LOC120565410 (camk4,LOC102194929,LOC102785978)


Basic Information

Item Value
gene id LOC120565410
gene name camk4,LOC102194929,LOC102785978
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 1463719 ~ 1535856 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU124103
TGCCCTGCCCGGGAATCAAAGCCCCGAACGCCGCCGAGACAGCCCGAGTTCGCTCTCTGTTTCGCGGGGAAAACGCCCGAGCGTGCtccgttgttgttgttttcgcGCCTTTCGGGCTGGATCTAACGTCTCGAGACTGCAACGGACGGACCCTTTCTGCCGGTAAAAACACAGAAACTACGGATAAATCCCGGGAGAACGGTGATGGACTGAAGTGATCCGGTATCTGAGAGGGTTTTGGGCCCGATGGAAGCTGCGACACACCAAGACCTGGAGCGTCTGGGTCCCGGTTCCGGCTTCAGTCTGGACTAAAGACTCGGTTCGTCCCCGAGGGATTCAAACAGTCACTTCTTTTCTCCGGTAAACGGGCCCAAACCGGCGGATCAGGACCGTTCTGGGGGTATTTTAACAActatatttgcatattttattaatatttagttGAGATATTTGGATATGCAGCGTTTTCGTGGATTAACACCCAGCGGGATCATGTGTCccccctcctctgctcctctaATCCGGGTTTAAATCTGAGATCTGATCTGGATTACTCTGCTCCTCCGTTACATCTGTCCCGGGCTGAACCGGTCCCGGTCCCGATCCCTGGGGGATCTCGGATCCGGTCCTGGTTTTACGGAGTTCTGCTGTCAGATATTATCTAGGACTCGGTATCGGTTGCTCTCGGTCCTGGTTTCGGGGAGTTCTGCTGTCGCCATGCCGACGTCCCGGCCTGGTTCGGAGCCAGTGGAGTTCTGGGTGGACGGGTCGAGGCGGGACGGGGCGGTGGAGGAGTTCTACACCCTGAGTACCGAGCTGGGACGAGGAGCCACGTCCATCGTGTATCGCTGCGAGGAGAAACAGACTCAGAAACCCTACGCCATCAAAGTCCTCAAGAAAACGATCGACAAGAAAATAGTTCGTACagaaatt
>XR_005640234.1
AGCGCTGTGATTGGTCGGCACGGTGACAGAGGGGCGGGGATGTGAGATTACAGCATCTCTCCGTCTCTCGGTGCTGATACAGCGGACATCTGGAGCTGCCCTGCCCGGGAATCAAAGCCCCGAACGCCGCCGAGACAGCCCGAGTTCGCTCTCTGTTTCGCGGGGAAAACGCCCGAGCGTGCtccgttgttgttgttttcgcGCCTTTCGGGCTGGATCTAACGTCTCGAGACTGCAACGGACGGACCCTTTCTGCCGGTAAAAACACAGAAACTACGGATAAATCCCGGGAGAACGGTGATGGACTGAAGTGATCCGGTATCTGAGAGGGTTTTGGGCCCGATGGAAGCTGCGACACACCAAGACCTGGAGCGTCTGGGTCCCGGTTCCGGCTTCAGTCTGGACTAAAGACTCGGTTCGTCCCCGAGGGATTCAAACAGTCACTTCTTTTCTCCGGTAAACGGGCCCAAACCGGCGGATCAGGACCGTTCTGGGGGTATTTTAACAActatatttgcatattttattaatatttagttGAGATATTTGGATATGCAGCGTTTTCGTGGATTAACACCCAGCGGGATCATGTGTCccccctcctctgctcctctaATCCGGGTTTAAATCTGAGATCTGATCTGGATTACTCTGCTCCTCCGTTACATCTGTCCCGGGCTGAACCGGTCCCGGTCCCGATCCCTGGGGGATCTCGGATCCGGTCCTGGTTTTACGGAGTTCTGCTGTCAGATATTATCTAGGACTCGGTATCGGTTGCTCTCGGTCCTGGTTTCGGGGAGTTCTGCTGTCGCCATGCCGACGTCCCGGCCTGGTTCGGAGCCAGTGGAGTTCTGGGTGGACGGGTCGAGGCGGGACGGGGCGGTGGAGGAGTTCTACACCCTGAGTACCGAGCTGGGACGAGGAGCCACGTCCATCGTGTATCGCTGCGAGGAGAAACAGACTCAGAAACCCTACGCCATCAAAGTCCTCAAGAAAACGATCGACAAGAAAATAGTTCGGTGACAGAATCGTGTGTCCTG

Function

symbol description
camk4 Enables protein kinase activity. Acts upstream of or within definitive hemopoiesis. Located in cytosol and nucleus. Is expressed in nervous system and pharyngeal arch. Orthologous to human CAMK4 (calcium/calmodulin dependent protein kinase IV).

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0005524 ATP binding molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU124103 False 933 TUCP 0.55 5 1463815 1535856
XR_005640234.1 True 1040 lncRNA 0.55 4 1463719 1467817

Neighbor

gene id symbol gene type direction distance location
LOC120566171 LOC108248660 coding upstream 82805 1322405 ~ 1380914 (+)
plppr3b NA coding upstream 438576 1010747 ~ 1025143 (+)
med16 med16 coding upstream 454506 983651 ~ 1009213 (+)
grin3bb grin3b coding upstream 508483 886359 ~ 955236 (+)
wdr18 wdr18 coding upstream 609221 832241 ~ 854498 (+)
LOC120565564 LOC102210819 coding downstream 2143 1537999 ~ 1574777 (+)
LOC120565565 LOC108250349,LOC108249964 coding downstream 89718 1625574 ~ 1630680 (+)
sid1 NA coding downstream 100107 1635963 ~ 1637498 (+)
serpinc1 NA coding downstream 355698 1891554 ~ 1908999 (+)
LOC120565574 NA coding downstream 444982 1980838 ~ 1993868 (+)
LOC120565412 NA non-coding upstream 27105 1433658 ~ 1436614 (+)
G92183 NA non-coding upstream 50848 1391329 ~ 1412871 (+)
G92076 NA non-coding upstream 56037 1356878 ~ 1407682 (+)
G92084 NA non-coding upstream 60792 1385398 ~ 1402927 (+)
G92082 NA non-coding upstream 75842 1387509 ~ 1387877 (+)
G92088 NA non-coding downstream 33512 1569368 ~ 1604303 (+)
G92083 NA non-coding downstream 42663 1578519 ~ 1615013 (+)
G92195 NA non-coding downstream 46306 1582162 ~ 1582542 (+)
G92194 NA non-coding downstream 46788 1582644 ~ 1583710 (+)
G92213 NA non-coding downstream 49263 1585119 ~ 1586085 (+)
G92169 dbt,LOC102778223 other upstream 207525 1241387 ~ 1256194 (+)
trmt13 NA other upstream 235040 1220810 ~ 1228679 (+)
G92157 NA other upstream 259673 1202887 ~ 1204046 (+)
G92146 NA other upstream 293673 1168821 ~ 1170046 (+)
G92019 NA other upstream 704743 722373 ~ 758976 (+)
G92201 NA other downstream 43099 1578955 ~ 1910061 (+)
G92234 NA other downstream 161118 1696974 ~ 1804395 (+)
G92264 NA other downstream 331796 1867652 ~ 2000993 (+)
LOC120565570 NA other downstream 331865 1867721 ~ 1889087 (+)
LOC120565575 NA other downstream 452952 1988808 ~ 2025931 (+)

Expression


Co-expression Network