rabl2 (rabl2b,rabl2a,LOC102798136)


Basic Information

Item Value
gene id rabl2
gene name rabl2b,rabl2a,LOC102798136
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053119.1
NCBI id CM020916.1
chromosome length 42187026
location 14022047 ~ 14027064 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039810069.1
ATGACGAACCGTGGTCCTTCAGGCGTCCCCGTTGCATAGGAACGACAACCGTCAGACAAATCATGAAGcatctagctagctacaaaCTTTTGATCGATAACTTAGCTACCTAGCTGGATGAGTGTAGAGAATCAACAGACCTTTCTTTGTGatagacaaacaaaacatacacaagaCAGCCAGCGACATTTGGAGTACCAAACAAAATGCTATCAACTCGTTAGCTACTTCAACGGCGCTAGCAGActgttaactaacgttagcagtcGTTGCCTCTACTTCAGGGTGCATTGTGAAGGTAGCTAACGGTAACCATACAGGACTCTTAAGAGACTTTTTAAAAGACAAATGTAATCTGTACTATTCCCAGCTTCAGCTAGCATCAGTTGTGTCGATGTGTGGACCGACGTACTAGTGAAATGAGCGATATCAAGCCGAACCACACGATGTTAACCTCAGTTAACGTTAACCTATGGAAAGCTAGCTAACACTCATTCCCGTCCATACCCTTCGAATGCTAGCTTAGCTAAGTCATTTATTCAGGTAGCTATTTATCAATTCATCTAGGAAAGCGTCGACAAATACAATAATCCCAGTCAAAGCGATAGAAAGTTCATAAAGATAGTAAAATGGCTGGCGACGTTGGCAGCATCCCTGAACTGGACCAAAAGAAGTACGATTCAGACGAGCAGGTGAAGATCATCTGTCTGGGAGATAGTGCAGTTGGTAAATCTAAgcTGATGGAGAGGTTTCTCATGGACGAATATCGTCCCCAGCAGTTGTCCACTTATGCTTTGACTCTCTACAAACACACAGCCACTGTAGGAAACAAGACCGTAGCGatagaggtttttttttgttttgatttttgatttttggACACCGCTGGTCAGGAGAGATTTCAGAGCATGCATCCCTCATACTACCACAAAGCACATGCATGCATCATGgTTTTTGATGTTCAAAGGAAGATCACGTATAAGAATCTGGCCAGCTGGTATAAGGAGCTGAGGGAGTATAGACCAGAGATACCCTGTTGTGTCGTGGCCAACAAAATCGATGCTGATTTGAAGGTGACACAGAGAAGCTTTAGCTTTGGAAAGAAGCAAGGACTGCCATTTTACTTCGTATCAGCGGCTGATGGGACTAATGTTGTTAAGATGTTCAGAGAGATGATCAAGAGGGCGCTGGACTACAAGCAAAACCCCAGCGACTTCATGGATGAAGTGATGCAAGAATTAGAGAACTTTGACCTGGAGAAGAAGGAAAATAATTCAGATGAGGATGGATTGAAAGCACAAAGTCCCGAGTTGGTCTGAAAGATGTTTACAGATCCTCCCAACCCTCCTGTCCTCTCATGGATAGGTTATCCTCTGGGGTTGATGCTCAACACGCACATTGTTTGTCCTTATGTACTTTTGGTGGTCTGCTTTTATACCATTGGTTTGTAAGTCTACCACTGGAGGTCGGCAGAAAGTCTTTTAGTCAGGTTTGAAGTCCCTGCCCTCCATCCGTCCAGTGACATTGGTAGTGAAATAAACATGATTGAATAATTAGGAATTGTGTTGTTTACCTTATGATACTTATCAAcaatatatactataataatagtAGAAAATCCTACAGTGAGACTGAATGTGTTTTATATTGTAATAAGAATGTGAAGCATTGGAAACTAACTCACACAGAGCAAAGAGAACGTGTGATTATGAACCGTATTTGCTGCTGTTCTCGATGTTTTTGTGTAGTAAATTGTCTGCAGTGGCAGCTTCCGTTGGCTGCTTTTGTTGCATTCGTTTTATATGTAAAGTGTGTTTTCAGCACCCTTTCTAAATGAGAACTTAATGTACCATGTAACCAAATTGTTGTCATGTGTCTCTTTCTGACTTGCTGTGATCCAGCAGTAGGCACAAGAGCACTAAGTAGTCAACTTCAGTGTATTAGTCATACATGAGTAGACATCAGCTGTATTGAACTCTTGTGAAGGTCCCGGGCTTGTGAAACGCTCAGCCAGCTGTGTGCTTCAAGATGCATTCGAGGTGGCTGTGTGTACATTCATTTGTTCATATTAGCAGGAATGTTGCCATGAAGAATATTAAACCAGTTTTCTGGCAGAAGGTGACGCTCAA

Function

symbol description
rabl2a Predicted to enable GTPase activity. Predicted to be involved in intracellular protein transport. Predicted to be active in endomembrane system.
rabl2b Predicted to enable GTPase activity. Involved in cilium assembly and intraciliary transport. Located in cytoplasm and microtubule organizing center.

NR:

description
PREDICTED: rab-like protein 2B

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0005525 GTP binding molecular_function

KEGG:

id description
K07931 RABL2; Rab-like protein 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039810069.1 True 2129 mRNA 0.42 8 14022047 14027064

Neighbor

gene id symbol gene type direction distance location
arsa arsa,LOC101072550 coding downstream 236296 13781377 ~ 13785751 (-)
LOC120563982 pgc coding downstream 260714 13758290 ~ 13761333 (-)
chkb chkb,LOC100699097,LOC106532760,LOC102775816 coding downstream 281947 13727188 ~ 13740100 (-)
LOC120563649 LOC103364023,LOC104941359 coding downstream 295688 13722783 ~ 13726359 (-)
cpt1b cpt1b coding downstream 299659 13709986 ~ 13722388 (-)
odf3b NA coding upstream 834 14027898 ~ 14030995 (-)
LOC120563866 LOC100700167,LOC108229827,LOC102796952,LOC103368207,LOC106520317 coding upstream 12365 14039429 ~ 14046318 (-)
neto2b LOC103368211,LOC104965107 coding upstream 26888 14053952 ~ 14062743 (-)
terb1 terb1 coding upstream 52112 14079176 ~ 14090593 (-)
frmd4a frmd4a,LOC102793558 coding upstream 83402 14110466 ~ 14198123 (-)
G84597 NA non-coding downstream 336578 13683824 ~ 13685469 (-)
G84592 NA non-coding downstream 377199 13644417 ~ 13644848 (-)
G84585 NA non-coding downstream 577435 13434739 ~ 13444612 (-)
G84536 NA non-coding downstream 696789 13322182 ~ 13325258 (-)
G84528 NA non-coding downstream 749518 13271252 ~ 13272529 (-)
G84719 NA non-coding upstream 45569 14072633 ~ 14072948 (-)
G84751 LOC103368197 non-coding upstream 210518 14237582 ~ 14238451 (-)
G84752 LOC101063650,LOC106561215,LOC104965117 non-coding upstream 213457 14240521 ~ 14241054 (-)
G84760 NA non-coding upstream 235639 14262703 ~ 14263115 (-)
G84761 NA non-coding upstream 236352 14263416 ~ 14263741 (-)
mafb maf,LOC104941368,LOC104940469,LOC101071510,LOC101484138,LOC103380135,LOC102219741,LOC106520304 other downstream 403261 13573831 ~ 13618786 (-)
LOC120564547 fbxl14,LOC103380143,LOC107388938 other downstream 636842 13325973 ~ 13385205 (-)
prr5a prr5,LOC103371545 other downstream 765954 13246828 ~ 13256093 (-)
G84530 LOC100696427,LOC106963151,LOC107104182,LOC107388919,LOC104956556,LOC102796452,LOC102202152 other downstream 790952 13230617 ~ 13231095 (-)
G84123 cat,LOC102293651,LOC102204975,LOC102775586,LOC102293936 other downstream 1877501 12141523 ~ 12144546 (-)
zgc:77752 NA other upstream 4040 14031104 ~ 14037716 (-)
LOC120564470 NA other upstream 196133 14223197 ~ 14236952 (-)
LOC120563775 cacna2d1,LOC104952157 other upstream 474832 14501896 ~ 14558228 (-)
si:ch1073-390k14.1 LOC103375950 other upstream 934796 14961860 ~ 14967783 (-)
G85014 ppp6r2,LOC103370604 other upstream 1038975 15066039 ~ 15073350 (-)

Expression


Co-expression Network