LOC120563411


Basic Information

Item Value
gene id LOC120563411
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053119.1
NCBI id CM020916.1
chromosome length 42187026
location 21140507 ~ 21146513 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XR_005639947.1
CTGTGAAGTTAAAATAAGCTTTTGACAGTTCAGCAGAGTCGATATAGCTCATGTCTATATGATGGTTGTCAGTGTCACacaaacagagaagaagaagaaggtgcATTAGAGTGAAGAAAGAACAGATATTTTCAGTCTCTTTGGGTTTTTATAGCAGAGCTGACCTTGGGTGAAGGATTGGGCGAGGATGGTCAGGATGTTGGGTAGCGGGTGGAGGCTGGCTGCGGCACTGTGGACATGTAGAGAGGCATTCCTTGCGATGCTGCGGCTGTGGATTCACACACAGCTGGAAGGATGCATCAAAGTGAAAGAGAGGAGGGTGGGAggtcagaggaggagagacaagTAGCAGGTACACAGCACTGTAGAATGAAGATGAAGAAGCTGGATGACTGACCAAAAGATCAAAAAGAAGGGGGGTTTGGGGGTGTGACTCAGCCCTCATAGCCACTTCCTTTGGCATCTTCAGGATGGACAGATGAAAGTAGGAGAGGGAGTAACTCATCGTGTGGTCAGCTTGCTCACCATATAGGAACGGATACTGGGAAAGGAAGCATGTGCGTCTGGGTGATGGGGGGCTGGGataatatgtatgtgtatgagtGTTTGGTGTTTGACAGAGGCACAATTATTCCATTTCCCGTAACACCAGAGGAATGCAGGGTGAGATTCCTGCTCTGTGAGTCGTGCCCTCTCACCTGCCATCACCATACGGATACTATTTCATCCTTCCCTTTCCCCCCTCGAACGGGGAATTCCccagtgtgtttgtttttactcATGTAGGAAGTTACAGAGTTTTTATAAGCTGTGTTGTTCTGGTAATAATTGGATACAAGTTGCAGCTTAgtttaacaaaaatatgttcCTGTTTTCTCTGTACACAATTTATTGCGCTCATTTAAATGAGATCAGGAGTCTAATCTAGTCATCATAAATGAGGGGAAACAAGGAAAAATGCTACTCATTTTACAGCATTTTAGAGCTGGTTACTTACAAGCATGGAGGAAATAAATCTGGAGCATTATGTGGATGCAGCGTGTCGATGGAGTAAATTGCTTGTTTGCGTTGAGAGAGAGGATGCTTTGTCATGCTGGGtgtgtaatgtttgtgtgtgtctttgcgaGAGTAAGCTTAAGAAGCTACTGCACCTTTTATTTCCTGTATGGTTAATTATCCTATCATGTTTCTAAGGCTTACAAAACAATAAGATATTCACTGTTTACATCATTATACCTTACTGAAAATATTAATACAGGGCAGTTtatctacgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatgagccTATGGTGACTCACAGTTACAATAATGACTCTGGCAGAGCAGTTGGATGAACAGCTCACGCTGACtgtaaaagagagaaagagcgagAGGAGAGGGGGCTGTGCTCTCCCTGGCATCTCCATCTCATAACTCTTCTGCCGCTCAGTgtgttcatacacacacatagaaacacacatatTCATACAGCCTGAAGACAACCCTGAGGACTACAGCACCATGTTCAGTATAATACACTTTAGACCGAGCAGCGAGTGTGAAAACGCCTCCAGGGAGGAAATAATGCTTTGTGTGGTAGGTGACGGATCTTTTGCAACAGAATCAATGGGCCATCGTGCAGCAAGAGGCAGCCTCCCTCTACAAACAACAACCGCTACATTTGATCTACACTGCATCCAACTAGCAGCACGAGGCTTGCCAGTCCATACAGTATAACACAATATCAAAGGATGTCTTTTTCTGTATCCAACTTATCGTGTATTGAATGTTTAAGCACAATGCACTGTCTATAAAATCAGAAGACTGCACTCAGAAACTGATTTCATTTGGTGACGTAGATGTTTGTACCCAGTCTCTAGCACCATATGAAAACAGTGTTCTGGGTGGTGGTATATCAGCACGTAAGTACAACTTCTCTCCACACGTGTGTTTTATGGAACAATCAAAATGTACACAGAAATAATACCCTATTTCTTAAGGACTGGTATGACCAACATGTTGTGTTCATTTGTGAACTTCTAAATGAGAGGGGGGGACCTAGCTACCTATGAAGAGTTTATCCATCACAGAGAATTGGACATTTCTCGAACTCAACATTCCAGAGTACTTAAAAGTATATCCACTAATTTGCTGACTCTCATTAAAGAGTAACTGTCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005639947.1 True 2239 lncRNA 0.43 2 21140507 21146513

Neighbor

gene id symbol gene type direction distance location
LOC120564685 net1,LOC103371968,LOC102297003 coding downstream 6288 21120429 ~ 21134219 (-)
tasor2 NA coding downstream 42121 21073066 ~ 21098386 (-)
taf3 taf3,LOC103371965 coding downstream 69182 21062518 ~ 21071325 (-)
LOC120563607 celf2,LOC104940643 coding downstream 80973 21026854 ~ 21059534 (-)
dhtkd1 dhtkd1,LOC102784200 coding downstream 115961 21004383 ~ 21024546 (-)
LOC120564432 LOC103371976 coding upstream 4987 21151500 ~ 21158504 (-)
slc35b4 slc35b4,LOC102781124 coding upstream 13838 21160351 ~ 21165666 (-)
LOC120564647 LOC103366875,LOC101162597,LOC101469130,LOC102779886,LOC103134408 coding upstream 29077 21175590 ~ 21183883 (-)
tmpob LOC103366874,LOC102305331 coding upstream 38953 21185466 ~ 21189607 (-)
cnot4a cnot4,LOC102778264 coding upstream 117478 21263991 ~ 21276898 (-)
G86976 NA non-coding downstream 37128 21102630 ~ 21103379 (-)
G86853 NA non-coding downstream 231917 20908389 ~ 20908590 (-)
G86761 NA non-coding downstream 440870 20698815 ~ 20699637 (-)
G86686 NA non-coding downstream 678684 20402744 ~ 20461823 (-)
G86660 NA non-coding downstream 876301 20250890 ~ 20264206 (-)
G87030 LOC103366871,LOC104946806,LOC106525492,LOC108230167 non-coding upstream 98497 21245010 ~ 21251759 (-)
G87107 nrcam,LOC101067328 non-coding upstream 316192 21462705 ~ 21466246 (-)
G87120 NA non-coding upstream 340019 21486532 ~ 21512528 (-)
G87123 cntn1 non-coding upstream 400145 21546658 ~ 21549859 (-)
G87148 NA non-coding upstream 578410 21724923 ~ 21725658 (-)
LOC120563850 NA other downstream 252881 20877668 ~ 20887626 (-)
LOC120564033 LOC103358331,LOC102195670 other downstream 311272 20806882 ~ 20829235 (-)
G86638 NA other downstream 881248 20252639 ~ 20259259 (-)
cep152 cep152,LOC104960117 other downstream 1566819 19557452 ~ 19573688 (-)
G86402 LOC103363837 other downstream 1751932 19387822 ~ 19388575 (-)
dnajb9a dnajb9,LOC100706374,LOC102775779,LOC102215328 other upstream 223018 21369531 ~ 21372509 (-)
G87140 NA other upstream 566529 21713042 ~ 21713554 (-)
LOC120564778 LOC103358851,LOC101480430,LOC100706913,LOC102797593 other upstream 588493 21735006 ~ 21739344 (-)
LOC120564428 NA other upstream 1200657 22347170 ~ 22366978 (-)
parvg parvg other upstream 1542648 22689161 ~ 22706296 (-)

Expression


Co-expression Network