trmt13


Basic Information

Item Value
gene id trmt13
gene name NA
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 1220810 ~ 1228679 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU124057
GCGCAGGATCCGCTCCAGCAGGCCGGTGGTCCGCAGCGCCCCGACCACCACGAGCACCGAGTAatccgccgccgccgccgcggGTCCGGGGGAACCGGGAGAAGAAGCTCCGGGACCGCCGCCCCgctccgctgctgctgctgccgccgccaTCATGGTTTCGGACAGTCCACGAGTGACGTCGACACGTCGACCGATCGTTAGCCCCGCCCCGCTGTTTTGTTTCCTACAGTTGGATGAGCACTCGAACGCAGCACGCATCGTCACTACGTCACTGTCCAACATGGCGGCGCCGCTGCCCGGCAGATGCGGCTTCTTCGTGGAGAAGAAGAAACGTTTCTGTAAAATGATCGTCGCGAGAGGAAAAGTGTTCTGCGGAGAGCACGCGACCCAGGAGGAAggaggcagcagcaggaggatcGCATGTCCTCTGGACCCCAAACACACTGTGAGTGAAGACCAGCTGGACAAACACCTGAAGAAGTGTAACTCCAGAGAGAAGCCAAAGCCGGTG
>TU124060
ATTCACCAAACTGTAATAAAGTGGTTCTAATAAAGCGTGTCAAACAGCAGTGTTTCCTACAGTTGGATGAGCACTCGAACGCAGCACGCATCGTCACTACGTCACTGTCCAACATGGCGGCGCCGCTGCCCGGCAGATGCGGCTTCTTCGTGGAGAAGAAGAAACGTTTCTGTAAAATGATCGTCGCGAGAGGAAAAGTGTTCTGCGGAGAGCACGCGACCCAGGAGGAAggaggcagcagcaggaggatcGCATGTCCTCTGGACCCCAAACACACTGTGAGTGAAGACCAGCTGGACAAACACCTGAAGAAGTGTAACTCCAGAGAGAAGCCAAAGCCGGTG
>XM_039811451.1
CAGCACGCATCGTCACTACGTCACTGTCCAACATGGCGGCGCCGCTGCCCGGCAGATGCGGCTTCTTCGTGGAGAAGAAGAAACGTTTCTGTAAAATGATCGTCGCGAGAGGAAAAGTGTTCTGCGGAGAGCACGCGACCCAGGAGGAAggaggcagcagcaggaggatcGCATGTCCTCTGGACCCCAAACACACTGTGAGTGAAGACCAGCTGGACAAACACCTGAAGAAGTGTAACTCCAGAGAGAAGCCAAAGCCGGAGGAACTCAACAACCCGAAGAATGGAGACTCCGCCCACAAACACCTCAGGCAGCAGtcgTCCATCTTAGGTCACCTGGAGGCGCTGGGGCTGCTGGGAAGGGGGCGGTGCTTCGTGGAGTTTGGAGCCGGGCGAGGGAAACTGTCTCACTGGATCCACGAAGCCCTGAAGACCCCAAAGACCCAGGAGACATCAGAGAACCAGGAGGATCTGCAGATTCTTCTGGTGGAGCGCTGCAGCACTCGCTTCAAGGTGGACGGGAAACATCAGGACGCTGGAGTTGAGTTTGAGAGGCTGCAGGTCGACATTCAACATCTGGATCTGAGTAAGAGACAAACATCTGCAGCCAGTCAGCCACATAGCCAGTTAGCCAGTCAGCCAGTCAGCCAGTCAGCCAGTAAAGTGCCGCTGCTCCGTCAGAAGAAGCTCCCTCTGGTCGGAGTGGGGAAACACCTGTGTGGAGCAGCAACAGaTCTGGCTCTGCGCTGTCTGATGGAGACTCCTGGACCCAGAGAGCAGACAGAGCCGCCCCCCAAACGCCTCAGAACCTCAGAACGAGAACCAGACCCAGACCCAGACCCAGACCCAGCCGGCGGTCCCGGCCCGGTTCTGGGCGTGGCGGTGGCGCTGTGCTGCCACCACCGCTGCGAGTGGCGCCACTACGTTGGGCGGAGCTTCTTCCTGCAGCGAGGACTTGGAGCCAAAGAGTTCTCGGCCTTCTGCCGCATGTCCAGCTGGGCCACCTGTGGGCTCAGACCGGCCAATCAGGACGCTCCCCCTCAGGGTCAGGAGCCCACCAAtcagagaggagaagaagagcacGAACCGGCAGAGGAGGCGGACGCTGTGATTGGgtTCCTGACGGCGGCCGAGCGCGAGCACGTGGGCCGTCTCTGTAAGCGTCTGATCGATGGCGGCCGACTGGACTTCCTGGAGACGCACGGCTTCACCAGCACACTGACTCGCTACGCCAGCAGTCAGCTGACCCTGGAGAACATCCTGCTGACTGCTGTCCCACAGGTTCCGCCCACatcctga

Function

NR:

description
tRNA:m(4)X modification enzyme TRM13 homolog

GO:

id name namespace
GO:0008152 metabolic process biological_process

KEGG:

id description
K15446 TRM13, CCDC76; tRNA:m4X modification enzyme

RNA

RNA id representative length rna type GC content exon number start site end site
TU124057 False 514 TUCP 0.62 4 1221373 1224808
TU124060 False 344 TUCP 0.53 4 1220810 1224808
XM_039811451.1 True 1298 mRNA 0.60 9 1222333 1228679

Neighbor

gene id symbol gene type direction distance location
plppr3b NA coding upstream 195667 1010747 ~ 1025143 (+)
med16 med16 coding upstream 211597 983651 ~ 1009213 (+)
grin3bb grin3b coding upstream 265574 886359 ~ 955236 (+)
wdr18 wdr18 coding upstream 366312 832241 ~ 854498 (+)
LOC120565732 NA coding upstream 432936 786702 ~ 787874 (+)
LOC120566171 LOC108248660 coding downstream 93726 1322405 ~ 1380914 (+)
LOC120565564 LOC102210819 coding downstream 309320 1537999 ~ 1574777 (+)
LOC120565565 LOC108250349,LOC108249964 coding downstream 396895 1625574 ~ 1630680 (+)
sid1 NA coding downstream 407284 1635963 ~ 1637498 (+)
serpinc1 NA coding downstream 662875 1891554 ~ 1908999 (+)
G92085 NA non-coding upstream 8970 1111418 ~ 1211840 (+)
G92087 NA non-coding upstream 9332 1182546 ~ 1211478 (+)
G92154 NA non-coding upstream 23093 1197258 ~ 1197717 (+)
G92144 NA non-coding upstream 66093 1153274 ~ 1154717 (+)
G92078 NA non-coding upstream 90988 1106149 ~ 1129822 (+)
G92166 NA non-coding downstream 1438 1230117 ~ 1230727 (+)
G92079 NA non-coding downstream 70479 1299158 ~ 1327538 (+)
G92177 NA non-coding downstream 84324 1313003 ~ 1357868 (+)
G92076 NA non-coding downstream 128199 1356878 ~ 1407682 (+)
G92075 NA non-coding downstream 140343 1369022 ~ 1651313 (+)
G92157 NA other upstream 16764 1202887 ~ 1204046 (+)
G92146 NA other upstream 50764 1168821 ~ 1170046 (+)
G92019 NA other upstream 461834 722373 ~ 758976 (+)
G91903 bmpr1a other upstream 626933 580807 ~ 593877 (+)
G91887 NA other upstream 654344 455709 ~ 566466 (+)
G92169 dbt,LOC102778223 other downstream 12708 1241387 ~ 1256194 (+)
LOC120565410 camk4,LOC102194929,LOC102785978 other downstream 235040 1463719 ~ 1535856 (+)
G92201 NA other downstream 350276 1578955 ~ 1910061 (+)
G92234 NA other downstream 468295 1696974 ~ 1804395 (+)
G92264 NA other downstream 638973 1867652 ~ 2000993 (+)

Expression


Co-expression Network