XLOC_004670


Basic Information

Item Value
gene id XLOC_004670
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 19458809 ~ 19459285 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00010733
AGCAACATGCACAgggacacacacatgcatgcacacacacatattgttcCATGGAACAGCCTTATTAAACTTTGTGTAAAGCTGTTGGTGGAATTGAATTCGGTGGGGGGCTTGATGTGGGAGTCTCTCAGTTGGCTCCTTGTGTTTACTGCTCATACATCCTGAATGTCAGGATAATGGTGGATGATATATCATGATGTGCTAAAATTGTGTGCATTCAGTTCTATCTGTAATCaagatttgtttctgttttatgttctGCAAAATGCAAGCTGATATTACAAATAATGAAAACAGTAAATTAATGTTTTCTGCTCATCAATTGAATAGCAATTTATCACACTTGGGGACAGATTAACTAACAGCAAACTGTCTTTTTGGTgttaagggatagtttacccttCAGgagtcatttactcactcttgtttCAAACActtgagttttttcttctgttgaatataaaagaagatattttg

Function

GO:

id name namespace
GO:0010467 gene expression biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0045934 negative regulation of nucleobase-containing compound metabolic process biological_process
GO:0032039 integrator complex cellular_component
GO:0044424 obsolete intracellular part cellular_component
GO:0044428 obsolete nuclear part cellular_component
GO:0005622 intracellular anatomical structure cellular_component
GO:0043227 membrane-bounded organelle cellular_component
GO:0043229 intracellular organelle cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component
GO:0046966 thyroid hormone receptor binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00010733 True 477 lncRNA 0.36 1 19458809 19459285

Neighbor

gene id symbol gene type direction distance location
XLOC_004668 si:dkey-16i5.8 coding upstream 55859 19401854 ~ 19402950 (+)
XLOC_004666 rsl1d1 coding upstream 64841 19384615 ~ 19393968 (+)
XLOC_004667 BX649366.2 coding upstream 70536 19388143 ~ 19388273 (+)
XLOC_004665 gspt1 coding upstream 74864 19362335 ~ 19383945 (+)
XLOC_004664 dmc1 coding upstream 96623 19356623 ~ 19362186 (+)
XLOC_004671 cpped1 coding downstream 407580 19866865 ~ 19932623 (+)
XLOC_004672 ercc4 coding downstream 499560 19958845 ~ 19975373 (+)
XLOC_004673 mrtfba coding downstream 517115 19976400 ~ 20045101 (+)
XLOC_004674 mgrn1a coding downstream 662971 20122256 ~ 20157014 (+)
XLOC_004675 NA coding downstream 804300 20263585 ~ 20265465 (+)
XLOC_004660 NA non-coding upstream 187653 19267759 ~ 19271156 (+)
XLOC_004648 NA non-coding upstream 590834 18861278 ~ 18867975 (+)
XLOC_004644 AL772266.2 non-coding upstream 859845 18598850 ~ 18598964 (+)
XLOC_004635 NA non-coding upstream 1230805 18209871 ~ 18228004 (+)
XLOC_004679 NA non-coding downstream 1032334 20491619 ~ 20504801 (+)
XLOC_004689 NA non-coding downstream 1347612 20806897 ~ 21106987 (+)
XLOC_004691 FO704814.1 non-coding downstream 1978061 21437346 ~ 21437458 (+)
XLOC_004694 NA non-coding downstream 2298532 21757817 ~ 21799396 (+)

Expression


Co-expression Network