reep6 (reep6)


Basic Information

Item Value
gene id reep6
gene name reep6
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 2371988 ~ 2380260 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU124352
ATCGAATATTTAAGACGTACTGATTGCTGTTTAAGGTTAGCGTAAAACTACATGCTCTCTCTGCAGAGTCAAAGCCATCGAAAGTCTGAGCAAAGAAGACGACACCAAATGGCTGACGTACTGGGTGGTGTACGGTGTCTTCAGCCTGGGAGAGTTCTTCTCCGACATCTTCCTCTACTGGTTCCCCTTCTACTACGCCTTTAAGTGTCTCTTCCTGTTGTGGTGCATGGCTCCGGTGTCGTGGAACGGCTCCCAGATTATCTACGACAAAGTGGTTCGGCCCATCTTCCTCCGCCACGAGGCCACGGTGGACAACATGGTGAGCGACCTCGGCGGCAGAGCCATGAACGCCGCCGAGAACCTCACCAGAGAAGTCCTGTGCCATCTGATGAAGAACAAAGCCCTGGTGACTCCGGGGCCGTCGGCCAATCAGCAGGAAGCTATCAGTTTACCGAGTTCCTCAGCGGCTCGAGTCGCTCCATCAGAGCCGAgcatagaagaagaagaacggcCGCCTTTCCTTGGTTGACCGGTACGTCCTTCAGATAGCagcggaggaagaggagaagcctccgggaggaagaggaagagccttcagggaggaagaggaggagcctcatggaggaagaggagtccTCTTCACCATCACAGCGAGAAGAATCCCTCCTGCTGTCAAAGAGACTAATGTCCTATATCACATCAGATACGTTATATTTATTCATACCCCAGTCTGTAACGTGAACTCAGACAGACTGTGATGTTACAAACATGTTTccttattgttttcattttatttattcataggTTATTTATTAATGAATTCTGTGCTCAGTGGGATGTTTAGTTTTTAGACGATGAAGCACCTGCGAATAAAACCAAAAGGCTCAACTTCTCTGCTGCAGATAAACAGTTTGACTTCTCGGCAAAAAAAGCCCAAATAAAACGTTCCTCGTGGTTTATTCTTTCGTATCGTAGCAGTGCAAAGGGAAGATCACTGCTAAAAGTAACACATTCTCGAAAGATGTTCTCAAACAAAGTGCataaagcagcagcagcgagcGGGCTGCATGTGGACCCAAGTTTGTTGCTGTGTGATGTCATCAAGGCCTCACAGGACCGCTCGACTTTTAACCTTTTtaagaagacatgaaagagaaaTTAAGACATGAAAGAGAAAGTAAGTACGATGCAAAAATAAGGAAGACACGAATATACACATATTTAAACACATAGGAGGCATTGCCATCAATCTAAAATGGgcattttctgaagtttttgttgcGTTTTTTGGacgttgtttaaaaaaataa
>TU124353
ATCGAATATTTAAGACGTACTGATTGCTGTTTAAGGTTAGCGTAAAACTACATGCTCTCTCTGCAGAGTCAAAGCCATCGAAAGTCTGAGCAAAGAAGACGACACCAAATGGCTGACGTACTGGGTGGTGTACGGTGTCTTCAGCCTGGGAGAGTTCTTCTCCGACATCTTCCTCTACTGGTTCCCCTTCTACTACGCCTTTAAGTGTCTCTTCCTGTTGTGGTGCATGGCTCCGGTGTCGTGGAACGGCTCCCAGATTATCTACGACAAAGTGGTTCGGCCCATCTTCCTCCGCCACGAGGCCACGGTGGACAACATGGTGAGCGACCTCGGCGGCAGAGCCATGAACGCCGCCGAGAACCTCACCAGAGAAGTCCTGTGCCATCTGATGAAGAACAAAGCCCTGGTGACTCCGGGGCCGTCGGCCAATCAGCAGGAAGCTATCAGTTTACCGAGTTCCTCAGCGGCTCGAGTCGCTCCATCAGAGCCGAgcatagaagaagaagaacggcCGCCTTTCCTTGGTTGACCGGTACGGTAAGTCATCTGGTTTGGTGTTAGTAGAACCTCAGTGACCCTGGTAGATCAGTGACTGGGTTAAGGCCCAGATATACTTGCTTTTAAATACGCGTTCGTGTACGTAAGAAAATATATAAGAAAATATAACGCTATGTGTCTGCAAGATGCAATTCAGCACATGAGCGTGTGGCAGTATATCGGATTCAGCCGAATATTGGTCTTTTTGAGTTTTTTCCCAGcaaaccgaaccctacgctggTCACCatagtgacggcgccgttgattatgggaaggtgtttacgtaggtggagcgtttaatgcagtaggctgtgagaaagtggacatggaactggtgagcagaaaaagttgttgtttggcagtactttcagtcaaaagaaggccattcaagtccagctacatgttcaatctgttcaatgctgattggtctggtggtggcgaggaccctaaactatacacaacatggccgctgttacaacatctggtacgaaacatccgaaagaatacgagttgtgcacgaaggaatctccagacagcagccagaatgcagcaacttcaggtagataaaatgacaaatacactgctgtggacATTGTTTACTTCACTACTTGCACCTAGCTAAAAACGACAGCATACGTCTTTTAAATTATAGATTatagattggacagatagtctagctagctgtctggatttaccctgcagaggcctgaggagcagttaaccatagtcctcacaaatccaccggaggttagaaccccgacacagagacagaggaaggggacggacatccggcggcacctgaacaatcccggaagttgaACGCTTCCTTCAGATAGCagcggaggaagaggagaagcctccgggaggaagaggaagagccttcagggaggaagaggaggagcctcatggaggaagaggagtccTCTTCACCATCACAGCGAGAAGAATCCCTCCTGCTGTCAAAGAGACTAATGTCCTATATCACATCAGATACGTTATATTTATTCATACCCCAGTCTGTAACGTGAACTCAGACAGACTGTGATGTTACAAACATGTTTccttattgttttcattttatttattcataggTTATTTATTAATGAATTCTGTGCTCAGTGGGATGTTTAGTTTTTAGACGATGAAGCACCTGCGAATAAAACCAAAAGGCTCAACTTCTCTGCTGCAGATAAACAGTTTGACTTCTCGGCAAAAAAAGCCCAAATAAAACGTTCCTCGTGGTTTATTCTTTCGTATCGTAGCAGTGCAAAGGGAAGATCACTGCTAAAAGTAACACATTCTCGAAAGATGTTCTCAAACAAAGTGCataaagcagcagcagcgagcGGGCTGCATGTGGACCCAAGTTTGTTGCTGTGTGATGTCATCAAGGCCTCACAGGACCGCTCGACTTTTAACCTTTTtaagaagacatgaaagagaaaTTAAGACATGAAAGAGAAAGTAAGTACGATGCAAAAATAAGGAAGACACGAATATACACATATTTAAACACATAGGAGGCATTGCCATCAATCTAAAATGGgcattttctgaagtttttgttgcGTTTTTTGGacgttgtttaaaaaaataa
>XM_039811244.1
AGTCAAAGCCATCGAAAGTCTGAGCAAAGAAGACGACACCAAATGGCTGACGTACTGGGTGGTGTACGGTGTCTTCAGCCTGGGAGAGTTCTTCTCCGACATCTTCCTCTACTGGTTCCCCTTCTACTACGCCTTTAAGTGTCTCTTCCTGTTGTGGTGCATGGCTCCGGTGTCGTGGAACGGCTCCCAGATTATCTACGACAAAGTGGTTCGGCCCATCTTCCTCCGCCACGAGGCCACGGTGGACAACATGGTGAGCGACCTCGGCGGCAGAGCCATGAACGCCGCCGAGAACCTCACCAGAGAAGTCCTGTGCCATCTGATGAAGAACAAAGCCCTGGTGACTCCGGGGCCGTCGGCCAATCAGCAGGAAGCTATCAGTTTACCGAGTTCCTCAGCGGCTCGAGTCGCTCCATCAGAGCCGAgcatagaagaagaagaacggcCGCCTTTCCTTGGTTGACCGGTACGTCCTTCAGATAGCagcggaggaagaggagaagcctccgggaggaagaggaagagccttcagggaggaagaggaggagcctcatggaggaagaggagtccTCTTCACCATCACAGCGAGAAGAATCCCTCCTGCTGTCAAAGAGACTAATGTCCTATATCACATCAGATACGTTATATTTATTCATACCCCAGTCTGTAACGTGAACTCAGACAGACTGTGATGTTACAAACATGTTTccttattgttttcattttatttattcataggTTATTTATTAATGAATTCTGTGCTCAGTGGGATGTTTAGTTTTTAGACGATGAAGCACCTGCGAATAAAACCAAAAGGCTCAACTTCTCTGCTGCA
>XM_039811245.1
AGTCAAAGCCATCGAAAGTCTGAGCAAAGAAGACGACACCAAATGGCTGACGTACTGGGTGGTGTACGGTGTCTTCAGCCTGGGAGAGTTCTTCTCCGACATCTTCCTCTACTGGTTCCCCTTCTACTACGCCTTTAAGTGTCTCTTCCTGTTGTGGTGCATGGCTCCGGTGTCGTGGAACGGCTCCCAGATTATCTACGACAAAGTGGTTCGGCCCATCTTCCTCCGCCACGAGGCCACGGTGGACAACATGGTGAGCGACCTCGGCGGCAGAGCCATGAACGCCGCCGAGAACCTCACCAGAGAAGTCCTGTGCCATCTGATGAAGAACAAAGCCCTGGTGACTCCGGGGCCGTCGGCCAATCAGCAGGAAGCTATCAGTTTACCGAGTTCCTCAGCGGCTCGAGTCGCTCCATCAGAGCCGAgcatagaagaagaagaacggcCGCCTTTCCTTGGTTGACCGTCCTTCAGATAGCagcggaggaagaggagaagcctccgggaggaagaggaagagccttcagggaggaagaggaggagcctcatggaggaagaggagtccTCTTCACCATCACAGCGAGAAGAATCCCTCCTGCTGTCAAAGAGACTAATGTCCTATATCACATCAGATACGTTATATTTATTCATACCCCAGTCTGTAACGTGAACTCAGACAGACTGTGATGTTACAAACATGTTTccttattgttttcattttatttattcataggTTATTTATTAATGAATTCTGTGCTCAGTGGGATGTTTAGTTTTTAGACGATGAAGCACCTGCGAATAAAACCAAAAGGCTCAACTTCTCTGCTGCA

Function

symbol description
reep6 Involved in embryonic retina morphogenesis in camera-type eye. Acts upstream of or within retina layer formation. Predicted to be located in clathrin-coated vesicle membrane and endoplasmic reticulum membrane. Predicted to be integral component of membrane. Human ortholog(s) of this gene implicated in retinitis pigmentosa 77. Orthologous to human REEP6 (receptor accessory protein 6).

NR:

description
PREDICTED: receptor expression-enhancing protein 6 isoform X3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU124352 False 1310 TUCP 0.46 5 2371988 2380260
TU124353 True 2134 TUCP 0.46 5 2371988 2380260
XM_039811244.1 False 835 mRNA 0.50 5 2372054 2379851
XM_039811245.1 False 830 mRNA 0.50 5 2372054 2379851

Neighbor

gene id symbol gene type direction distance location
dph5 dph5,LOC102795811 coding upstream 300085 2050962 ~ 2071903 (+)
LOC120565574 NA coding upstream 378120 1980838 ~ 1993868 (+)
serpinc1 NA coding upstream 462989 1891554 ~ 1908999 (+)
sid1 NA coding upstream 734490 1635963 ~ 1637498 (+)
LOC120565565 LOC108250349,LOC108249964 coding upstream 741308 1625574 ~ 1630680 (+)
LOC120565427 NA coding downstream 31971 2412231 ~ 2420605 (+)
LOC120565428 NA coding downstream 43727 2423987 ~ 2427127 (+)
LOC120565432 NA coding downstream 70271 2450531 ~ 2461597 (+)
LOC120565421 NA coding downstream 206255 2586515 ~ 2593983 (+)
LOC120565422 NA coding downstream 441382 2821642 ~ 2840859 (+)
G92324 NA non-coding upstream 32417 2265267 ~ 2339571 (+)
G92328 NA non-coding upstream 48092 2295353 ~ 2323896 (+)
G92322 NA non-coding upstream 132565 2238384 ~ 2239423 (+)
G92286 NA non-coding upstream 266940 2104413 ~ 2105048 (+)
G92294 NA non-coding upstream 294213 2077077 ~ 2077775 (+)
G92305 NA non-coding downstream 4386 2384646 ~ 2391209 (+)
LOC120565447 NA non-coding downstream 55156 2435416 ~ 2440275 (+)
G92577 NA non-coding downstream 55953 2436213 ~ 2436473 (+)
G92587 NA non-coding downstream 69323 2449583 ~ 2533166 (+)
LOC120565445 LOC101882440,LOC101883177 non-coding downstream 100158 2480418 ~ 2480860 (+)
G92333 NA other upstream 2316 2365899 ~ 2369672 (+)
G92293 NA other upstream 295884 2072182 ~ 2076104 (+)
LOC120565575 NA other upstream 346057 1988808 ~ 2025931 (+)
G92264 NA other upstream 370995 1867652 ~ 2000993 (+)
LOC120565570 NA other upstream 482901 1867721 ~ 1889087 (+)
G92575 NA other downstream 153484 2533744 ~ 2582371 (+)
G92770 NA other downstream 601966 2982226 ~ 2983014 (+)
G92773 NA other downstream 630414 3010674 ~ 3094410 (+)
G92782 LOC103461136,LOC106954349 other downstream 745629 3125889 ~ 3132204 (+)
G92826 NA other downstream 971507 3351767 ~ 3464206 (+)

Expression


Co-expression Network