LOC120563424


Basic Information

Item Value
gene id LOC120563424
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053119.1
NCBI id CM020916.1
chromosome length 42187026
location 15858841 ~ 16048241 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XR_005639952.1
TCCGATTCTCCATGGATTCATCCCATGAGATGTACAGTTTAGCTAACATAAAAGTGACATTGGGGCTTATTATAAACAGGCGAGCGACATAAAAATGTCTAAATATGTCTAAAGTGGTTTGAGGCAAGGCCTAACCCGGACAAAACCCAACAGCGTTCGCTGCAGTGCAGTGCGCATTATGTGCGTAGGACGACAATGGTGCACTATCAGAATGAAGGAGATGCAAAGAGAGCCCTAGCCAAGCAGGGAGAGAAGGCAGTACAGAGTTTCAGACGGAGAAAGAGAACGCACACTTACCTACTGTAGAGCAAAAAGAGAGAAGTCATAAGGTGTGGAACCACAGATGCCAGTTGATGCTTCAGGGTAGAGGAGATAATTGAGCAAGTTCTCTGGAGAACTCCATCATTATCCACTATCTGTTACTGCAGTGTGTTTGCCCCAGATGATAGGAATGAGAATTCACCAAGACATTTTGTTTAACAACAAAACCCAGTTCATCTGGCCTTTGCTTTTCTGCAAAGCTACACGGTTTAGTTCTTTAA
>XR_005639953.1
TCCGATTCTCCATGGATTCATCCCATGAGATGTACAGTTTAGCTAACATAAAAGTGACATTGGGGCTTATTATAAACAGGCGAGCGACATAAAAATGTCTAAATATGTCTAAAGTGGTTTGAGGCAAGGCCTAACCCGGACAAAACCCAACAGCGTTCGCTGCAGTGCAGTGCGCATTATGTGCGTAGGACGACAATGGTGCACTATCAGAATGAAGGAGATGCAAAGAGAGCCCTAGCCAAGCAGGGAGAGAAGGCAGTACAGAGTTTCAGACGGAGAAAGAGAACGCACACTTACCTACTGTAGAGCAAAAAGAGAGAAGTCATAAGATTCCAGAGGTTGAAACTGGCAGGGAGATTTTAAGCAAATGGCATCTGGTTAAAGGTCAGATTCGGGGGCCCCAGTGGGTGAAAGGTTGAATAACTCCAAGTAAGGTAGTGACCATGTCTTCTGGGAGATGTTTTGGAGCTCGTTTTAGGCAACAACTTATCATAGGACCAATCTAATCCTTTAAAaccttaaataaaaaacattttgtattattgatcATTTGAGTGTTTAGAGAAACTTCTTGtagttaaatattttttgttgtaaactttagaaaacaaacaaatgagttAAAGATGTTACTGTCAAGATTTTAGTGTTTAATCAGTTTACAGCTAGTTCAGTTCAGATGTATTGGATTTCTTCACTTTGATTGATTGTTTTTACCCAGCCTTTAAAAATAAGTGAAGAAAAAGGTTTGTTGGAGGGATCACAGTTTTGAGTTCAAACTGCAGGTGTGTAAATTGGAACATGCACGTTTCTTCTAAATTGGGCATTGAGGGCTCGGAGAGAGCGGTGGGGGAAATTAGTGGAATAACTGGTTGATTCTAACCAGATGATTGCTTCAGTTGGACACCAGAGAGTTTTCATTAGGTCTCTAATTTACAAGCCTCCCTCTGCATTCCAGCCGGTGGACCCTCTGCCCCAGGTCTTAAAGATCTCCTTTAGCCTTTGCCCCTTGCAAAAGTTGTTGCCAAAGCCATGCACTTTGCAATGTACAAATTACTTTATGTTAAACTTCAAGTGTTAGAGGAATTGATATTTAAACATTATCACTTTTCAACTGTATTATTCATCATAATATGTATATGTTAATATAATAAGGTCGGTCAGGTGTCGGTAAGAAAGCAGCTATAGTACATCCTTAACATCAGTCAactttgtatgtgtttattatatatattataaagcCATTAAAACCCCTGCTGAAAGAGTTTACTGCAGAGGTTGCCGTGAAAAACTTTTACACTTTTGATCTTTTGTTACTCAGAAATATATTCAGGGAACTGGAACAAACACTTTTGATTTAATCATTTACCATATCTCAAACACCAATTGTCAGCGCAACACAAACGTGACCACAAATATGTCAAAGCATGTTTTAGGTGGATGCTCTTTTGGATTGCTGATACAAAGGAGTGCACAATGATGACAATGAGCTGTAAAGATTTGACAAATCTAAGTAACAGCAAACGCGTTCATGCTTCAT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005639952.1 False 542 lncRNA 0.44 4 15969073 16048241
XR_005639953.1 True 1540 lncRNA 0.38 4 15858841 16048241

Neighbor

gene id symbol gene type direction distance location
nr2f2 nr2f2,LOC107388818,LOC100705923,LOC108230091,LOC102227842,LOC104957255,LOC106930729,LOC105023478,LOC106573769 coding downstream 46842 15802424 ~ 15811999 (-)
pgpep1l LOC103364746 coding downstream 395127 15456807 ~ 15463714 (-)
cd9a NA coding downstream 540996 15310877 ~ 15317845 (-)
syt1b syt1,LOC100710649,LOC102779835,LOC103358504 coding downstream 554561 15298687 ~ 15304280 (-)
otogl otogl,LOC102779350 coding downstream 566879 15262486 ~ 15291962 (-)
slco3a1 slco3a1 coding upstream 165534 16213775 ~ 16254088 (-)
LOC120563512 LOC104964038,LOC103375536,LOC102794895 coding upstream 332702 16380943 ~ 16409443 (-)
zgc:162879 LOC104964034,LOC103368560,LOC100692867 coding upstream 403792 16452033 ~ 16461232 (-)
sema4ba sema4b,LOC103368553,LOC100693140,LOC101470126 coding upstream 414314 16462555 ~ 16549024 (-)
LOC120563779 NA coding upstream 481201 16529442 ~ 16532441 (-)
G85125 NA non-coding downstream 385984 15466582 ~ 15472857 (-)
G85121 LOC103364747,LOC103358513 non-coding downstream 399928 15455655 ~ 15458913 (-)
LOC120563610 NA non-coding downstream 402287 15455840 ~ 15456554 (-)
LOC120563611 NA non-coding downstream 403327 15453209 ~ 15455514 (-)
G85084 NA non-coding downstream 495416 15361837 ~ 15363425 (-)
G85250 NA non-coding upstream 209734 16257975 ~ 16258235 (-)
G85253 LOC104921699,LOC103367513,LOC104941665,LOC101473242 non-coding upstream 227410 16275651 ~ 16277412 (-)
G85312 NA non-coding upstream 322760 16371001 ~ 16372919 (-)
G85319 NA non-coding upstream 413321 16461562 ~ 16462518 (-)
G85328 NA non-coding upstream 480366 16528607 ~ 16528849 (-)
G85133 mef2a,mef2aa,LOC107553916 other downstream 314759 15514778 ~ 15544082 (-)
ttc23 LOC104957250 other downstream 374696 15472934 ~ 15484145 (-)
G85014 ppp6r2,LOC103370604 other downstream 785491 15066039 ~ 15073350 (-)
si:ch1073-390k14.1 LOC103375950 other downstream 891058 14961860 ~ 14967783 (-)
LOC120563775 cacna2d1,LOC104952157 other downstream 1300613 14501896 ~ 14558228 (-)
chd2 chd2 other upstream 107743 16155984 ~ 16187336 (-)
st8sia2 fam174b,st8sia2,LOC100690985,LOC101474125,LOC102798331 other upstream 140612 16188853 ~ 16209186 (-)
G85321 NA other upstream 391133 16439374 ~ 16440965 (-)
LOC120563869 frmd5,LOC104917831,LOC102299895,LOC106561170 other upstream 648854 16697095 ~ 16763718 (-)
trnah-gug_10 NA other upstream 716474 16764715 ~ 16764786 (-)

Expression


Co-expression Network