTCTGTACCTGCAGAatagttttttatatatagagattaattaattcattttttagtCATAATCTGTCTGTTGGGAAGAGTGTCACCACCTAAATAGATGTTAGATGTGGCTATGAACTGTCTGAGGATGCTGAATTTTTGTTGGCACGCTTTTTTGTCCTATGCCTGCACAGCACTAAAATAATGCAGATAATACTTGAAGTTGTAAAGTAACTCACTTTGGATGTATATCTATAGTACTGACAGTAATCCTTAGCTAAATCCCTTACTCATTATGTAATTATCATACCTGCATACTAGCAAacagcgactagtttgcaggtttgaattataaatatatttcattttgttgttgtttgaagCGATGCGCGTAGGGATGCACCAATCCAATACTGATATCGGGCCGATACTGACTCAAATAGTTCGATGAGGTATCGGTGACAGTGAGAGCCGATCTATTCAATTAAATTCTAtatttatatactatatacattatatactgaAATTGTACTTCCTGTTTAAGTTTAGACCAATTTGTTGCTGATTTGTTGTAAAAGGTTTACACTTGAATTGTAATTAGCCCAGGTCTTGGTATCAGGACTGAAAAAGTTGGatcagtgcatccctaatgCGCACCTGACTGAAGGAAGAAATCTCTCATGATTTAGGTTACTTAAAAGACAAAAGTTAATGATGTTCTCAACCTGAAAAATACTTAGAGTTACTACTGTTGTCATACTATTACAATAGTATTGTTTTGCAGAATTGCTATTCTATGGGCCCCTGTTAAAACCAGGAAATATGTTTGTTACTGCATTCGTGAATGTTTTCAGCAGCATTTAAGCCAATGCTTTACCGATCCTTGCCAAGAAATTCTCTCTTTGATTGCCGCCTGCATTGCAGAGAAGTCAGGGACAGGTTTAGTTGTTAGTGATTCAGCAAACTTTTAGAGGACACATGAGTAGGGCACAGGCTCTTTGATACGAGAGCTGGAAACCAGGTTGAGTGAGTAGGATCCAACCACTCCTTGCTCTCTGCAGTTTTCGTGTAAAAGGGAAGTCCagattaaaatgtactttatttgttatttatgtcatatttttacatctgtttttgtttgctgGTTTGAAACATCTCCTATAGTGATCAAATGTTGAAGCTGCTccataattataataattgtaTAGACTCTACTGTCTCTACTGAATAATATACATTCATTTATACAGTCACCTTCAAGTTAAAGTTAATGTCATACTTA

Function

symbol description
kxd1 Predicted to be involved in lysosome localization and vesicle-mediated transport. Predicted to be located in lysosomal membrane. Predicted to be part of BORC complex. Orthologous to human KXD1 (KxDL motif containing 1).

NR:

description
PREDICTED: kxDL motif-containing protein 1

GO: NA

KEGG:

id description
K20818 KXD1, BORCS4; KxDL motif-containing protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039809918.1 True 1967 mRNA 0.41 5 13155411 13158096

Neighbor

gene id symbol gene type direction distance location
LOC120563727 LOC104940840,LOC103375251,LOC104940445 coding downstream 2707 13147847 ~ 13152704 (-)
LOC120564327 LOC104941984,LOC100534567,LOC102302869 coding downstream 129043 13016565 ~ 13026368 (-)
LOC120563354 LOC104941983,LOC103374494 coding downstream 140436 13002120 ~ 13014975 (-)
LOC120564144 LOC103374492 coding downstream 181002 12965964 ~ 12974409 (-)
LOC120564143 NA coding downstream 211175 12940996 ~ 12944236 (-)
sinhcaf fam60a,LOC107388928,LOC103376222,LOC104940447 coding upstream 1217 13159313 ~ 13166108 (-)
LOC120564344 LOC104940834,LOC103371551 coding upstream 9222 13167318 ~ 13187582 (-)
armc10 armc10 coding upstream 30381 13188477 ~ 13192744 (-)
LOC120563974 lrrc17 coding upstream 46580 13204676 ~ 13209541 (-)
fam185a fam185a coding upstream 54713 13212809 ~ 13216422 (-)
G84378 NA non-coding downstream 109382 12977962 ~ 13046029 (-)
G84384 NA non-coding downstream 114965 12991027 ~ 13040446 (-)
G84376 NA non-coding downstream 171351 12972389 ~ 12984060 (-)
G84370 NA non-coding downstream 206488 12948661 ~ 12948923 (-)
G84369 NA non-coding downstream 206802 12948274 ~ 12948609 (-)
G84446 NA non-coding upstream 35173 13193269 ~ 13193706 (-)
LOC120563976 NA non-coding upstream 42847 13200943 ~ 13201663 (-)
G84532 NA non-coding upstream 77077 13235173 ~ 13235410 (-)
G84533 NA non-coding upstream 78555 13236651 ~ 13236861 (-)
G84528 NA non-coding upstream 113156 13271252 ~ 13272529 (-)
G84123 cat,LOC102293651,LOC102204975,LOC102775586,LOC102293936 other downstream 1010865 12141523 ~ 12144546 (-)
G84083 NA other downstream 1267013 11888027 ~ 11888398 (-)
ptpn9a ptpn9 other downstream 1894450 11173553 ~ 11260961 (-)
oaz2a oaz2,LOC104929548,LOC101470759,LOC102200097,LOC106531198 other downstream 2242194 10823286 ~ 10913217 (-)
LOC120564603 NA other downstream 2440566 10706219 ~ 10714845 (-)
G84530 LOC100696427,LOC106963151,LOC107104182,LOC107388919,LOC104956556,LOC102796452,LOC102202152 other upstream 72521 13230617 ~ 13231095 (-)
prr5a prr5,LOC103371545 other upstream 88732 13246828 ~ 13256093 (-)
LOC120564547 fbxl14,LOC103380143,LOC107388938 other upstream 167877 13325973 ~ 13385205 (-)
mafb maf,LOC104941368,LOC104940469,LOC101071510,LOC101484138,LOC103380135,LOC102219741,LOC106520304 other upstream 415735 13573831 ~ 13618786 (-)
zgc:77752 NA other upstream 873008 14031104 ~ 14037716 (-)

Expression


Co-expression Network