LOC120566002


Basic Information

Item Value
gene id LOC120566002
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 453142 ~ 465715 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU123658
ACCAATCTCATGCAGACCCCGTGGCAAGGTGAGCGGCAGTCATCTGCTCAGAGAGGGAAAACacacaccccctctctctcacacacacacatataccctcacacacacacacatataccctcacacactctcacacacacacacacacatatataccctcacacactctcacacacacacacatataccctcacacactctcacacacacaggacacacagccGAGCAGAATGATGAGCCTTTTTCCACATCACCGTACGCCTCGGGTCGCTTCTcccttctcctttttttctctctccccccttcctCGGGTATAATTAGGGCTTTATCGTCATCCTCACCCGAGAgcaagaacaagaagaagaagaggaagaggaagaagaagaggaagaaaaagaaaaagagaagagaagaagcagTCCAGGGGCAGAACTGAACTGACTCCACAACTTGTAATGCGTCTTTATGGTGACTTTAACGGGACGGaggcaggtagagagagagagagagagagagagggagagagagagagagagagagagctctggACACATGGAACTGCTTACACACTATCATGTTAGCTTTTGTTTTGGgtttccatcttttcctcttcccccccccccgctccaTCCCTCTTTCTTCTCCCCTGAATGAATCCCTCCGTCCCTCCTTCTTCTTCAAGCAGGACAGAAAACTCGTGTGTTTTGCCATAAATACCTCCACGCCGAAGGATCCCGTGGAAGCCCGGAGAGACGGTCCATCGCGCCTGCAAAAGACACAACACGACAACACAGAATCAAGCCTGTGAATGCATCGCTGTTTTTGCAGCCGACCACTGGATAATGTAAGTAATGTAAAGTATGTTGtagcgtgtcattgggcatttttaagtgggtatatggaaatcctggagctttcatAGTGGGTAAACTGCCTATCTATCTATTAAAGGGAGTGCATTATGGAACACACTACCCCCAACTATAAGGGAATGTCCCACTCTGGCCACCTTTAAGAGCCAGGTAAAGGTGTGGCTTACAGCTAACCAAATGTGCAACCACCTCTAACTGTATGTTGTACCGTATTAGCCCAGTAGAGCATACTAATGAATTGTGTCTCAGTTTTAACACTTATTAATGAattatcctgtttttttttctatttgtttcTTCCTGTTTCTCCTTATTTAATATAGCAAATGTTACTACTGTATAGATATatcttttgtcctttttattgtaaGTTCAACCTGCCTAAtggactgcagatggaaattagcccttgggctacaatctggcaTTTTTACGTGTACTGTTGTACATGTTCATCACAAGAgcattgtcctgaaataataaaataaataaaaataagtaaaaatattcctgcgtatcacgtagactacaccactggttgaAAGTGCAGATTAATTCAAaacagttctatatattttcAAGAAACAGAGAATCTAGCCTGTGAATGTATCGCTGTTTTTGCAGCCAATCATTGGACGTTTTATTAAGTTTTGAAAAGGCTTTCATTGGATAATTTCTGCGGTTGTTATTTCTACACAAACTGAAGCATGACATCCTCTTAAACCCTCCTGGTGTCTTGTCGTCAACTGTGcaactttgtttttctgggtcgaattttgttgttctttatctacacttttctcaac
>XR_005640315.1
AGCCCGCTCCATACCATATGGAAtcatgggtaaaaaaaaaaaaaaaaaaagctccttGACAATGAACCAATCTCATGCAGACCCCGTGGCAAGGTGAGCGGCAGTCATCTGCTCAGAGAGGGAAAACacacaccccctctctctcacacacacacatataccctcacacacacacacatataccctcacacactctcacacacacacacacacatatataccctcacacactctcacacacacacacatataccctcacacactctcacacacacaggacacacagccGAGCAGAATGATGAGCCTTTTTCCACATCACCGTACGCCTCGGGTCGCTTCTcccttctcctttttttctctctccccccttcctCGGGTATAATTAGGGCTTTATCGTCATCCTCACCCGAGAgcaagaacaagaagaagaagaggaagaggaagaagaagaggaagaaaaagaaaaagagaagagaagaagcagTCCAGGGGCAGAACTGAACTGACTCCACAACTTGTAATGCGTCTTTATGGTGACTTTAACGGGACGGaggcaggtagagagagagagagagagagagagggagagagagagagagagagagagctctggACACATGGAACTGCTTACACACTATCATGTTAGCTTTTGTTTTGGgtttccatcttttcctcttcccccccccccgctccaTCCCTCTTTCTTCTCCCCTGAATGAATCCCTCCGTCCCTCCTTCTTCTTCAAGCAGGACAGAAAACTCGTGTGTTTTGCCATAAATACCTCCACGCCGAAGGATCCCGTGGAAGCCCGGAGAGACGGTCCATCGCGCCTGCAAAAGACACAACACGACAACACAGAATCAAGCCTGTGAATGCATCGCTGTTTTTGCAGCCGACCACTGGATAATGACAGATAAAAGCAGCGGAGAACGTCCGACgcggagcagcagcagcagcagcgtccCATCCTGTCGCACATCAACAAACTTGCTGTAACCTGTAAGATCATTTCACTGTGTGCTTGTGCTGAAgttaaaggggagagaggggtggtGGGGGTAT
>XR_005640316.1
AGCCCGCTCCATACCATATGGAAtcatgggtaaaaaaaaaaaaaaaaaaagctccttGACAATGAACCAATCTCATGCAGACCCCGTGGCAAGGTGAGCGGCAGTCATCTGCTCAGAGAGGGAAAACacacaccccctctctctcacacacacacatataccctcacacacacacacatataccctcacacactctcacacacacacacacacatatataccctcacacactctcacacacacacacatataccctcacacactctcacacacacaggacacacagccGAGCAGAATGATGAGCCTTTTTCCACATCACCGTACGCCTCGGGTCGCTTCTcccttctcctttttttctctctccccccttcctCGGGTATAATTAGGGCTTTATCGTCATCCTCACCCGAGAgcaagaacaagaagaagaagaggaagaggaagaagaagaggaagaaaaagaaaaagagaagagaagaagcagTCCAGGGGCAGAACTGAACTGACTCCACAACTTGTAATGCGTCTTTATGGTGACTTTAACGGGACGGaggcaggtagagagagagagagagagagagagggagagagagagagagagagagagctctggACACATGGAACTGCTTACACACTATCATGTTAGCTTTTGTTTTGGgtttccatcttttcctcttcccccccccccgctccaTCCCTCTTTCTTCTCCCCTGAATGAATCCCTCCGTCCCTCCTTCTTCTTCAAGCAGGACAGAAAACTCGTGTGTTTTGCCATAAATACCTCCACGCCGAAGGATCCCGTGGAAGCCCGGAGAGACGGTCCATCGCGCCTGCAAAAGACACAACACGACAACACAGAATCAAGCCTGTGAATGCATCGCTGTTTTTGCAGCCGACCACTGGATAATGACAGATAAAAGCAGCGGAGAACGTCCGACgcggagcagcagcagcagcagcgtccCATCCTGTCGCACATCAACAAACTTGCTGTAACCTGGCTGGAGTACTCGAGTCCGGACTTGGACCTGGACTTGGACCTGGACTTGGACCTGGACTTGCCACTGGCGTTGCCAAATAcagcttttggtctcgaccgagtccaggTGTCTTCACTATGTTTATAATCACATTGGAGGGAAAGTGCAACACTGGCCACCTGATAACCAATCACACACTAGACACTGTTTTTGCTTTTGCAAATAATAACCCCAAAATGATTGTCTTGATACTGTCATGCATaagatttttaattttttcatctGTCCTGGACTCGGTCTTGTCTTGAATTTGAACCTCTTTGGACTCGGCCTTGACCTGGTCTCGACTAGgtggtcttggacttgtcttggactcaacAAAGGTGGTCTTGGCTACAGCCCTGACtcctacatatatatacagtatacaaacTGCTGTCCCAGATGCTGGTGGTGCATTCAGCTCCCAGTAGGAGGCAGTGTTGTGTTTctgggttttatttattttgtcttgaaGAGGAATGTGGACTGAAATCAGGACAGCTGTTTCTGATTTGACTCACCTGCTCCCTGACTGTAGCCGACTCTTCCTGCTGTCATGTTCCAGTGAATCTGGGTTTCC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU123658 True 1678 lncRNA 0.43 2 453207 459811
XR_005640315.1 False 1063 lncRNA 0.50 3 453142 460605
XR_005640316.1 False 1603 lncRNA 0.48 4 453142 465715

Neighbor

gene id symbol gene type direction distance location
LOC120565788 LOC100695038,LOC103366337,LOC107380922,LOC107082714,LOC105918713,LOC105028844,LOC106604646,LOC106611650 coding upstream 293685 141925 ~ 159457 (+)
stx6 stx6 coding downstream 318484 784199 ~ 808239 (+)
LOC120565732 NA coding downstream 320987 786702 ~ 787874 (+)
wdr18 wdr18 coding downstream 366526 832241 ~ 854498 (+)
grin3bb grin3b coding downstream 420644 886359 ~ 955236 (+)
med16 med16 coding downstream 517936 983651 ~ 1009213 (+)
G91877 NA non-coding upstream 643 407787 ~ 452499 (+)
G91866 NA non-coding upstream 5973 364410 ~ 447169 (+)
G91879 NA non-coding upstream 42317 409455 ~ 410825 (+)
G91862 NA non-coding upstream 122121 330469 ~ 331021 (+)
G91857 NA non-coding upstream 162446 284398 ~ 290696 (+)
G91892 NA non-coding downstream 34373 500088 ~ 500565 (+)
G91893 NA non-coding downstream 40771 506486 ~ 507276 (+)
G91895 NA non-coding downstream 43381 509096 ~ 510112 (+)
G91896 NA non-coding downstream 54772 520487 ~ 604831 (+)
G91899 NA non-coding downstream 86668 552383 ~ 553627 (+)
G91827 NA other upstream 29490 83806 ~ 423652 (+)
G91897 NA other downstream 75976 541691 ~ 542909 (+)
G91903 bmpr1a other downstream 115092 580807 ~ 593877 (+)
G92019 NA other downstream 256658 722373 ~ 758976 (+)
G92146 NA other downstream 703106 1168821 ~ 1170046 (+)
G92157 NA other downstream 737172 1202887 ~ 1204046 (+)

Expression


Co-expression Network