LOC120565294 (pycrl)


Basic Information

Item Value
gene id LOC120565294
gene name pycrl
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 7878919 ~ 7890177 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU126854
CTTGAAATGACAGCTGTCTAACGGGCTCAGCTCCATCTGCTTTGCCTCAGACAAAAACCTCTCATCGGTTGTAGCCATCTCAAACTTAGCATCCTTTGCAAGAAGTGCTGgaactactactgctgctgctgctgctggtggaggTGCTGCTGGAGGAGCCCCCGCCTCCTTCAACCACTCAAACAGCCCGCTGACTGCAGGACACTGACAGGCCAGAATGCTGATCAGCAGGAAATACAGGCAGTGGATCAGGAGGCGAGCCATTGCTGGAACAGAACACCATCAAAATGGACCCTGAGATGGACTCGCAGCTGAAGATTGGTTTTATTGGTGCAGGGAACATGGCCTTC
>TU126855
AGTTCACTGGAACTCCGCTGGTTGGTTTTGTGGATGCTCCGGATGTTACCGATTTGACAGCACAAGCAAGTTTAAATCCCAGTGCAGTTTGAGTTTTTACTAAACGTTGGACGTCAGGAAATCTGAAACATCAGATCAAAATGGACCCTGAGATGGACTCGCAGCTGAAGATTGGTTTTATTGGTGCAGGGAACATGGCCTTC
>XM_039810957.1
GAATGGATGGCTGGGGAATGTATAAAGGCGCCGCCCACCCGACGTAGCAGGAGAGACGTCGAAATCAAACCCACCGATAGTTCACTGGAACTCCGCTGGTTGGTTTTGTGGATGCTCCGGATGTTACCGATTTGACAGCACAAGCAAGTTTAAATCCCAGTGCAGTTTGAGTTTTTACTAAACGTTGGACGTCAGGAAATCTGAAACATCAGGTGAATTAAATAGCCTACCACCAACGTTTATAAACGTTAGCCGGTGTTTATTCACAGCATCGCCTGACATCGTGTTTGTGTCACTCCGTGTTATTTTATGGTTGTCCAGTCAACAAGTAACACGTGCATTGTATTTCTAATCTGTGCTGGATTATTTAGTCGCTTTAGCTAGATGCAGCAGCAgggctgttgtttttttgctatcgtggtttttaacattttatcgGCACGCTTTTCCTCGACCTGTAGACTACATGCTAAAATGTAAGATAGAAACATCACCGCTCTGCCCCTACCACACTAGACATGCTAGTATTTAGTTAGCAACCTAGCCGTGTGAACATTCGTGTTGGGCAGACGTTTACTAGCCGtcgcgctaacgttagccaggCTACGTTGCCACAACAATGGACGACTCTGGTATCAAGAAACAGAACTGGGACGTGAAGGAGACGGAGTTATTTCTGGAAATCCTCAAGGAGCTGGACATGAAGAAATGCTTAGACGGGAGGAAAGTGAGGAATAACAAACTCTTCAAGGTGGCACACAGGAGAATGACAGCGGCCGGCTACCACAGATCTGTGGACCAATTAAAGTTTCGCTGGAAACTTCTTAAAAGTGCGTACTACAAGTGCAAGAGAGAACCCAACTCTCCGGCACCGACCAAAATACAAGGTTGGTGGCGGTATGAAAAGACAATGATAGCTATCATGGAGTCCAGACACCCCCTGGTCGGAGCTGGGGTCAACTCTGACAGAAATGATGAAGTGACAGAGGACTCGGACGGAGAAGCATCAATGCTGCACTGGCCGCAGCCCTGCCCGGACAATTCCACCCAGAACCTGGGTTTAATTATCAAAATGGACCCTGAGATGGACTCGCAGCTGAAGATTGGTTTTATTGGTGCAGGGAACATGGCCTTCTAACGTCAAAGCTTTTtaagaagtgttttttttttttctatttttttttttttaagcgtaAACGCACCATCCTCCAGGAACCTAGGGCGCTTTCAGGAGCTCGGGATTGCCGTCACTCACTCCAACATAGAGGTGGTCTGTGGGTCAGATGTGGTTTTTGTAGCAGTTAAACCTCACCTGGTTCCGCTAGTTCTCAATGAGATCTCACTACACGTCACTGACCGACACATTATTGTGTCTGTTGCAGCTGGAGTAACACTGGCAACATTGGAAGAGCTCCTGCCAGAGAATTCCGTTGCCATCAGGCTGATGCCAAATCTCCCATGTTTGGTTCAGGAAGGGGCTCTCCTGTTTGCAAGGGGATCCCATGCAAAACAGGAGGACGGAGCTATTCTTCGCTCCTTGTTGCATCGATGTGGTTTGGTGGAGGAGGGACCCGAGGCCTGGATCGACATCCACACTGGACTGAGCGGGAGCGGCGTTGCTTTCGTGTATCTGTTTGCTGAAGCGTTGGCAGAAGGAGCTGTTAAAATGGGAATGCCAAGTGCTCTGGCACACAGCATCGCATCTCAAACTGTTCTGGGTGCTGGGAGATTGTTACGTGAGTCTGGAAAGCATCCGGCTCAGCTCCGCTCTGAGGTCTGCACCCCAGGTGGAACAACCATCTACGGGCTTCACACCCTGGAACAGGGCGGTGTGAGGGCGGCGACCATGAGCGCTGTGGAATCTGCCACCGAGAGAGCCAGAGAGCTAGGCCGAAAGTCAGCAGCAGGATCCAGTAAATGAGGGCTGCTGTTTGCCTGAAATATCTACTCAATGGACTTACTTCAAGCCTGACAACAAACTGACTTTCTGGCTCAACTTCACTATGGAACACAAAGACAAAGCAGCACTTgtcacttttatttaatttttaccttaatttttttcccctcccttcAACAACTGCAGTTTATACTTGTTCTTGGTCTTTCACCAGAGGGATTTGTTGTGAGCAAAAAGGAAATCTTTAATAACATCGACGTAAGTGAAGTAAATGAATTGGTCATAACCTTGCGATTTATTTTGAGAGACTGGCTtcttttacatgcacaccaataatCCAATCTATTCTGATTTATGCAGTAATGCAAGCAACCAAATTTGATTACTCAAATATTTGTGGATATCGTAATCACAATAAGATGCACACAGTGCATTTATTGAAGGCCATGTTAGCCTGTGAACTTGAATACAGAAGGAAACACTGATGTCATAGAGTAACGTAGAGAGGGAGACTTCAGACATTAATCAAACTATACTCTGACGCATCGATCAGTCCAAGAAGCAACTTATATAATAAGGCCTTGCTAGTCATGATTGGGTTATGTGCATGTAATGTGGCGTACAGAATGAAAGTAAAATGTGTGGATGTACTGGTATTTAATTCTATTAAAATATAGTATCTACAGGTGCTATATACGACATTCAGAAaattaatatagcagcaaactTGTGAGCTAACCCCCATTAACACTGTTGGCTTTGTCAACACTGTTGCTGTTTGCTTGTGAAGTCAGATGTGAGAGCCGTGTGGAGGTTATCCTGGCCCACACTGTGAATCTTGTATATAGCACCATTTTCATATTTGACCAAATGAAGCATAAAACTTAAATTTGGGATGATTTAAGAATGATAATTgctggtagtttttttttttcccagtgtaGTTAACTTTTAGTAGCTAGCTTTGTGTATAACACAATGTTGAGAAAAATATTCATGATCCATGATGCCGAGTGTAGAATGGGTTTTCATAAAGTGTCCTTTGAACTGGA

Function

symbol description
pycrl Enables identical protein binding activity. Predicted to be involved in L-proline biosynthetic process. Predicted to act upstream of or within cytidine deamination. Predicted to be located in cytosol; intercellular bridge; and mitotic spindle. Orthologous to human PYCR3 (pyrroline-5-carboxylate reductase 3).

NR:

description
PREDICTED: pyrroline-5-carboxylate reductase 3 isoform X1

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0055129 L-proline biosynthetic process biological_process
GO:0004735 pyrroline-5-carboxylate reductase activity molecular_function

KEGG:

id description
K00286 proC; pyrroline-5-carboxylate reductase

RNA

RNA id representative length rna type GC content exon number start site end site
TU126854 False 350 lncRNA 0.53 2 7878919 7883828
TU126855 False 203 lncRNA 0.45 2 7880538 7883828
XM_039810957.1 True 2952 mRNA 0.45 7 7880460 7890177

Neighbor

gene id symbol gene type direction distance location
LOC120565295 tsta3,LOC104953080 coding upstream 4933 7868591 ~ 7873986 (+)
LOC120565646 LOC103354728,LOC102290039,LOC107394705 coding upstream 11191 7862214 ~ 7867728 (+)
LOC120564954 foxc1,LOC104932399,LOC104963658 coding upstream 273289 7603460 ~ 7605630 (+)
foxf2b foxf2,LOC102792585 coding upstream 288620 7586141 ~ 7590299 (+)
foxq1b foxq1,LOC104946962 coding upstream 297082 7580192 ~ 7581837 (+)
rgs4 NA coding downstream 318276 8208453 ~ 8214500 (+)
LOC120564973 LOC103367494,LOC104965670,LOC104935957 coding downstream 1131340 9021517 ~ 9033680 (+)
LOC120564878 NA coding downstream 1167164 9057341 ~ 9062036 (+)
LOC120566074 LOC104935955,LOC103367504 coding downstream 1177001 9067178 ~ 9070676 (+)
LOC120564889 rgs2,LOC103367537 coding downstream 1190682 9080859 ~ 9083857 (+)
G93986 NA non-coding upstream 263492 7557254 ~ 7615427 (+)
G93985 NA non-coding upstream 353576 7524990 ~ 7525343 (+)
LOC120566054 NA non-coding upstream 483641 7394373 ~ 7395278 (+)
G93933 NA non-coding upstream 551233 7327171 ~ 7327686 (+)
G93932 LOC103399850 non-coding upstream 555493 7322066 ~ 7323426 (+)
LOC120565893 NA non-coding downstream 2047 7892224 ~ 7895718 (+)
G94056 LOC104961454 non-coding downstream 63238 7953415 ~ 7955102 (+)
G94057 NA non-coding downstream 101111 7991288 ~ 7991555 (+)
G94059 NA non-coding downstream 212816 8102993 ~ 8103363 (+)
G94060 NA non-coding downstream 213313 8103490 ~ 8103804 (+)
G93938 NA other upstream 528332 7349810 ~ 7350587 (+)
rhpn1 rhpn1 other upstream 1497321 6354892 ~ 6381598 (+)
G93638 NA other upstream 1664902 6202085 ~ 6214017 (+)
G93613 NA other upstream 1827399 6035369 ~ 6051520 (+)
trmt1l trmt1l other upstream 3165686 4685224 ~ 4713233 (+)
LOC120565614 NA other downstream 5968 7896145 ~ 7905247 (+)
G94073 rgs5,LOC107393027,LOC104951458,LOC100708109,LOC105932873 other downstream 347193 8237370 ~ 8286436 (+)
G94199 LOC103367571,LOC102312400,LOC100710958,LOC101467655 other downstream 1256985 9147162 ~ 9168877 (+)
LOC120566011 NA other downstream 1494328 9384505 ~ 9543535 (+)
G94239 NA other downstream 1662119 9552296 ~ 9557568 (+)

Expression


Co-expression Network