LOC120565405


Basic Information

Item Value
gene id LOC120565405
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 4235808 ~ 4265365 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU125686
GCTGCACAGAGAGCCTCCCTGCTCTATGAAGAAAACAATGATGATGGGAATCTGTGGACCAGGACCAGTCAGGacgcccccctccccctctgttcctcctcccatcctcctgACTCCAGCTGCCTGGTCTGTCTCAACCAGACGGTCTTCGTGGTGTGCCGTAACCTAACCAAAGGGGTCAAAGTGATGATGGAGGCTGGAACAGACCAGGTCCTCCTCTCAAAGTCTGAATGCCCTGAACTCTCCTCTGGCGaaataaaacacagagtcacacagaAGATGAATCATCCACCATGACTGATGAAGACACCATGAAGCAAACTGAGAGAC
>XR_005640231.1
CAGCTCATATGACCAAGCTGCACAGAGAGCCTCCCTGCTCTATGAAGAAAACAATGATGATGGGAATCTGTGGACCAGGACCAGTCAGGacgcccccctccccctctgttcctcctcccatcctcctgACTCCAGCTGCCTGGTCTGTCTCAACCAGACGGTCTTCGTGGTGTGCCGTAACCTAACCAAAGGGGTCAAAGTGATGATGGAGGCTGGAACAGACCAGGTCCTCCTCTCAAAGTCTGAATGCCCTGAACTCTCCTCTGGCGacgctccacaatCACTGCTGCCCGTTATCATCCCCttcatcatcctcatcctcctcatcatcatcagggggggtttatatatatatataggaaacGCTGCAGGAAGTGAAGAAATCAAACCCAGACTCACACAGAAGATGAATCATCCACCATGACTGATGTGACACCATGAAGGAAACTGAGAGACATCTTTTCTACTTTTTAGAGTTGGTGGAAATGAATCATGAACAGATGTTTTTAACCCTAATGCCCTcctcggtcatttttgtacatttttctcaagtttttttttcattttgtgatcatttttgctgtgttactggttatggcatgacattttgtaggaacc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU125686 False 330 lncRNA 0.53 3 4235824 4265365
XR_005640231.1 True 618 lncRNA 0.47 4 4235808 4240337

Neighbor

gene id symbol gene type direction distance location
LOC120565402 LOC106958509,LOC103391927,LOC106963510,LOC107690788 coding upstream 74366 4160909 ~ 4161442 (+)
LOC120565404 si:ch73-368j24.3,LOC108247233,LOC102383489,LOC105916187,LOC107569590 coding upstream 84805 4146493 ~ 4151003 (+)
LOC120565396 LOC108262407,LOC104935308,LOC104932967 coding upstream 93702 4141578 ~ 4142106 (+)
LOC120565394 LOC104935534,LOC103395676,LOC104932847,LOC103395770 coding upstream 103235 4131863 ~ 4132573 (+)
LOC120565880 LOC104960898 coding upstream 380998 3826863 ~ 3854810 (+)
LOC120565392 LOC103395674,LOC105891059,LOC101167724,LOC101068541,LOC105888650,LOC105896821,LOC106527799 coding downstream 79294 4344659 ~ 4345129 (+)
LOC120565398 LOC108262407,LOC104935308,LOC104932967 coding downstream 100757 4366122 ~ 4366561 (+)
LOC120564977 zgc:110434,LOC102204254,LOC103462478,LOC107386469,LOC101485372,LOC103381127,LOC103379246,LOC103395676 coding downstream 108461 4373826 ~ 4374754 (+)
prpf38a prpf38a,LOC107731643,LOC107684051 coding downstream 143278 4408643 ~ 4419781 (+)
LOC120565669 NA coding downstream 173975 4439340 ~ 4443524 (+)
G93151 NA non-coding upstream 37836 4168321 ~ 4197972 (+)
G93149 NA non-coding upstream 48346 4179115 ~ 4187462 (+)
G93128 NA non-coding upstream 131940 4102854 ~ 4103868 (+)
G92915 NA non-coding upstream 209537 3980907 ~ 4026271 (+)
G92894 NA non-coding upstream 311509 3865706 ~ 3924299 (+)
G93170 NA non-coding downstream 16086 4281451 ~ 4299758 (+)
G93169 NA non-coding downstream 17504 4282869 ~ 4283295 (+)
LOC120565406 NA non-coding downstream 67596 4332961 ~ 4340598 (+)
G93191 NA non-coding downstream 89377 4354742 ~ 4376530 (+)
G93281 NA non-coding downstream 147896 4413261 ~ 4413921 (+)
G93150 NA other upstream 17982 4174602 ~ 4217826 (+)
frem1b LOC100693369,LOC101486624,LOC102206675,LOC102294239 other upstream 412026 3714919 ~ 3823782 (+)
G92848 NA other upstream 628983 3600978 ~ 3606825 (+)
LOC120565459 NA other upstream 640420 3540034 ~ 3595388 (+)
G92838 NA other upstream 745187 3425734 ~ 3490621 (+)
LOC120565391 NA other downstream 19390 4284755 ~ 4313515 (+)
trmt1l trmt1l other downstream 419859 4685224 ~ 4713233 (+)
G93613 NA other downstream 1770004 6035369 ~ 6051520 (+)
G93638 NA other downstream 1936720 6202085 ~ 6214017 (+)
rhpn1 rhpn1 other downstream 2089527 6354892 ~ 6381598 (+)

Expression


Co-expression Network