si:dkey-10o6.2 (LOC104921785,LOC100704824,LOC102313177,LOC101482952,LOC102782089,LOC102213179)


Basic Information

Item Value
gene id si:dkey-10o6.2
gene name LOC104921785,LOC100704824,LOC102313177,LOC101482952,LOC102782089,LOC102213179
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053119.1
NCBI id CM020916.1
chromosome length 42187026
location 10141783 ~ 10149106 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039810054.1
CTTGTCTGCTTActgtttgttgttattattacatCCTGTGGGTTAGACATACTTTGCATACCtgttcagaaacacattttggtTCTTTTAAAAATGAGCATTCCAGTGGTGGACTTTGGCGCATACAGCCTGAGTAAGGAAGATGTTACCGACGACCAGATGCGAAATTTAAGCAAAGAGTTGAAAACCGCTTTTATAGAagttggttttgtttttctgaagaACACTGGGATCACTCAGGAGGAGGTGGATGGTGTTATGGCCATATCCAAGACATTCTTCCTGCAGCCAGATGAAGTGAAACAACCCTTCAGCAGGAAAAGCTTTGCCAACAATCCCAACCACGGCTGGGTGTCTCTGGAGACTGAGAAgttgaATCCACGTCGGCCTGGAGACCTAAAGGAGGCATTCAACTATGCTTCACTCCACCCTGACATTaaatggcCATCTGTAAAAGGGTTCCAGGAGATCCAGACGTCTTTCTTCCAGCGCTGTACAGAGCTAAGTCTGCGGGTGCTGAGGGTGATGGCCCACAGTCTGGGTCTGAACCCAGAGGTGTTCCTGAGTGCGCACCGTTTAATAGGAACTGATGAGAATGGCACAACACTGCGGTCTCTGTACTACCCCCCAGTAAACCATGAGAAAGTGAAGGAGGGTCAGCTGCGATGTGGAGAACATTCCGACTACGGCAGCATCACCCTGTTGTTTAGCAGCTCTGAGGGTCTGCAGGTTCGAAAACGTTCAGGTGAATTCATCTGCGCTCCCTCCGTCCCCGGAGCGGCCCTCATCAATGTCGCTGATCTGATGCAGCGCTGGACCAATGATCAGTTTGTCTCTGTGCGCCACAGAGTtgtgctgccccctgctgggGACTCCCGCACACGTCAGTCTCTGGCTTTCTTCGTCCAGCCGGATGATGAGGCTCTGATCACCTGCTGCGACGGCTCCAACAAATACCCCCCAGTTACAGGAGGCGACTACCTCATGGAGCGATTCAATGCCTCATATGGAAACTGAATCTCTACCCCGCCCTATTCTGTACAGGCAGCCAGCGTAGGGAGGCAAGAATGGGAGTAATGTGCTCCCTCTTTTTGACCTTGTCAAAACTCTTGCTGCTACATTTTGAACTAGTTGGAGACAAGATGATACCAAACTATAACTGGTTGCAATAATCAAGGCAGGGAGATATAAAGGTATTATTATTTGACTGTTTTTAATTGTAAAGTGTTTTAGTTTTGGTTTTAGGACCATACTTCATGGTCCTAAAATTGCACCTAAAATGTATTGATCTATACCTGgaatttattcatgttttatcaAGTTAGTTTTGTCTAAAATAATCAATATGTCACTTTAGATCCCACactgtttttacatttgaaatatGATGGTGTCAGTGATATAAACTtatataaactttatttcagTCCCAGGGCGATCCATATCACAATAAAAAGCACACAGAGtataacataaaatacaaaaatgcaaAACCTTCCACAATGTTTAGTGTCTGACATACAGACGTTCGCCAATGGTTCCACAGTCTGGAAGAAAAAACAGGTTAGCCAAAACAGTGATCAAGTCATTTTCTGACTCAGATCCCCTACAAATAAATCTATACATCAGGATACGTAAAACAGCAGAGCAGATAGGTACCCCGACACTGACAAACATGCTGTCATTATAAGCCACTATGAGTTTTCTAATGCTGCCTTGCTTATAACGACACCACAGGTAGGCAGTAGATCTTCACAGATACACAGCACATGCTAAACTTACGACGCAGCACGTTAGCTTGAGCATACAGCTTCCGACGCTGCCTTATCATCAGACAGGTCATTTGCAATAATATGGCCCAAATATGTAATCTCACTGCACACCCTAAGTGCAGTGCCAGACAGATATAAGTCAGGGAAGGTtgactgtctgtcttctctACTTCTAATAATCATGATCTTACTCTTTTtggcattgtattttatatcaaAATCAGCACCATACTGGGTGCATATTCTCAGAAGCTGTTGGAGACCAGCACTATATGGGCTAAAAATGACCAAATCATCTGCGTACATAAGGTGATTAATTAGTGAGTCACCAACCCTACAACCTGTACcacatacatttaaaatcaaGGAACAATCATTCATAtacatattaaaaagaaaaggagacagaATTCCACCCTGGCAGACACCATTGGCCACTTGGAAGGGGACAGATGTAACATTCCCCCATCTAACTATCATTGTCTGATGCGAGTACCAATACACCAAGATTCTGTGAGTTAATGtgtatgatttaaaaaagaaacaaacctCAAACCTG

Function

NR:

description
UPF0676 protein C1494.01-like

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0016706 2-oxoglutarate-dependent dioxygenase activity molecular_function
GO:0005506 iron ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039810054.1 True 2331 mRNA 0.44 7 10141783 10149106

Neighbor

gene id symbol gene type direction distance location
rps13 rps13,LOC107586033,LOC107700620 coding downstream 64819 10072964 ~ 10076964 (-)
LOC120564824 NA coding downstream 68361 10073293 ~ 10073422 (-)
LOC120563691 NA coding downstream 261193 9765862 ~ 9880590 (-)
psma1 psma1 coding downstream 561331 9576588 ~ 9580452 (-)
rpl27a rpl27a coding downstream 630415 9506566 ~ 9511368 (-)
tdg.1 tdg,LOC103366448 coding upstream 17218 10166324 ~ 10173342 (-)
LOC120564668 abhd2 coding upstream 237219 10386325 ~ 10397440 (-)
acanb NA coding upstream 300234 10449340 ~ 10467674 (-)
map1ab map1a,LOC101157288,LOC107093210 coding upstream 397669 10546775 ~ 10632785 (-)
trex4 LOC104932121 coding upstream 534747 10683853 ~ 10686618 (-)
G83669 nucb2 non-coding downstream 7038 10132747 ~ 10134745 (-)
G83613 NA non-coding downstream 249028 9891384 ~ 9892755 (-)
G83610 NA non-coding downstream 253111 9888444 ~ 9888672 (-)
G83609 LOC107690399,LOC105905572,LOC104946089 non-coding downstream 254817 9882235 ~ 9886966 (-)
G83606 NA non-coding downstream 360669 9780635 ~ 9781114 (-)
G83699 NA non-coding upstream 35130 10184236 ~ 10184640 (-)
G83703 LOC103379807,LOC105006114,LOC103366387,LOC101079219 non-coding upstream 40713 10189819 ~ 10191806 (-)
G83744 api5 non-coding upstream 53625 10202731 ~ 10204403 (-)
G83746 NA non-coding upstream 66297 10215403 ~ 10277798 (-)
G83759 NA non-coding upstream 141690 10290796 ~ 10294507 (-)
pik3c2a pik3c2a,LOC102781015 other downstream 11826 10078071 ~ 10129957 (-)
ppp1r15b LOC104921782,LOC104967023,LOC106964268,LOC103156571,LOC103465711,LOC102222546 other downstream 69273 10067916 ~ 10072510 (-)
LOC120563773 LOC102779219 other downstream 91249 9894777 ~ 10050534 (-)
LOC120564711 NA other downstream 590364 9542670 ~ 9551419 (-)
cav1 cav1 other downstream 2280555 7848065 ~ 7861228 (-)
tdg.2 LOC104948407,LOC103366417 other upstream 25365 10174471 ~ 10180001 (-)
G83826 mfge8,LOC104961859 other upstream 240138 10389244 ~ 10432144 (-)
scamp2 LOC103379909,LOC103364404,LOC104932119 other upstream 494810 10643916 ~ 10662678 (-)
LOC120564603 NA other upstream 557113 10706219 ~ 10714845 (-)
oaz2a oaz2,LOC104929548,LOC101470759,LOC102200097,LOC106531198 other upstream 674180 10823286 ~ 10913217 (-)

Expression


Co-expression Network